HEADER OXIDOREDUCTASE 19-MAY-11 2YJ7 TITLE CRYSTAL STRUCTURE OF A HYPERSTABLE PROTEIN FROM THE PRECAMBRIAN PERIOD COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPBCA THIOREDOXIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET30A KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,A.INGLES,B.IBARRA,J.M.GARCIA-RUIZ REVDAT 4 20-DEC-23 2YJ7 1 REMARK LINK REVDAT 3 25-SEP-13 2YJ7 1 JRNL REVDAT 2 21-AUG-13 2YJ7 1 JRNL REMARK MASTER REVDAT 1 30-MAY-12 2YJ7 0 JRNL AUTH A.INGLES-PRIETO,B.IBARRA-MOLERO,A.DELGADO-DELGADO, JRNL AUTH 2 R.PEREZ-JIMENEZ,J.M.FERNANDEZ,E.A.GAUCHER,J.M.SANCHEZ-RUIZ, JRNL AUTH 3 J.A.GAVIRA JRNL TITL CONSERVATION OF PROTEIN STRUCTURE OVER FOUR BILLION YEARS JRNL REF STRUCTURE V. 21 1690 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23932589 JRNL DOI 10.1016/J.STR.2013.06.020 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 20541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4698 - 3.1562 0.99 2947 155 0.1618 0.1937 REMARK 3 2 3.1562 - 2.5052 0.99 2865 159 0.1768 0.2167 REMARK 3 3 2.5052 - 2.1885 0.98 2855 137 0.1882 0.2191 REMARK 3 4 2.1885 - 1.9884 0.98 2814 152 0.1828 0.2298 REMARK 3 5 1.9884 - 1.8459 0.96 2723 140 0.1930 0.2356 REMARK 3 6 1.8459 - 1.7371 0.94 2702 135 0.2158 0.2591 REMARK 3 7 1.7371 - 1.6501 0.92 2617 140 0.2459 0.2855 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 50.54 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34940 REMARK 3 B22 (A**2) : -0.02280 REMARK 3 B33 (A**2) : 0.37210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.20140 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1920 REMARK 3 ANGLE : 0.973 2649 REMARK 3 CHIRALITY : 0.069 305 REMARK 3 PLANARITY : 0.005 348 REMARK 3 DIHEDRAL : 11.588 797 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 2:31) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8252 3.5179 12.7424 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.0355 REMARK 3 T33: 0.0476 T12: -0.0078 REMARK 3 T13: 0.0191 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.8725 L22: 0.5496 REMARK 3 L33: 1.4701 L12: -0.2968 REMARK 3 L13: -0.5837 L23: -0.1848 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.0220 S13: -0.0299 REMARK 3 S21: -0.0040 S22: 0.0245 S23: 0.1241 REMARK 3 S31: 0.0371 S32: -0.0492 S33: 0.0106 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 32:47) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8234 -9.1215 9.5901 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.0439 REMARK 3 T33: 0.0867 T12: 0.0128 REMARK 3 T13: 0.0532 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.5926 L22: 0.4330 REMARK 3 L33: 1.0089 L12: -0.0607 REMARK 3 L13: -0.5952 L23: -0.1300 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: 0.0059 S13: -0.0697 REMARK 3 S21: 0.1001 S22: -0.0051 S23: 0.0436 REMARK 3 S31: 0.1516 S32: -0.0067 S33: 0.0236 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 48:94) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4631 3.4114 13.3484 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.0616 REMARK 3 T33: 0.0398 T12: -0.0083 REMARK 3 T13: 0.0170 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.8181 L22: 0.4919 REMARK 3 L33: 1.5152 L12: 0.1070 REMARK 3 L13: -0.4151 L23: -0.2750 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.0600 S13: 0.0776 REMARK 3 S21: 0.0081 S22: -0.0426 S23: -0.0064 REMARK 3 S31: 0.0617 S32: 0.1457 S33: 0.0011 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 95:106) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3778 -5.0727 22.1717 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.2578 REMARK 3 T33: 0.0811 T12: 0.0683 REMARK 3 T13: -0.0142 T23: 0.0620 REMARK 3 L TENSOR REMARK 3 L11: 0.6056 L22: 1.0682 REMARK 3 L33: 1.4515 L12: 0.0469 REMARK 3 L13: -0.3806 L23: -1.1631 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.1727 S13: -0.0476 REMARK 3 S21: 0.1482 S22: -0.0733 S23: -0.0915 REMARK 3 S31: -0.0320 S32: 0.1689 S33: 0.0651 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 2:10) REMARK 3 ORIGIN FOR THE GROUP (A): -42.7247 2.1367 9.2541 REMARK 3 T TENSOR REMARK 3 T11: 0.0909 T22: 0.1524 REMARK 3 T33: 0.3276 T12: -0.0265 REMARK 3 T13: -0.0778 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 0.6135 L22: 1.6799 REMARK 3 L33: 0.2181 L12: 0.5974 REMARK 3 L13: -0.0250 L23: 0.4000 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: 0.0794 S13: -0.1313 REMARK 3 S21: 0.0291 S22: 0.0056 S23: 0.0030 REMARK 3 S31: 0.0355 S32: -0.0091 S33: -0.0156 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 11:31) REMARK 3 ORIGIN FOR THE GROUP (A): -37.4094 2.9859 13.3647 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.1689 REMARK 3 T33: 0.2902 T12: 0.0032 REMARK 3 T13: -0.0193 T23: 0.1092 REMARK 3 L TENSOR REMARK 3 L11: 1.0236 L22: 0.3210 REMARK 3 L33: 0.5103 L12: -0.2016 REMARK 3 L13: 0.2996 L23: 0.0608 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: -0.1105 S13: -0.1075 REMARK 3 S21: 0.0210 S22: 0.0333 S23: 0.1871 REMARK 3 S31: -0.0032 S32: -0.1298 S33: 0.0321 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 32:47) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8393 -7.9127 9.3983 REMARK 3 T TENSOR REMARK 3 T11: 0.1664 T22: 0.1022 REMARK 3 T33: 0.3205 T12: -0.0104 REMARK 3 T13: -0.0742 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 1.3221 L22: 0.6398 REMARK 3 L33: 1.5360 L12: 0.1162 REMARK 3 L13: -0.6797 L23: -0.6918 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: -0.0270 S13: -0.2285 REMARK 3 S21: -0.1103 S22: 0.0706 S23: 0.2913 REMARK 3 S31: 0.1347 S32: -0.0481 S33: -0.0485 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 48:94) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3762 4.6286 13.4407 REMARK 3 T TENSOR REMARK 3 T11: 0.0560 T22: 0.1280 REMARK 3 T33: 0.2289 T12: 0.0043 REMARK 3 T13: -0.0375 T23: 0.1137 REMARK 3 L TENSOR REMARK 3 L11: 0.5945 L22: 0.2625 REMARK 3 L33: 0.2446 L12: -0.0707 REMARK 3 L13: 0.0758 L23: -0.0110 REMARK 3 S TENSOR REMARK 3 S11: -0.0925 S12: -0.1011 S13: 0.0276 REMARK 3 S21: 0.0175 S22: 0.0753 S23: 0.1338 REMARK 3 S31: -0.0121 S32: -0.0271 S33: -0.0367 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 95:106) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9900 -3.8630 21.9012 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.1939 REMARK 3 T33: 0.1687 T12: 0.0831 REMARK 3 T13: 0.0431 T23: 0.1261 REMARK 3 L TENSOR REMARK 3 L11: 0.0740 L22: 0.6090 REMARK 3 L33: 0.5306 L12: 0.0872 REMARK 3 L13: 0.0797 L23: -0.3805 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: -0.1251 S13: -0.0575 REMARK 3 S21: 0.0735 S22: 0.1309 S23: 0.1529 REMARK 3 S31: -0.0114 S32: -0.1534 S33: -0.0600 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1290048312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21198 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2TRX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 1500., PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.09450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 20 O HOH B 2032 2.13 REMARK 500 O HOH B 2035 O HOH B 2036 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2044 DISTANCE = 6.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 73 OG REMARK 620 2 PRO A 75 O 117.1 REMARK 620 N 1 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1107 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YN1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST GAMMA- REMARK 900 PROTEOBACTERIA COMMON ANCESTOR (LGPCA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 2YNX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ARCHAEA REMARK 900 COMMON ANCESTOR (LACA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 2YOI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST REMARK 900 EUKARYOTES COMMON ANCESTOR (LECA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 2YPM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ANIMAL REMARK 900 AND FUNGI COMMON ANCESTOR (LAFCA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 3ZIV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ARCHAEA- REMARK 900 EUKARYOTES COMMON ANCESTOR (AECA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 4BA7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST REMARK 900 BACTERIA COMMON ANCESTOR (LBCA) FROM THE PRECAMBRIAN PERIOD DBREF 2YJ7 A 1 106 PDB 2YJ7 2YJ7 1 106 DBREF 2YJ7 B 1 106 PDB 2YJ7 2YJ7 1 106 SEQRES 1 A 106 MET SER VAL ILE GLU VAL THR ASP GLU ASN PHE GLU GLN SEQRES 2 A 106 GLU VAL LEU LYS SER ASP LYS PRO VAL LEU VAL ASP PHE SEQRES 3 A 106 TRP ALA PRO TRP CYS GLY PRO CYS ARG MET ILE ALA PRO SEQRES 4 A 106 ILE ILE GLU GLU LEU ALA LYS GLU TYR GLU GLY LYS VAL SEQRES 5 A 106 LYS VAL VAL LYS VAL ASN VAL ASP GLU ASN PRO ASN THR SEQRES 6 A 106 ALA ALA GLN TYR GLY ILE ARG SER ILE PRO THR LEU LEU SEQRES 7 A 106 LEU PHE LYS ASN GLY GLN VAL VAL ASP ARG LEU VAL GLY SEQRES 8 A 106 ALA GLN PRO LYS GLU ALA LEU LYS GLU ARG ILE ASP LYS SEQRES 9 A 106 HIS LEU SEQRES 1 B 106 MET SER VAL ILE GLU VAL THR ASP GLU ASN PHE GLU GLN SEQRES 2 B 106 GLU VAL LEU LYS SER ASP LYS PRO VAL LEU VAL ASP PHE SEQRES 3 B 106 TRP ALA PRO TRP CYS GLY PRO CYS ARG MET ILE ALA PRO SEQRES 4 B 106 ILE ILE GLU GLU LEU ALA LYS GLU TYR GLU GLY LYS VAL SEQRES 5 B 106 LYS VAL VAL LYS VAL ASN VAL ASP GLU ASN PRO ASN THR SEQRES 6 B 106 ALA ALA GLN TYR GLY ILE ARG SER ILE PRO THR LEU LEU SEQRES 7 B 106 LEU PHE LYS ASN GLY GLN VAL VAL ASP ARG LEU VAL GLY SEQRES 8 B 106 ALA GLN PRO LYS GLU ALA LEU LYS GLU ARG ILE ASP LYS SEQRES 9 B 106 HIS LEU HET NA A1107 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *261(H2 O) HELIX 1 1 PHE A 11 GLU A 14 1 4 HELIX 2 2 GLY A 32 GLU A 47 1 16 HELIX 3 3 PRO A 63 GLN A 68 1 6 HELIX 4 4 LYS A 95 ASP A 103 1 9 HELIX 5 5 PHE B 11 GLU B 14 1 4 HELIX 6 6 GLY B 32 GLU B 47 1 16 HELIX 7 7 PRO B 63 GLN B 68 1 6 HELIX 8 4 LYS B 95 ASP B 103 1 9 SHEET 1 AA 5 ILE A 4 GLU A 5 0 SHEET 2 AA 5 LYS A 53 ASN A 58 1 O VAL A 54 N ILE A 4 SHEET 3 AA 5 VAL A 22 TRP A 27 1 O LEU A 23 N VAL A 55 SHEET 4 AA 5 THR A 76 LYS A 81 -1 O THR A 76 N PHE A 26 SHEET 5 AA 5 GLN A 84 VAL A 90 -1 O GLN A 84 N LYS A 81 SHEET 1 BA 5 ILE B 4 GLU B 5 0 SHEET 2 BA 5 LYS B 53 ASN B 58 1 O VAL B 54 N ILE B 4 SHEET 3 BA 5 VAL B 22 TRP B 27 1 O LEU B 23 N VAL B 55 SHEET 4 BA 5 THR B 76 LYS B 81 -1 O THR B 76 N PHE B 26 SHEET 5 BA 5 GLN B 84 VAL B 90 -1 O GLN B 84 N LYS B 81 SSBOND 1 CYS A 31 CYS A 34 1555 1555 2.12 SSBOND 2 CYS B 31 CYS B 34 1555 1555 2.06 LINK OG SER A 73 NA NA A1107 1555 1555 2.92 LINK O PRO A 75 NA NA A1107 1555 1555 2.95 CISPEP 1 ILE A 74 PRO A 75 0 0.45 CISPEP 2 ILE B 74 PRO B 75 0 -0.81 SITE 1 AC1 5 SER A 73 ILE A 74 PRO A 75 VAL A 90 SITE 2 AC1 5 GLY A 91 CRYST1 55.072 30.189 59.004 90.00 116.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018158 0.000000 0.009176 0.00000 SCALE2 0.000000 0.033125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018989 0.00000