HEADER LIPID-BINDING PROTEIN 20-MAY-11 2YJL TITLE STRUCTURAL CHARACTERIZATION OF A SECRETIN PILOT PROTEIN TITLE 2 FROM THE TYPE III SECRETION SYSTEM (T3SS) OF PSEUDOMONAS TITLE 3 AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOENZYME S SYNTHESIS PROTEIN B; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 13-137; COMPND 5 SYNONYM: EXSB; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SEQUENCE ENCOMPASSES RESIDUES 17-141 OF COMPND 8 NATIVELY-EXPRESSED FULL-LENGTH PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA II KEYWDS LIPID-BINDING PROTEIN, PILOTIN EXPDTA X-RAY DIFFRACTION AUTHOR T.IZORE,C.PERDU,V.JOB,I.ATREE,E.FAUDRY,A.DESSEN REVDAT 2 12-OCT-11 2YJL 1 JRNL REVDAT 1 10-AUG-11 2YJL 0 JRNL AUTH T.IZORE,C.PERDU,V.JOB,I.ATREE,E.FAUDRY,A.DESSEN JRNL TITL STRUCTURAL CHARACTERIZATION AND MEMBRANE LOCALIZATION OF JRNL TITL 2 EXSB FROM THE TYPE III SECRETION SYSTEM (T3SS) OF JRNL TITL 3 PSEUDOMONAS AERUGINOSA JRNL REF J.MOL.BIOL. V. 413 236 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21839744 JRNL DOI 10.1016/J.JMB.2011.07.043 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0104 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 90.06 REMARK 3 NUMBER OF REFLECTIONS : 31431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.22138 REMARK 3 R VALUE (WORKING SET) : 0.21691 REMARK 3 FREE R VALUE : 0.26224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.9 REMARK 3 FREE R VALUE TEST SET COUNT : 3463 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.810 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.857 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1786 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.406 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.434 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.825 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.183 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21 REMARK 3 B22 (A**2) : 0.27 REMARK 3 B33 (A**2) : 0.08 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.55 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.679 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2783 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3806 ; 1.235 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 8.328 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;29.651 ;20.647 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 483 ;16.819 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 53 ;21.474 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2147 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 20 A 131 4 REMARK 3 1 B 20 B 131 4 REMARK 3 2 A 160 A 160 4 REMARK 3 2 B 160 B 160 4 REMARK 3 3 A 151 A 151 6 REMARK 3 3 B 151 B 151 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 768 ; 0.60 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 768 ; 0.60 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 768 ; 3.98 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 768 ; 3.98 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 20 A 131 4 REMARK 3 1 C 20 C 131 4 REMARK 3 2 A 160 A 160 4 REMARK 3 2 C 160 C 160 4 REMARK 3 3 A 151 A 151 6 REMARK 3 3 C 151 C 151 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 798 ; 0.59 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 C (A): 798 ; 0.59 ; 0.50 REMARK 3 LOOSE POSITIONAL 2 A (A): 5 ; 1.02 ; 5.00 REMARK 3 LOOSE POSITIONAL 2 C (A): 5 ; 1.02 ; 5.00 REMARK 3 MEDIUM THERMAL 2 A (A**2): 798 ; 2.82 ; 2.00 REMARK 3 MEDIUM THERMAL 2 C (A**2): 798 ; 2.82 ; 2.00 REMARK 3 LOOSE THERMAL 2 A (A**2): 5 ; 6.73 ; 10.00 REMARK 3 LOOSE THERMAL 2 C (A**2): 5 ; 6.73 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3387 19.3933 15.5935 REMARK 3 T TENSOR REMARK 3 T11: 0.0496 T22: 0.0475 REMARK 3 T33: 0.0565 T12: 0.0220 REMARK 3 T13: -0.0215 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 4.9657 L22: 1.0249 REMARK 3 L33: 1.0583 L12: -0.7131 REMARK 3 L13: 0.1191 L23: 0.3221 REMARK 3 S TENSOR REMARK 3 S11: -0.0957 S12: -0.0685 S13: 0.1599 REMARK 3 S21: 0.0561 S22: 0.0438 S23: -0.1654 REMARK 3 S31: -0.0112 S32: 0.0435 S33: 0.0519 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 13 C 137 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1564 -12.3879 35.9267 REMARK 3 T TENSOR REMARK 3 T11: 0.1315 T22: 0.0814 REMARK 3 T33: 0.0610 T12: -0.0263 REMARK 3 T13: 0.0349 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.2688 L22: 1.5701 REMARK 3 L33: 4.2063 L12: -0.1964 REMARK 3 L13: 1.5324 L23: -0.1722 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.1117 S13: -0.0437 REMARK 3 S21: 0.1368 S22: 0.0100 S23: -0.0595 REMARK 3 S31: -0.0716 S32: -0.0558 S33: -0.0376 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7085 3.7999 7.0457 REMARK 3 T TENSOR REMARK 3 T11: 0.0116 T22: 0.0237 REMARK 3 T33: 0.0303 T12: 0.0148 REMARK 3 T13: -0.0010 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.7419 L22: 1.7765 REMARK 3 L33: 3.0158 L12: 0.2636 REMARK 3 L13: -0.4338 L23: -0.9890 REMARK 3 S TENSOR REMARK 3 S11: -0.0866 S12: -0.0617 S13: -0.0061 REMARK 3 S21: 0.0618 S22: 0.0620 S23: -0.0791 REMARK 3 S31: 0.0768 S32: 0.1857 S33: 0.0246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2YJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-11. REMARK 100 THE PDBE ID CODE IS EBI-48338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 210) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35870 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.81 REMARK 200 RESOLUTION RANGE LOW (A) : 35.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 3 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.9 REMARK 200 R MERGE FOR SHELL (I) : 0.48 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS 0.1 M PH 8.5, AMMONIUM REMARK 280 SULFATE 1.5 M, GLYCEROL 10%. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.07750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.17900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.07750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.17900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 17 REMARK 465 SER A 18 REMARK 465 GLN A 19 REMARK 465 PRO A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 MET A 23 REMARK 465 ALA A 132 REMARK 465 ARG A 133 REMARK 465 PRO A 134 REMARK 465 GLU A 135 REMARK 465 GLU A 136 REMARK 465 ARG A 137 REMARK 465 SER A 138 REMARK 465 GLY A 139 REMARK 465 ASN A 140 REMARK 465 ASP A 141 REMARK 465 VAL B 17 REMARK 465 SER B 18 REMARK 465 GLN B 19 REMARK 465 PRO B 20 REMARK 465 ALA B 21 REMARK 465 PRO B 22 REMARK 465 MET B 23 REMARK 465 ARG B 137 REMARK 465 SER B 138 REMARK 465 GLY B 139 REMARK 465 ASN B 140 REMARK 465 ASP B 141 REMARK 465 VAL C 17 REMARK 465 SER C 18 REMARK 465 GLN C 19 REMARK 465 PRO C 20 REMARK 465 ALA C 21 REMARK 465 PRO C 22 REMARK 465 MET C 23 REMARK 465 SER C 24 REMARK 465 ALA C 131 REMARK 465 ALA C 132 REMARK 465 ARG C 133 REMARK 465 PRO C 134 REMARK 465 GLU C 135 REMARK 465 GLU C 136 REMARK 465 ARG C 137 REMARK 465 SER C 138 REMARK 465 GLY C 139 REMARK 465 ASN C 140 REMARK 465 ASP C 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA ALA A 131 O HOH A 2059 2.11 REMARK 500 C ALA A 131 O HOH A 2059 1.67 REMARK 500 OG SER B 24 O HOH B 2001 2.19 REMARK 500 CD ARG B 117 O HOH B 2050 2.19 REMARK 500 CG GLN C 54 O HOH C 2012 2.10 REMARK 500 O HOH A 2010 O HOH A 2016 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 115 99.38 -63.25 REMARK 500 GLN B 39 34.10 75.71 REMARK 500 ALA B 40 20.63 43.73 REMARK 500 GLN B 54 54.16 34.51 REMARK 500 ALA C 40 -9.11 75.94 REMARK 500 TRP C 107 117.51 -165.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 40 ARG B 41 147.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 152 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN ALTERNATIVE START CODON WAS IDENTIFIED IN THIS STUDY, ADDING REMARK 999 4 AMINO TERMINAL RESIDUES TO THE ANNOTATED SEQUENCE. DBREF 2YJL A 17 141 UNP P26994 EXSB_PSEAE 13 137 DBREF 2YJL B 17 141 UNP P26994 EXSB_PSEAE 13 137 DBREF 2YJL C 17 141 UNP P26994 EXSB_PSEAE 13 137 SEQRES 1 A 125 VAL SER GLN PRO ALA PRO MET SER PRO LYS VAL THR VAL SEQRES 2 A 125 GLY GLY SER VAL GLY GLY VAL SER LEU GLN ALA ARG GLN SEQRES 3 A 125 ALA GLN LEU ARG LEU ARG LEU TYR ALA VAL VAL GLN GLY SEQRES 4 A 125 ARG MET GLN THR ILE ALA GLU ARG ARG TYR ARG VAL SER SEQRES 5 A 125 GLY LEU PRO LEU ARG TYR ALA PHE ASP LEU GLU VAL ASP SEQRES 6 A 125 ARG LEU GLU GLY GLU ALA LEU TYR LEU ARG THR GLU LEU SEQRES 7 A 125 SER TRP VAL GLY VAL ALA ALA VAL GLN ALA SER ALA TRP SEQRES 8 A 125 GLN GLN VAL ALA ALA GLY VAL ASP GLU ARG VAL ARG LEU SEQRES 9 A 125 VAL ARG ARG ASP CYS PHE PRO ASN CYS THR ALA ALA ARG SEQRES 10 A 125 PRO GLU GLU ARG SER GLY ASN ASP SEQRES 1 B 125 VAL SER GLN PRO ALA PRO MET SER PRO LYS VAL THR VAL SEQRES 2 B 125 GLY GLY SER VAL GLY GLY VAL SER LEU GLN ALA ARG GLN SEQRES 3 B 125 ALA GLN LEU ARG LEU ARG LEU TYR ALA VAL VAL GLN GLY SEQRES 4 B 125 ARG MET GLN THR ILE ALA GLU ARG ARG TYR ARG VAL SER SEQRES 5 B 125 GLY LEU PRO LEU ARG TYR ALA PHE ASP LEU GLU VAL ASP SEQRES 6 B 125 ARG LEU GLU GLY GLU ALA LEU TYR LEU ARG THR GLU LEU SEQRES 7 B 125 SER TRP VAL GLY VAL ALA ALA VAL GLN ALA SER ALA TRP SEQRES 8 B 125 GLN GLN VAL ALA ALA GLY VAL ASP GLU ARG VAL ARG LEU SEQRES 9 B 125 VAL ARG ARG ASP CYS PHE PRO ASN CYS THR ALA ALA ARG SEQRES 10 B 125 PRO GLU GLU ARG SER GLY ASN ASP SEQRES 1 C 125 VAL SER GLN PRO ALA PRO MET SER PRO LYS VAL THR VAL SEQRES 2 C 125 GLY GLY SER VAL GLY GLY VAL SER LEU GLN ALA ARG GLN SEQRES 3 C 125 ALA GLN LEU ARG LEU ARG LEU TYR ALA VAL VAL GLN GLY SEQRES 4 C 125 ARG MET GLN THR ILE ALA GLU ARG ARG TYR ARG VAL SER SEQRES 5 C 125 GLY LEU PRO LEU ARG TYR ALA PHE ASP LEU GLU VAL ASP SEQRES 6 C 125 ARG LEU GLU GLY GLU ALA LEU TYR LEU ARG THR GLU LEU SEQRES 7 C 125 SER TRP VAL GLY VAL ALA ALA VAL GLN ALA SER ALA TRP SEQRES 8 C 125 GLN GLN VAL ALA ALA GLY VAL ASP GLU ARG VAL ARG LEU SEQRES 9 C 125 VAL ARG ARG ASP CYS PHE PRO ASN CYS THR ALA ALA ARG SEQRES 10 C 125 PRO GLU GLU ARG SER GLY ASN ASP HET SO4 A 150 5 HET SO4 A 151 5 HET NI A 160 1 HET SO4 C 151 5 HET SO4 C 152 5 HETNAM SO4 SULFATE ION HETNAM NI NICKEL (II) ION FORMUL 4 SO4 4(O4 S 2-) FORMUL 5 NI NI 2+ FORMUL 6 HOH *155(H2 O) HELIX 1 1 VAL A 80 GLU A 84 1 5 HELIX 2 2 VAL B 80 GLU B 84 1 5 HELIX 3 3 VAL C 80 GLU C 84 1 5 SHEET 1 AA 3 LEU A 72 GLU A 79 0 SHEET 2 AA 3 LYS A 26 GLY A 34 -1 O VAL A 27 N LEU A 78 SHEET 3 AA 3 ASP A 115 ARG A 119 1 O GLU A 116 N SER A 32 SHEET 1 AB 5 ARG A 56 VAL A 67 0 SHEET 2 AB 5 ALA A 43 VAL A 53 -1 O ALA A 43 N VAL A 67 SHEET 3 AB 5 LEU A 88 TRP A 96 -1 O TYR A 89 N TYR A 50 SHEET 4 AB 5 ALA A 104 VAL A 110 -1 O ALA A 104 N LEU A 94 SHEET 5 AB 5 VAL A 121 ARG A 122 -1 O VAL A 121 N SER A 105 SHEET 1 BA 3 LEU B 72 GLU B 79 0 SHEET 2 BA 3 LYS B 26 GLY B 34 -1 O VAL B 27 N LEU B 78 SHEET 3 BA 3 ASP B 115 ARG B 119 1 O GLU B 116 N SER B 32 SHEET 1 BB 5 ARG B 56 VAL B 67 0 SHEET 2 BB 5 ALA B 43 VAL B 53 -1 O ALA B 43 N VAL B 67 SHEET 3 BB 5 LEU B 88 TRP B 96 -1 O TYR B 89 N TYR B 50 SHEET 4 BB 5 ALA B 104 VAL B 110 -1 O ALA B 104 N LEU B 94 SHEET 5 BB 5 VAL B 121 ARG B 122 -1 O VAL B 121 N SER B 105 SHEET 1 CA 3 LEU C 72 GLU C 79 0 SHEET 2 CA 3 LYS C 26 GLY C 34 -1 O VAL C 27 N LEU C 78 SHEET 3 CA 3 ASP C 115 ARG C 119 1 O GLU C 116 N SER C 32 SHEET 1 CB 5 ARG C 56 VAL C 67 0 SHEET 2 CB 5 ALA C 43 VAL C 53 -1 O ALA C 43 N VAL C 67 SHEET 3 CB 5 LEU C 88 TRP C 96 -1 O TYR C 89 N TYR C 50 SHEET 4 CB 5 ALA C 104 VAL C 110 -1 O ALA C 104 N LEU C 94 SHEET 5 CB 5 VAL C 121 ARG C 122 -1 O VAL C 121 N SER C 105 SSBOND 1 CYS A 125 CYS A 129 1555 1555 2.06 SSBOND 2 CYS B 125 CYS B 129 1555 1555 2.14 SSBOND 3 CYS C 125 CYS C 129 1555 1555 2.04 CISPEP 1 LEU A 70 PRO A 71 0 14.86 CISPEP 2 PHE A 126 PRO A 127 0 6.88 CISPEP 3 LEU B 70 PRO B 71 0 12.76 CISPEP 4 PHE B 126 PRO B 127 0 -1.38 CISPEP 5 LEU C 70 PRO C 71 0 10.53 CISPEP 6 PHE C 126 PRO C 127 0 1.12 SITE 1 AC1 8 SER A 37 LEU A 38 GLN A 39 GLY A 69 SITE 2 AC1 8 LEU A 70 HOH A2008 HOH A2011 HOH B2057 SITE 1 AC2 2 VAL A 121 ARG A 122 SITE 1 AC3 2 GLY A 34 GLY A 35 SITE 1 AC4 3 LEU C 120 VAL C 121 ARG C 122 SITE 1 AC5 5 SER C 37 LEU C 38 GLN C 39 GLY C 69 SITE 2 AC5 5 LEU C 70 CRYST1 124.155 48.358 71.602 90.00 96.92 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008054 0.000000 0.000978 0.00000 SCALE2 0.000000 0.020679 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014069 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.512250 0.007620 -0.858810 33.57242 1 MTRIX2 2 0.056360 0.998100 -0.024760 -16.06363 1 MTRIX3 2 0.856990 -0.061090 -0.511700 20.68362 1 MTRIX1 3 -0.473040 0.018930 0.880840 -1.13611 1 MTRIX2 3 -0.010880 0.999570 -0.027330 -31.32739 1 MTRIX3 3 -0.880970 -0.022510 -0.472630 39.90014 1