HEADER RNA BINDING PROTEIN/TRANSCRIPTION 26-MAY-11 2YKA TITLE RRM DOMAIN OF MRNA EXPORT ADAPTOR REF2-I BOUND TO HVS ORF57 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA AND EXPORT FACTOR-BINDING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN, RESIDUES 53-155; COMPND 5 SYNONYM: REF2-I; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 52 KDA IMMEDIATE-EARLY PHOSPHOPROTEIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 103-120; COMPND 11 SYNONYM: ORF57 PROTEIN; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: REF/ALY INTERACTION FRAGMENT OF ORF57 PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RP; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET24B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SAIMIRIINE HERPESVIRUS 2; SOURCE 12 ORGANISM_COMMON: HVS; SOURCE 13 ORGANISM_TAXID: 10381; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RP; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1 KEYWDS RNA BINDING PROTEIN-TRANSCRIPTION COMPLEX, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.B.TUNNICLIFFE,G.M.HAUTBERGUE,P.KALRA,S.A.WILSON,A.P.GOLOVANOV REVDAT 2 26-FEB-14 2YKA 1 JRNL REVDAT 1 13-JUN-12 2YKA 0 JRNL AUTH R.B.TUNNICLIFFE,G.M.HAUTBERGUE,S.A.WILSON,P.KALRA, JRNL AUTH 2 A.P.GOLOVANOV JRNL TITL COMPETITIVE AND COOPERATIVE INTERACTIONS MEDIATE RNA JRNL TITL 2 TRANSFER FROM HERPESVIRUS SAIMIRI ORF57 TO THE MAMMALIAN JRNL TITL 3 EXPORT ADAPTOR ALYREF. JRNL REF PLOS PATHOG. V. 10 3907 2014 JRNL REFN ISSN 1553-7366 JRNL PMID 24550725 JRNL DOI 10.1371/JOURNAL.PPAT.1003907 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : P. GUNTERT ET AL. REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 22520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-11. REMARK 100 THE PDBE ID CODE IS EBI-47699. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.0 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 50 MM REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HSQC, HNCA, CBCA(CO)NH, REMARK 210 HNCACB, HNCO, HN(CA)CO, REMARK 210 TOCSY-HSQC, HBHA(CO)NH, REMARK 210 HCCH-TOCSY, CCH-TOCSY, REMARK 210 NOESY-HSQC HSQC, HNCA, CBCA( REMARK 210 CO)NH, HNCACB, HNCO, TOCSY- REMARK 210 HSQC, HBHA(CO)NH, NOESY- REMARK 210 HSQC; FILTERED 13C- REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 47 118.23 -163.46 REMARK 500 1 THR A 73 39.44 -140.44 REMARK 500 1 ASP A 83 177.53 -55.55 REMARK 500 1 THR B 106 174.31 -55.93 REMARK 500 2 GLN A 47 66.73 -101.06 REMARK 500 2 HIS A 58 41.73 -109.04 REMARK 500 2 SER A 63 84.80 -164.39 REMARK 500 2 THR A 73 26.24 -163.18 REMARK 500 2 ASP A 83 177.29 -57.55 REMARK 500 2 GLU A 157 33.43 -95.85 REMARK 500 2 PRO B 99 80.96 -69.75 REMARK 500 3 THR A 73 24.55 -160.35 REMARK 500 3 ASP A 83 177.46 -54.95 REMARK 500 3 PRO B 99 -173.56 -69.75 REMARK 500 3 SER B 102 37.24 -96.69 REMARK 500 4 SER A 63 49.65 -100.93 REMARK 500 4 GLU A 72 47.86 -89.77 REMARK 500 4 THR A 73 22.88 -156.68 REMARK 500 4 ASP A 83 177.57 -55.34 REMARK 500 4 THR B 106 174.49 -58.75 REMARK 500 5 GLN A 47 124.48 -170.07 REMARK 500 5 GLU A 72 41.71 -94.89 REMARK 500 5 THR A 73 30.96 -153.96 REMARK 500 5 ASP A 83 177.53 -55.39 REMARK 500 5 ASP A 155 63.71 61.05 REMARK 500 5 HIS A 160 61.97 -113.59 REMARK 500 5 LYS B 105 -75.87 -69.13 REMARK 500 5 SER B 107 -170.35 -60.88 REMARK 500 6 THR A 44 143.70 -170.72 REMARK 500 6 GLN A 47 120.91 -174.06 REMARK 500 6 MET A 49 -177.98 -66.51 REMARK 500 6 LEU A 60 33.86 -92.68 REMARK 500 6 GLU A 72 47.32 -90.42 REMARK 500 6 THR A 73 20.04 -151.19 REMARK 500 6 ASP A 83 177.31 -56.40 REMARK 500 6 GLU A 157 -71.19 -60.23 REMARK 500 6 HIS A 159 137.24 -173.79 REMARK 500 6 HIS A 160 -179.41 -61.26 REMARK 500 6 PRO B 99 86.21 -69.72 REMARK 500 7 LEU A 60 33.67 -92.18 REMARK 500 7 GLU A 72 36.54 -95.34 REMARK 500 7 ASP A 83 177.26 -54.89 REMARK 500 7 ASP A 109 -169.77 -103.19 REMARK 500 7 GLU A 157 32.83 -95.79 REMARK 500 7 SER B 103 63.85 -113.90 REMARK 500 7 LYS B 105 -172.37 -59.60 REMARK 500 7 THR B 106 175.22 -59.35 REMARK 500 7 SER B 107 -170.20 -60.82 REMARK 500 7 ARG B 119 55.04 -94.14 REMARK 500 8 ALA A 41 48.24 -107.97 REMARK 500 REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F3J RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF THE REF2-I MRNA EXPORT REMARK 900 FACTOR(RESIDUES 1-155). REMARK 999 REMARK 999 SEQUENCE REMARK 999 REF2-I RESIDUES 54-155. N-TERMINAL SEQUENCE MASMTGGQQMGRDP REMARK 999 AND C-TERMINAL LEHHHHHH FROM CLONING. REMARK 999 HVS ORF57 RESIDUES 103-120. N-TERMINAL SEQUENCE GPLGS FROM REMARK 999 CLONING. DBREF 2YKA A 53 155 UNP Q9JJW6 REFP2_MOUSE 53 155 DBREF 2YKA B 103 120 UNP P13199 IE63_SHV21 103 120 SEQADV 2YKA MET A 40 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA ALA A 41 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA SER A 42 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA MET A 43 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA THR A 44 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA GLY A 45 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA GLY A 46 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA GLN A 47 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA GLN A 48 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA MET A 49 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA GLY A 50 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA ARG A 51 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA ASP A 52 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA LEU A 156 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA GLU A 157 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA HIS A 158 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA HIS A 159 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA HIS A 160 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA HIS A 161 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA HIS A 162 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA HIS A 163 UNP Q9JJW6 EXPRESSION TAG SEQADV 2YKA GLY B 98 UNP P13199 EXPRESSION TAG SEQADV 2YKA PRO B 99 UNP P13199 EXPRESSION TAG SEQADV 2YKA LEU B 100 UNP P13199 EXPRESSION TAG SEQADV 2YKA GLY B 101 UNP P13199 EXPRESSION TAG SEQADV 2YKA SER B 102 UNP P13199 EXPRESSION TAG SEQRES 1 A 124 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG ASP SEQRES 2 A 124 PRO ASP LYS TRP GLN HIS ASP LEU PHE ASP SER GLY CYS SEQRES 3 A 124 GLY GLY GLY GLU GLY VAL GLU THR GLY ALA LYS LEU LEU SEQRES 4 A 124 VAL SER ASN LEU ASP PHE GLY VAL SER ASP ALA ASP ILE SEQRES 5 A 124 GLN GLU LEU PHE ALA GLU PHE GLY THR LEU LYS LYS ALA SEQRES 6 A 124 ALA VAL ASP TYR ASP ARG SER GLY ARG SER LEU GLY THR SEQRES 7 A 124 ALA ASP VAL HIS PHE GLU ARG ARG ALA ASP ALA LEU LYS SEQRES 8 A 124 ALA MET LYS GLN TYR LYS GLY VAL PRO LEU ASP GLY ARG SEQRES 9 A 124 PRO MET ASP ILE GLN LEU VAL ALA SER GLN ILE ASP LEU SEQRES 10 A 124 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 23 GLY PRO LEU GLY SER SER CYS LYS THR SER TRP ALA ASP SEQRES 2 B 23 ARG VAL ARG GLU ALA ALA ALA GLN ARG ARG HELIX 1 1 SER A 87 GLU A 97 1 11 HELIX 2 2 ARG A 124 LYS A 136 1 13 HELIX 3 3 SER B 107 ARG B 119 1 13 SHEET 1 AA 4 LEU A 101 TYR A 108 0 SHEET 2 AA 4 SER A 114 PHE A 122 -1 N LEU A 115 O ASP A 107 SHEET 3 AA 4 ALA A 75 SER A 80 -1 O ALA A 75 N PHE A 122 SHEET 4 AA 4 ASP A 146 VAL A 150 -1 O ASP A 146 N SER A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1