HEADER RNA 12-MAY-11 2YIF TITLE CRYSTAL STRUCTURE OF A F. NUCLEATUM FMN RIBOSWITCH - FREE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMN RIBOSWITCH; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: APTAMER DOMAIN, RESIDUES 2495-2544; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FMN RIBOSWITCH; COMPND 9 CHAIN: Z; COMPND 10 FRAGMENT: APTAMER DOMAIN, RESIDUES 2550-2601; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: FUSOBACTERIUM NUCLEATUM SUBSP. NUCLEATUM; SOURCE 4 ORGANISM_TAXID: 190304; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: FUSOBACTERIUM NUCLEATUM SUBSP. NUCLEATUM; SOURCE 8 ORGANISM_TAXID: 190304 KEYWDS RNA, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR Q.VICENS,E.MONDRAGON,R.T.BATEY REVDAT 3 20-DEC-23 2YIF 1 REMARK LINK REVDAT 2 09-NOV-11 2YIF 1 JRNL REVDAT 1 31-AUG-11 2YIF 0 JRNL AUTH Q.VICENS,E.MONDRAGON,R.T.BATEY JRNL TITL MOLECULAR SENSING BY THE APTAMER DOMAIN OF THE FMN JRNL TITL 2 RIBOSWITCH: A GENERAL MODEL FOR LIGAND BINDING BY JRNL TITL 3 CONFORMATIONAL SELECTION. JRNL REF NUCLEIC ACIDS RES. V. 39 8586 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21745821 JRNL DOI 10.1093/NAR/GKR565 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 6383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8455 - 4.1534 0.99 3228 187 0.1887 0.2442 REMARK 3 2 4.1534 - 3.2980 0.90 2799 169 0.2637 0.2984 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.23 REMARK 3 B_SOL : 60.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 113.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 132.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.42840 REMARK 3 B22 (A**2) : -5.42840 REMARK 3 B33 (A**2) : 9.24680 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2683 REMARK 3 ANGLE : 0.517 4201 REMARK 3 CHIRALITY : 0.053 540 REMARK 3 PLANARITY : 0.036 114 REMARK 3 DIHEDRAL : 16.898 1350 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U54 AND PHOSPHATE GROUPS OF THE GTP IN REMARK 3 CHAINS X, Z ARE DISORDERED REMARK 4 REMARK 4 2YIF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1290048276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6627 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3F2Q REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RNA WAS CRYSTALLIZED FROM 11% PEG REMARK 280 -4000, 0.32 M MGCL2, AND 0.01 M TRIS-CL, PH 8.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.05600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.11200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.11200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.05600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U X 54 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GTP X 1 PG O1G O2G O3G REMARK 470 GTP Z 57 PG O1G O2G O3G REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X1054 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A X 14 OP2 REMARK 620 2 HOH X2003 O 86.2 REMARK 620 3 HOH X2004 O 82.2 91.1 REMARK 620 4 HOH X2005 O 97.7 88.9 179.9 REMARK 620 5 HOH X2006 O 93.7 179.9 88.9 91.1 REMARK 620 6 HOH X2007 O 171.0 89.9 89.7 90.4 90.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z1116 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X2001 O REMARK 620 2 HOH X2002 O 89.5 REMARK 620 3 HOH Z2013 O 90.5 179.9 REMARK 620 4 HOH Z2014 O 179.9 90.5 89.6 REMARK 620 5 HOH Z2015 O 89.7 89.3 90.6 90.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z1115 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U Z 89 O4 REMARK 620 2 A Z 92 OP2 83.6 REMARK 620 3 HOH Z2006 O 67.1 98.9 REMARK 620 4 HOH Z2007 O 88.3 162.3 92.5 REMARK 620 5 HOH Z2011 O 111.3 78.9 177.5 89.4 REMARK 620 6 HOH Z2012 O 156.6 102.9 89.6 90.7 92.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z1119 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH Z2008 O REMARK 620 2 HOH Z2009 O 90.6 REMARK 620 3 HOH Z2010 O 90.1 91.2 REMARK 620 4 HOH Z2016 O 179.9 89.3 89.8 REMARK 620 5 HOH Z2017 O 89.4 179.9 88.8 90.7 REMARK 620 6 HOH Z2018 O 90.0 88.9 179.9 90.1 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z1120 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH Z2001 O REMARK 620 2 HOH Z2002 O 89.2 REMARK 620 3 HOH Z2003 O 90.7 90.0 REMARK 620 4 HOH Z2004 O 90.8 180.0 90.0 REMARK 620 5 HOH Z2005 O 89.3 90.0 180.0 90.0 REMARK 620 6 HOH Z2019 O 180.0 90.8 89.3 89.2 90.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 1054 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 1055 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 1057 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG Z 1114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG Z 1115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG Z 1116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG Z 1117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG Z 1119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG Z 1120 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YIE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A F. NUCLEATUM FMN RIBOSWITCH BOUND TO FMN DBREF 2YIF X 3 52 GB 20095250 AE009951 2495 2544 DBREF 2YIF Z 58 109 GB 20095250 AE009951 2550 2601 SEQADV 2YIF GTP X 1 GB 20095250 EXPRESSION TAG SEQADV 2YIF G X 2 GB 20095250 EXPRESSION TAG SEQADV 2YIF U X 50 GB 20095250 A 2542 ENGINEERED MUTATION SEQADV 2YIF C X 51 GB 20095250 G 2543 ENGINEERED MUTATION SEQADV 2YIF C X 52 GB 20095250 U 2544 ENGINEERED MUTATION SEQADV 2YIF A X 53 GB 20095250 EXPRESSION TAG SEQADV 2YIF U X 54 GB 20095250 EXPRESSION TAG SEQADV 2YIF GTP Z 57 GB 20095250 EXPRESSION TAG SEQADV 2YIF G Z 58 GB 20095250 C 2550 ENGINEERED MUTATION SEQADV 2YIF A Z 59 GB 20095250 U 2551 ENGINEERED MUTATION SEQADV 2YIF U Z 110 GB 20095250 EXPRESSION TAG SEQADV 2YIF U Z 111 GB 20095250 EXPRESSION TAG SEQADV 2YIF C Z 112 GB 20095250 EXPRESSION TAG SEQADV 2YIF G Z 113 GB 20095250 EXPRESSION TAG SEQRES 1 X 54 GTP G A U C U U C G G G G C SEQRES 2 X 54 A G G G U G A A A U U C C SEQRES 3 X 54 C G A C C G G U G G U A U SEQRES 4 X 54 A G U C C A C G A A U C C SEQRES 5 X 54 A U SEQRES 1 Z 57 GTP G A U U G A U U U G G U SEQRES 2 Z 57 G A A A U U C C A A A A C SEQRES 3 Z 57 C G A C A G U A G A G U C SEQRES 4 Z 57 U G G A U G A G A G A A G SEQRES 5 Z 57 A U U C G MODRES 2YIF GTP X 1 G GUANOSINE-5'-TRIPHOSPHATE MODRES 2YIF GTP Z 57 G GUANOSINE-5'-TRIPHOSPHATE HET GTP X 1 28 HET GTP Z 57 28 HET MG X1054 1 HET MG X1055 1 HET K X1056 1 HET MG X1057 1 HET MG X1058 1 HET MG X1059 1 HET MG Z1114 1 HET MG Z1115 1 HET MG Z1116 1 HET MG Z1117 1 HET MG Z1118 1 HET MG Z1119 1 HET MG Z1120 1 HET K Z1121 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION FORMUL 1 GTP 2(C10 H16 N5 O14 P3) FORMUL 3 MG 12(MG 2+) FORMUL 5 K 2(K 1+) FORMUL 17 HOH *26(H2 O) LINK O3' GTP X 1 P G X 2 1555 1555 1.61 LINK O3' GTP Z 57 P G Z 58 1555 1555 1.61 LINK OP2 A X 14 MG MG X1054 1555 1555 2.60 LINK O6 G X 28 MG MG X1055 1555 1555 2.62 LINK MG MG X1054 O HOH X2003 1555 1555 1.85 LINK MG MG X1054 O HOH X2004 1555 1555 1.84 LINK MG MG X1054 O HOH X2005 1555 1555 1.85 LINK MG MG X1054 O HOH X2006 1555 1555 1.84 LINK MG MG X1054 O HOH X2007 1555 1555 1.85 LINK O HOH X2001 MG MG Z1116 1555 1555 1.84 LINK O HOH X2002 MG MG Z1116 1555 1555 1.84 LINK O4 U Z 89 MG MG Z1115 1555 1555 2.58 LINK OP2 A Z 92 MG MG Z1115 1555 1555 2.44 LINK MG MG Z1115 O HOH Z2006 1555 1555 1.85 LINK MG MG Z1115 O HOH Z2007 1555 1555 1.89 LINK MG MG Z1115 O HOH Z2011 1555 1555 1.85 LINK MG MG Z1115 O HOH Z2012 1555 1555 1.87 LINK MG MG Z1116 O HOH Z2013 1555 1555 1.85 LINK MG MG Z1116 O HOH Z2014 1555 1555 1.85 LINK MG MG Z1116 O HOH Z2015 1555 1555 1.85 LINK MG MG Z1119 O HOH Z2008 1555 1555 1.85 LINK MG MG Z1119 O HOH Z2009 1555 1555 1.84 LINK MG MG Z1119 O HOH Z2010 1555 1555 1.85 LINK MG MG Z1119 O HOH Z2016 1555 1555 1.85 LINK MG MG Z1119 O HOH Z2017 1555 1555 1.84 LINK MG MG Z1119 O HOH Z2018 1555 1555 1.84 LINK MG MG Z1120 O HOH Z2001 1555 1555 1.84 LINK MG MG Z1120 O HOH Z2002 1555 1555 1.85 LINK MG MG Z1120 O HOH Z2003 1555 1555 1.85 LINK MG MG Z1120 O HOH Z2004 1555 1555 1.85 LINK MG MG Z1120 O HOH Z2005 1555 1555 1.84 LINK MG MG Z1120 O HOH Z2019 1555 1555 1.84 SITE 1 AC1 6 A X 14 HOH X2003 HOH X2004 HOH X2005 SITE 2 AC1 6 HOH X2006 HOH X2007 SITE 1 AC2 1 G X 28 SITE 1 AC3 1 G X 16 SITE 1 AC4 1 G Z 84 SITE 1 AC5 6 U Z 89 A Z 92 HOH Z2006 HOH Z2007 SITE 2 AC5 6 HOH Z2011 HOH Z2012 SITE 1 AC6 7 G X 12 HOH X2001 HOH X2002 C Z 95 SITE 2 AC6 7 HOH Z2013 HOH Z2014 HOH Z2015 SITE 1 AC7 2 G Z 67 G Z 68 SITE 1 AC8 7 G Z 91 HOH Z2008 HOH Z2009 HOH Z2010 SITE 2 AC8 7 HOH Z2016 HOH Z2017 HOH Z2018 SITE 1 AC9 7 G Z 70 HOH Z2001 HOH Z2002 HOH Z2003 SITE 2 AC9 7 HOH Z2004 HOH Z2005 HOH Z2019 CRYST1 73.472 73.472 135.168 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013611 0.007858 0.000000 0.00000 SCALE2 0.000000 0.015716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007398 0.00000 HETATM 1 O3B GTP X 1 -35.816 110.289-301.399 1.00195.46 O ANISOU 1 O3B GTP X 1 18407 28958 26902 -3094 2929 8330 O HETATM 2 PB GTP X 1 -37.058 109.455-301.113 1.00190.89 P ANISOU 2 PB GTP X 1 18470 28040 26018 -2734 2730 7971 P HETATM 3 O1B GTP X 1 -38.124 109.683-302.179 1.00191.18 O ANISOU 3 O1B GTP X 1 19480 26866 26293 -2291 2883 7548 O HETATM 4 O2B GTP X 1 -36.701 107.976-301.061 1.00183.01 O ANISOU 4 O2B GTP X 1 17400 27467 24669 -1974 2828 8753 O HETATM 5 O3A GTP X 1 -37.661 109.886-299.680 1.00197.32 O ANISOU 5 O3A GTP X 1 19033 29319 26623 -3663 2285 7188 O HETATM 6 PA GTP X 1 -38.916 108.930-299.316 1.00194.60 P ANISOU 6 PA GTP X 1 19301 28646 25990 -3292 2150 6839 P HETATM 7 O1A GTP X 1 -38.459 107.482-299.230 1.00186.78 O ANISOU 7 O1A GTP X 1 18204 28153 24611 -2571 2234 7657 O HETATM 8 O2A GTP X 1 -40.041 109.099-300.332 1.00191.53 O ANISOU 8 O2A GTP X 1 19783 27065 25924 -2843 2289 6386 O HETATM 9 O5' GTP X 1 -39.502 109.351-297.852 1.00204.59 O ANISOU 9 O5' GTP X 1 20372 30333 27029 -4243 1801 6055 O HETATM 10 C5' GTP X 1 -38.642 109.381-296.692 1.00210.88 C ANISOU 10 C5' GTP X 1 20408 32284 27432 -4901 1533 6262 C HETATM 11 C4' GTP X 1 -38.783 110.682-295.923 1.00224.93 C ANISOU 11 C4' GTP X 1 21976 34182 29304 -6063 1378 5442 C HETATM 12 O4' GTP X 1 -37.980 111.742-296.527 1.00227.84 O ANISOU 12 O4' GTP X 1 21993 34491 30086 -6399 1536 5516 O HETATM 13 C3' GTP X 1 -40.174 111.289-295.846 1.00230.69 C ANISOU 13 C3' GTP X 1 23366 33966 30318 -6357 1463 4437 C HETATM 14 O3' GTP X 1 -41.098 110.609-295.000 1.00230.42 O ANISOU 14 O3' GTP X 1 23660 33937 29954 -6394 1349 4049 O HETATM 15 C2' GTP X 1 -39.888 112.755-295.555 1.00243.83 C ANISOU 15 C2' GTP X 1 24754 35636 32253 -7374 1508 3872 C HETATM 16 O2' GTP X 1 -39.727 113.167-294.214 1.00254.74 O ANISOU 16 O2' GTP X 1 25791 37748 33251 -8436 1292 3415 O HETATM 17 C1' GTP X 1 -38.648 112.995-296.415 1.00239.30 C ANISOU 17 C1' GTP X 1 23725 35308 31889 -7131 1640 4594 C HETATM 18 N9 GTP X 1 -39.076 113.387-297.749 1.00232.06 N ANISOU 18 N9 GTP X 1 23363 33286 31524 -6523 1972 4568 N HETATM 19 C8 GTP X 1 -38.715 112.843-298.959 1.00221.08 C ANISOU 19 C8 GTP X 1 22169 31557 30274 -5572 2180 5279 C HETATM 20 N7 GTP X 1 -39.296 113.426-299.973 1.00224.41 N ANISOU 20 N7 GTP X 1 23185 30945 31136 -5246 2417 5040 N HETATM 21 C5 GTP X 1 -40.085 114.409-299.392 1.00237.29 C ANISOU 21 C5 GTP X 1 24962 32199 32996 -5985 2384 4145 C HETATM 22 C6 GTP X 1 -40.952 115.369-299.981 1.00247.44 C ANISOU 22 C6 GTP X 1 26792 32423 34800 -5996 2573 3583 C HETATM 23 O6 GTP X 1 -41.210 115.548-301.184 1.00244.99 O ANISOU 23 O6 GTP X 1 26987 31301 34797 -5338 2747 3777 O HETATM 24 N1 GTP X 1 -41.551 116.167-299.010 1.00260.10 N ANISOU 24 N1 GTP X 1 28342 33946 36536 -6874 2561 2742 N HETATM 25 C2 GTP X 1 -41.346 116.059-297.651 1.00265.85 C ANISOU 25 C2 GTP X 1 28627 35517 36867 -7690 2376 2443 C HETATM 26 N2 GTP X 1 -42.012 116.919-296.863 1.00280.84 N ANISOU 26 N2 GTP X 1 30626 37131 38948 -8515 2480 1577 N HETATM 27 N3 GTP X 1 -40.546 115.174-297.100 1.00256.55 N ANISOU 27 N3 GTP X 1 26966 35372 35138 -7691 2125 2973 N HETATM 28 C4 GTP X 1 -39.956 114.391-298.020 1.00242.21 C ANISOU 28 C4 GTP X 1 25124 33640 33264 -6799 2148 3822 C