HEADER OXIDOREDUCTASE 16-MAY-11 2YIV TITLE NI,FE-CODH WITH N-BUTYLISOCYANATE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON MONOXIDE DEHYDROGENASE 2; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: CODH 2; COMPND 5 EC: 1.2.99.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS; SOURCE 3 ORGANISM_TAXID: 129958; SOURCE 4 STRAIN: Z-2091; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.JEOUNG,H.DOBBEK REVDAT 3 20-DEC-23 2YIV 1 REMARK LINK ATOM REVDAT 2 14-NOV-12 2YIV 1 LINK HETATM ANISOU REVDAT 1 28-MAR-12 2YIV 0 JRNL AUTH J.H.JEOUNG,H.DOBBEK JRNL TITL N-BUTYL ISOCYANIDE OXIDATION AT THE [NIFE4S4OH(X)] CLUSTER JRNL TITL 2 OF CO DEHYDROGENASE. JRNL REF J.BIOL.INORG.CHEM. V. 17 167 2012 JRNL REFN ISSN 0949-8257 JRNL PMID 21904889 JRNL DOI 10.1007/S00775-011-0839-Y REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 138367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.114 REMARK 3 R VALUE (WORKING SET) : 0.112 REMARK 3 FREE R VALUE : 0.143 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.9017 - 2.7551 0.99 13497 711 0.1186 0.1277 REMARK 3 2 2.7551 - 2.1879 0.99 13463 708 0.0999 0.1259 REMARK 3 3 2.1879 - 1.9116 0.99 13374 704 0.0958 0.1310 REMARK 3 4 1.9116 - 1.7370 0.99 13340 703 0.0887 0.1268 REMARK 3 5 1.7370 - 1.6125 0.99 13300 699 0.0913 0.1354 REMARK 3 6 1.6125 - 1.5175 0.98 13243 697 0.0949 0.1461 REMARK 3 7 1.5175 - 1.4415 0.98 13177 694 0.1057 0.1534 REMARK 3 8 1.4415 - 1.3788 0.98 13225 696 0.1266 0.1780 REMARK 3 9 1.3788 - 1.3257 0.97 13044 687 0.1486 0.1992 REMARK 3 10 1.3257 - 1.2800 0.88 11785 620 0.1837 0.2487 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 44.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.44990 REMARK 3 B22 (A**2) : -1.42710 REMARK 3 B33 (A**2) : -0.02280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.77230 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5172 REMARK 3 ANGLE : 1.976 7158 REMARK 3 CHIRALITY : 0.175 846 REMARK 3 PLANARITY : 0.006 927 REMARK 3 DIHEDRAL : 12.184 1985 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YIV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1290048306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3B53 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.35000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.73662 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 66.31886 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X2110 LIES ON A SPECIAL POSITION. REMARK 375 HOH X2142 LIES ON A SPECIAL POSITION. REMARK 375 HOH X2400 LIES ON A SPECIAL POSITION. REMARK 375 HOH X2467 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN X, LYS 3 TO ARG REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X -19 REMARK 465 GLY X -18 REMARK 465 SER X -17 REMARK 465 SER X -16 REMARK 465 HIS X -15 REMARK 465 HIS X -14 REMARK 465 HIS X -13 REMARK 465 HIS X -12 REMARK 465 HIS X -11 REMARK 465 HIS X -10 REMARK 465 SER X -9 REMARK 465 SER X -8 REMARK 465 GLY X -7 REMARK 465 LEU X -6 REMARK 465 VAL X -5 REMARK 465 PRO X -4 REMARK 465 ARG X -3 REMARK 465 GLY X -2 REMARK 465 SER X -1 REMARK 465 HIS X 0 REMARK 465 MET X 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 2341 O HOH X 2506 2.02 REMARK 500 O HOH X 2184 O HOH X 2185 2.12 REMARK 500 O HOH X 2483 O HOH X 2485 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 46 54.17 -91.80 REMARK 500 ASP X 63 -164.01 -106.10 REMARK 500 LYS X 157 -165.69 -162.01 REMARK 500 CYS X 201 -123.31 -114.34 REMARK 500 CYS X 201 -122.63 -114.57 REMARK 500 ALA X 203 44.83 -147.91 REMARK 500 THR X 242 -154.78 -156.25 REMARK 500 THR X 242 -154.78 -150.36 REMARK 500 ASN X 245 173.94 94.99 REMARK 500 HIS X 261 -38.01 -137.29 REMARK 500 CYS X 294 -152.28 56.22 REMARK 500 SER X 312 -121.83 47.90 REMARK 500 ASP X 330 -76.28 -113.44 REMARK 500 ASP X 330 -81.46 -109.94 REMARK 500 GLN X 332 131.38 81.39 REMARK 500 SER X 356 80.76 -154.93 REMARK 500 ASP X 454 -7.79 82.56 REMARK 500 GLU X 558 39.85 -142.41 REMARK 500 MET X 560 -58.05 -137.50 REMARK 500 SER X 598 -65.74 -143.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X2052 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH X2055 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH X2102 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH X2142 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH X2151 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH X2155 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH X2161 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH X2170 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH X2209 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH X2237 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH X2238 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH X2292 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH X2343 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH X2367 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH X2462 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH X2478 DISTANCE = 6.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X5001 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 39 SG REMARK 620 2 FES X5001 S1 117.7 REMARK 620 3 FES X5001 S2 106.8 105.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X5001 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 47 SG REMARK 620 2 FES X5001 S1 113.8 REMARK 620 3 FES X5001 S2 118.1 104.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X5000 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 48 SG REMARK 620 2 SF4 X5000 S1 109.3 REMARK 620 3 SF4 X5000 S3 112.5 107.9 REMARK 620 4 SF4 X5000 S4 117.5 104.4 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X5000 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 51 SG REMARK 620 2 SF4 X5000 S2 100.6 REMARK 620 3 SF4 X5000 S3 119.9 104.5 REMARK 620 4 SF4 X5000 S4 121.5 104.8 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X5000 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 56 SG REMARK 620 2 SF4 X5000 S1 108.3 REMARK 620 3 SF4 X5000 S2 117.1 104.2 REMARK 620 4 SF4 X5000 S3 114.9 106.4 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X5000 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 70 SG REMARK 620 2 SF4 X5000 S1 115.8 REMARK 620 3 SF4 X5000 S2 110.2 102.9 REMARK 620 4 SF4 X5000 S4 118.1 103.7 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE X5004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 261 NE2 REMARK 620 2 CYS X 295 SG 103.2 REMARK 620 3 WCC X5002 S4 94.1 104.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE X5004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 295 SG REMARK 620 2 CYS X 526 SG 87.2 REMARK 620 3 WCC X5002 S4 96.5 168.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCC X5002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 333 SG REMARK 620 2 WCC X5002 S2 115.6 REMARK 620 3 WCC X5002 S3 100.5 108.8 REMARK 620 4 WCC X5002 S4 115.6 100.5 116.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCC X5002 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 446 SG REMARK 620 2 WCC X5002 S1 123.8 REMARK 620 3 WCC X5002 S2 105.5 106.4 REMARK 620 4 WCC X5002 S3 110.0 99.4 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCC X5002 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 476 SG REMARK 620 2 WCC X5002 S1 109.8 REMARK 620 3 WCC X5002 S2 118.9 106.9 REMARK 620 4 WCC X5002 S4 109.8 110.1 101.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCC X5002 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 526 SG REMARK 620 2 WCC X5002 S1 91.0 REMARK 620 3 WCC X5002 S3 161.0 97.7 REMARK 620 4 WCC X5002 S4 96.7 67.0 71.7 REMARK 620 5 YIV X5003 O1 90.6 174.2 82.3 118.3 REMARK 620 6 YIV X5003 C 92.2 147.8 89.3 144.1 26.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 X 5000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES X 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WCC X 5002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YIV X 5003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE X 5004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBN X 5005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SU7 RELATED DB: PDB REMARK 900 CARBON MONOXIDE DEHYDROGENASE FROM CARBOXYDOTHERMUSHYDROGENOFORMANS- REMARK 900 DTT REDUCED STATE REMARK 900 RELATED ID: 1SU8 RELATED DB: PDB REMARK 900 CARBON MONOXIDE INDUCED DECOMPOSITION OF THE ACTIVE SITE [NI-4FE-5S] REMARK 900 CLUSTER OF CO DEHYDROGENASE REMARK 900 RELATED ID: 1SU6 RELATED DB: PDB REMARK 900 CARBON MONOXIDE DEHYDROGENASE FROM CARBOXYDOTHERMUSHYDROGENOFORMANS: REMARK 900 CO REDUCED STATE REMARK 900 RELATED ID: 1SUF RELATED DB: PDB REMARK 900 CARBON MONOXIDE DEHYDROGENASE FROM CARBOXYDOTHERMUSHYDROGENOFORMANS- REMARK 900 INACTIVE STATE DBREF 2YIV X 1 636 UNP Q9F8A8 COOS2_CARHZ 1 636 SEQADV 2YIV MET X -19 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV GLY X -18 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV SER X -17 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV SER X -16 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV HIS X -15 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV HIS X -14 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV HIS X -13 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV HIS X -12 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV HIS X -11 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV HIS X -10 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV SER X -9 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV SER X -8 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV GLY X -7 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV LEU X -6 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV VAL X -5 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV PRO X -4 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV ARG X -3 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV GLY X -2 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV SER X -1 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV HIS X 0 UNP Q9F8A8 EXPRESSION TAG SEQADV 2YIV ARG X 3 UNP Q9F8A8 LYS 3 ENGINEERED MUTATION SEQRES 1 X 656 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 X 656 LEU VAL PRO ARG GLY SER HIS MET ALA ARG GLN ASN LEU SEQRES 3 X 656 LYS SER THR ASP ARG ALA VAL GLN GLN MET LEU ASP LYS SEQRES 4 X 656 ALA LYS ARG GLU GLY ILE GLN THR VAL TRP ASP ARG TYR SEQRES 5 X 656 GLU ALA MET LYS PRO GLN CYS GLY PHE GLY GLU THR GLY SEQRES 6 X 656 LEU CYS CYS ARG HIS CYS LEU GLN GLY PRO CYS ARG ILE SEQRES 7 X 656 ASN PRO PHE GLY ASP GLU PRO LYS VAL GLY ILE CYS GLY SEQRES 8 X 656 ALA THR ALA GLU VAL ILE VAL ALA ARG GLY LEU ASP ARG SEQRES 9 X 656 SER ILE ALA ALA GLY ALA ALA GLY HIS SER GLY HIS ALA SEQRES 10 X 656 LYS HIS LEU ALA HIS THR LEU LYS LYS ALA VAL GLN GLY SEQRES 11 X 656 LYS ALA ALA SER TYR MET ILE LYS ASP ARG THR LYS LEU SEQRES 12 X 656 HIS SER ILE ALA LYS ARG LEU GLY ILE PRO THR GLU GLY SEQRES 13 X 656 GLN LYS ASP GLU ASP ILE ALA LEU GLU VAL ALA LYS ALA SEQRES 14 X 656 ALA LEU ALA ASP PHE HIS GLU LYS ASP THR PRO VAL LEU SEQRES 15 X 656 TRP VAL THR THR VAL LEU PRO PRO SER ARG VAL LYS VAL SEQRES 16 X 656 LEU SER ALA HIS GLY LEU ILE PRO ALA GLY ILE ASP HIS SEQRES 17 X 656 GLU ILE ALA GLU ILE MET HIS ARG THR SER MET GLY CYS SEQRES 18 X 656 ASP ALA ASP ALA GLN ASN LEU LEU LEU GLY GLY LEU ARG SEQRES 19 X 656 CYS SER LEU ALA ASP LEU ALA GLY CYS TYR MET GLY THR SEQRES 20 X 656 ASP LEU ALA ASP ILE LEU PHE GLY THR PRO ALA PRO VAL SEQRES 21 X 656 VAL THR GLU SER ASN LEU GLY VAL LEU LYS ALA ASP ALA SEQRES 22 X 656 VAL ASN VAL ALA VAL HIS GLY HIS ASN PRO VAL LEU SER SEQRES 23 X 656 ASP ILE ILE VAL SER VAL SER LYS GLU MET GLU ASN GLU SEQRES 24 X 656 ALA ARG ALA ALA GLY ALA THR GLY ILE ASN VAL VAL GLY SEQRES 25 X 656 ILE CYS CYS THR GLY ASN GLU VAL LEU MET ARG HIS GLY SEQRES 26 X 656 ILE PRO ALA CYS THR HIS SER VAL SER GLN GLU MET ALA SEQRES 27 X 656 MET ILE THR GLY ALA LEU ASP ALA MET ILE LEU ASP TYR SEQRES 28 X 656 GLN CYS ILE GLN PRO SER VAL ALA THR ILE ALA GLU CYS SEQRES 29 X 656 THR GLY THR THR VAL ILE THR THR MET GLU MET SER LYS SEQRES 30 X 656 ILE THR GLY ALA THR HIS VAL ASN PHE ALA GLU GLU ALA SEQRES 31 X 656 ALA VAL GLU ASN ALA LYS GLN ILE LEU ARG LEU ALA ILE SEQRES 32 X 656 ASP THR PHE LYS ARG ARG LYS GLY LYS PRO VAL GLU ILE SEQRES 33 X 656 PRO ASN ILE LYS THR LYS VAL VAL ALA GLY PHE SER THR SEQRES 34 X 656 GLU ALA ILE ILE ASN ALA LEU SER LYS LEU ASN ALA ASN SEQRES 35 X 656 ASP PRO LEU LYS PRO LEU ILE ASP ASN VAL VAL ASN GLY SEQRES 36 X 656 ASN ILE ARG GLY VAL CYS LEU PHE ALA GLY CYS ASN ASN SEQRES 37 X 656 VAL LYS VAL PRO GLN ASP GLN ASN PHE THR THR ILE ALA SEQRES 38 X 656 ARG LYS LEU LEU LYS GLN ASN VAL LEU VAL VAL ALA THR SEQRES 39 X 656 GLY CYS GLY ALA GLY ALA LEU MET ARG HIS GLY PHE MET SEQRES 40 X 656 ASP PRO ALA ASN VAL ASP GLU LEU CYS GLY ASP GLY LEU SEQRES 41 X 656 LYS ALA VAL LEU THR ALA ILE GLY GLU ALA ASN GLY LEU SEQRES 42 X 656 GLY GLY PRO LEU PRO PRO VAL LEU HIS MET GLY SER CYS SEQRES 43 X 656 VAL ASP ASN SER ARG ALA VAL ALA LEU VAL ALA ALA LEU SEQRES 44 X 656 ALA ASN ARG LEU GLY VAL ASP LEU ASP ARG LEU PRO VAL SEQRES 45 X 656 VAL ALA SER ALA ALA GLU ALA MET HIS GLU LYS ALA VAL SEQRES 46 X 656 ALA ILE GLY THR TRP ALA VAL THR ILE GLY LEU PRO THR SEQRES 47 X 656 HIS ILE GLY VAL LEU PRO PRO ILE THR GLY SER LEU PRO SEQRES 48 X 656 VAL THR GLN ILE LEU THR SER SER VAL LYS ASP ILE THR SEQRES 49 X 656 GLY GLY TYR PHE ILE VAL GLU LEU ASP PRO GLU THR ALA SEQRES 50 X 656 ALA ASP LYS LEU LEU ALA ALA ILE ASN GLU ARG ARG ALA SEQRES 51 X 656 GLY LEU GLY LEU PRO TRP HET SF4 X5000 8 HET FES X5001 4 HET WCC X5002 8 HET YIV X5003 16 HET FE X5004 2 HET NBN X5005 30 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM WCC FE(3)-NI(1)-S(4) CLUSTER HETNAM YIV N-BUTYLFORMAMIDE HETNAM FE FE (III) ION HETNAM NBN N-BUTYL ISOCYANIDE HETSYN WCC C CLUSTER CUBANE FORMUL 2 SF4 FE4 S4 FORMUL 3 FES FE2 S2 FORMUL 4 WCC FE3 NI S4 FORMUL 5 YIV C5 H11 N O FORMUL 6 FE FE 3+ FORMUL 7 NBN C5 H9 N FORMUL 8 HOH *826(H2 O) HELIX 1 1 ARG X 3 LYS X 7 5 5 HELIX 2 2 ASP X 10 GLY X 24 1 15 HELIX 3 3 THR X 27 LYS X 36 1 10 HELIX 4 4 CYS X 39 GLY X 45 1 7 HELIX 5 5 THR X 73 GLN X 109 1 37 HELIX 6 6 ASP X 119 GLY X 131 1 13 HELIX 7 7 LYS X 138 ASP X 153 1 16 HELIX 8 8 VAL X 161 THR X 166 1 6 HELIX 9 9 PRO X 169 HIS X 179 1 11 HELIX 10 10 GLY X 185 THR X 197 1 13 HELIX 11 11 ASP X 204 GLY X 235 1 32 HELIX 12 12 ASN X 245 LEU X 249 5 5 HELIX 13 13 ASN X 262 MET X 276 1 15 HELIX 14 14 MET X 276 ALA X 283 1 8 HELIX 15 15 CYS X 294 GLY X 305 1 12 HELIX 16 16 HIS X 311 SER X 314 5 4 HELIX 17 17 GLN X 315 THR X 321 1 7 HELIX 18 18 SER X 337 GLY X 346 1 10 HELIX 19 19 ALA X 367 GLU X 369 5 3 HELIX 20 20 ALA X 370 ARG X 389 1 20 HELIX 21 21 SER X 408 LYS X 418 1 11 HELIX 22 22 PRO X 424 ASN X 434 1 11 HELIX 23 23 ASP X 454 GLN X 467 1 14 HELIX 24 24 GLY X 475 HIS X 484 1 10 HELIX 25 25 ASP X 488 ALA X 490 5 3 HELIX 26 26 ASN X 491 CYS X 496 1 6 HELIX 27 27 GLY X 497 ASN X 511 1 15 HELIX 28 28 ASP X 528 GLY X 544 1 17 HELIX 29 29 ASP X 546 LEU X 550 5 5 HELIX 30 30 HIS X 561 ILE X 574 1 14 HELIX 31 31 SER X 589 SER X 598 1 10 HELIX 32 32 VAL X 600 GLY X 605 1 6 HELIX 33 33 ASP X 613 LEU X 632 1 20 SHEET 1 XA 2 CYS X 47 CYS X 48 0 SHEET 2 XA 2 CYS X 56 ARG X 57 -1 O CYS X 56 N CYS X 48 SHEET 1 XB 2 VAL X 240 SER X 244 0 SHEET 2 XB 2 THR X 401 ALA X 405 -1 O THR X 401 N SER X 244 SHEET 1 XC 6 ALA X 308 THR X 310 0 SHEET 2 XC 6 ILE X 288 ILE X 293 1 O GLY X 292 N CYS X 309 SHEET 3 XC 6 VAL X 254 HIS X 259 1 O VAL X 254 N ASN X 289 SHEET 4 XC 6 LEU X 324 LEU X 329 1 N ASP X 325 O ASN X 255 SHEET 5 XC 6 THR X 348 THR X 351 1 O THR X 348 N MET X 327 SHEET 6 XC 6 THR X 362 HIS X 363 1 O THR X 362 N THR X 351 SHEET 1 XD 6 VAL X 520 GLY X 524 0 SHEET 2 XD 6 LEU X 470 THR X 474 1 O VAL X 471 N LEU X 521 SHEET 3 XD 6 VAL X 440 PHE X 443 1 O CYS X 441 N VAL X 472 SHEET 4 XD 6 VAL X 552 ALA X 556 1 O VAL X 553 N LEU X 442 SHEET 5 XD 6 PRO X 577 ILE X 580 1 O PRO X 577 N ALA X 554 SHEET 6 XD 6 TYR X 607 VAL X 610 1 O TYR X 607 N THR X 578 LINK SG CYS X 39 FE2 FES X5001 1555 1555 2.28 LINK SG CYS X 47 FE1 FES X5001 1555 1555 2.27 LINK SG CYS X 48 FE2 SF4 X5000 1555 1555 2.31 LINK SG CYS X 51 FE1 SF4 X5000 1555 1555 2.29 LINK SG CYS X 56 FE4 SF4 X5000 1555 1555 2.33 LINK SG CYS X 70 FE3 SF4 X5000 1555 1555 2.32 LINK NE2 HIS X 261 FE A FE X5004 1555 1555 2.05 LINK SG ACYS X 295 FE A FE X5004 1555 1555 2.30 LINK SG BCYS X 295 FE B FE X5004 1555 1555 2.58 LINK SG CYS X 333 FE1 WCC X5002 1555 1555 2.26 LINK SG CYS X 446 FE4 WCC X5002 1555 1555 2.38 LINK SG CYS X 476 FE3 WCC X5002 1555 1555 2.34 LINK SG CYS X 526 NI WCC X5002 1555 1555 2.09 LINK SG CYS X 526 FE B FE X5004 1555 1555 2.36 LINK NI WCC X5002 O1 YIV X5003 1555 1555 2.77 LINK NI WCC X5002 C YIV X5003 1555 1555 1.95 LINK S4 WCC X5002 FE B FE X5004 1555 1555 2.38 LINK S4 WCC X5002 FE A FE X5004 1555 1555 2.32 CISPEP 1 LYS X 36 PRO X 37 0 -5.64 CISPEP 2 GLY X 54 PRO X 55 0 5.49 CISPEP 3 GLU X 64 PRO X 65 0 3.47 SITE 1 AC1 7 CYS X 48 CYS X 51 GLY X 54 CYS X 56 SITE 2 AC1 7 CYS X 70 ARG X 80 MET X 199 SITE 1 AC2 3 CYS X 39 GLY X 42 CYS X 47 SITE 1 AC3 14 HIS X 261 CYS X 294 CYS X 295 SER X 312 SITE 2 AC3 14 CYS X 333 GLY X 445 CYS X 446 CYS X 476 SITE 3 AC3 14 CYS X 526 MET X 560 LYS X 563 YIV X5003 SITE 4 AC3 14 FE X5004 HOH X5100 SITE 1 AC4 9 HIS X 93 ALA X 444 GLY X 445 CYS X 526 SITE 2 AC4 9 LYS X 563 ALA X 564 ILE X 567 WCC X5002 SITE 3 AC4 9 HOH X5100 SITE 1 AC5 6 HIS X 261 CYS X 295 CYS X 526 LYS X 563 SITE 2 AC5 6 WCC X5002 HOH X5100 SITE 1 AC6 6 LEU X 82 VAL X 565 ILE X 580 PRO X 584 SITE 2 AC6 6 ILE X 586 PHE X 608 CRYST1 112.700 75.240 71.220 90.00 111.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008873 0.000000 0.003474 0.00000 SCALE2 0.000000 0.013291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015079 0.00000