HEADER HYDROLASE 27-MAY-11 2YKK TITLE STRUCTURE OF A PAENIBACILLUS POLYMYXA XYLOGLUCANASE FROM GLYCOSIDE TITLE 2 HYDROLASE FAMILY 44 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEL44C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 36-559; COMPND 5 SYNONYM: XYLOGLUCANASE; COMPND 6 EC: 3.2.1.4, 3.2.1.151; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS POLYMYXA; SOURCE 3 ORGANISM_TAXID: 1406; SOURCE 4 STRAIN: GS01; SOURCE 5 ATCC: 832; SOURCE 6 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SHA273 KEYWDS HYDROLASE, GH44, XYLOGLUCAN, ENDO-GLUCANASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ARIZA,J.M.EKLOF,O.SPADIUT,W.A.OFFEN,S.M.ROBERTS,W.BESENMATTER, AUTHOR 2 E.P.FRIIS,M.SKJOT,K.S.WILSON,H.BRUMER,G.DAVIES REVDAT 4 20-DEC-23 2YKK 1 REMARK LINK REVDAT 3 28-JUN-17 2YKK 1 REMARK REVDAT 2 25-APR-12 2YKK 1 JRNL REMARK VERSN FORMUL REVDAT 1 22-JUN-11 2YKK 0 JRNL AUTH A.ARIZA,J.M.EKLOF,O.SPADIUT,W.A.OFFEN,S.M.ROBERTS, JRNL AUTH 2 W.BESENMATTER,E.P.FRIIS,M.SKJOT,K.S.WILSON,H.BRUMER,G.DAVIES JRNL TITL STRUCTURE AND ACTIVITY OF PAENIBACILLUS POLYMYXA JRNL TITL 2 XYLOGLUCANASE FROM GLYCOSIDE HYDROLASE FAMILY 44. JRNL REF J.BIOL.CHEM. V. 286 33890 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21795708 JRNL DOI 10.1074/JBC.M111.262345 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0086 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 158.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 57808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3079 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3904 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 229 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 695 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4299 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5871 ; 1.641 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 566 ; 6.103 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;38.068 ;25.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 727 ;12.452 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;11.754 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3314 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT. RESIDUES 1-6 AND 519-524 ARE DISORDERED. THERE IS REMARK 3 UNMODELLED DENSITY NEAR TO GLY 396 AND TYR 286. REMARK 4 REMARK 4 2YKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1290048359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60915 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 42.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2E0P REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 3350, 0.2M LITHIUM REMARK 280 SULPHATE, 0.1M BIS TRIS PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.52367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.04733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.04733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.52367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 164 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 191 TO TYR REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 VAL A 2 REMARK 465 HIS A 3 REMARK 465 GLY A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ASN A 519 REMARK 465 ASP A 520 REMARK 465 THR A 521 REMARK 465 SER A 522 REMARK 465 PRO A 523 REMARK 465 VAL A 524 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 53 O HOH A 2119 1.81 REMARK 500 O HOH A 2212 O HOH A 2475 2.11 REMARK 500 OD1 ASN A 58 O HOH A 2119 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 271 CB GLN A 271 CG -0.164 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 151 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 -79.97 -94.86 REMARK 500 LEU A 34 -125.71 -95.66 REMARK 500 GLN A 67 19.54 57.29 REMARK 500 ASP A 185 -147.31 62.42 REMARK 500 ASP A 241 29.07 -151.16 REMARK 500 ASN A 302 -168.48 -101.42 REMARK 500 ASN A 331 34.81 -140.43 REMARK 500 TYR A 349 75.84 -150.49 REMARK 500 ASN A 410 62.82 -159.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2091 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A2197 DISTANCE = 6.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1520 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 56 OE2 REMARK 620 2 GLU A 56 OE1 52.9 REMARK 620 3 ASP A 151 O 98.5 86.8 REMARK 620 4 ASP A 154 OD1 157.5 149.7 86.7 REMARK 620 5 TYR A 156 O 89.1 100.2 171.8 85.2 REMARK 620 6 HOH A2127 O 128.3 76.8 89.0 73.4 88.6 REMARK 620 7 HOH A2128 O 80.1 131.1 87.6 78.2 90.8 151.6 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AD" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 1519 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1520 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1521 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1522 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1523 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1524 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YIH RELATED DB: PDB REMARK 900 STRUCTURE OF A PAENIBACILLUS POLYMYXA XYLOGLUCANASE FROM GH FAMILY REMARK 900 44 WITH XYLOGLUCAN REMARK 900 RELATED ID: 2YJQ RELATED DB: PDB REMARK 900 STRUCTURE OF A PAENIBACILLUS POLYMYXA XYLOGLUCANASE FROM GLYCOSIDE REMARK 900 HYDROLASE FAMILY 44 REMARK 900 RELATED ID: 3ZQ9 RELATED DB: PDB REMARK 900 STRUCTURE OF A PAENIBACILLUS POLYMYXA XYLOGLUCANASE FROM GLYCOSIDE REMARK 900 HYDROLASE FAMILY 44 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE IN DATABASE IS SEQUENCE 2 FROM PATENT US 6815192, REMARK 999 WHICH IS FOR A XYLOGLUCANASE-BETA-MANNANASE (CEL44C-MAN26A), REMARK 999 AND THIS STRUCTURE IS FOR THE XYLOGLUCANASE PORTION. REMARK 999 THE CONFLICTS WITH UNIPROT ENTRY Q1A2D0 LISTED BELOW WHICH ARE NOT REMARK 999 DUE TO ENGINEERED MUTATIONS MAY REPRESENT NATURAL VARIATIONS BETWEEN REMARK 999 DIFFERENT STRAINS. THE SEQUENCE FOR THIS STRUCTURE IS PUBLISHED IN REMARK 999 PATENT US 6815192, AND GENBANK ENTRY AAW12876.1. DBREF 2YKK A 1 524 UNP Q1A2D0 Q1A2D0_PAEPO 36 559 SEQADV 2YKK PHE A 17 UNP Q1A2D0 SER 52 SEE REMARK 999 SEQADV 2YKK ASP A 19 UNP Q1A2D0 GLU 54 SEE REMARK 999 SEQADV 2YKK ALA A 129 UNP Q1A2D0 LYS 164 ENGINEERED MUTATION SEQADV 2YKK ALA A 144 UNP Q1A2D0 THR 179 SEE REMARK 999 SEQADV 2YKK TYR A 156 UNP Q1A2D0 ARG 191 ENGINEERED MUTATION SEQADV 2YKK VAL A 228 UNP Q1A2D0 ILE 263 SEE REMARK 999 SEQADV 2YKK VAL A 272 UNP Q1A2D0 ALA 307 SEE REMARK 999 SEQADV 2YKK ALA A 403 UNP Q1A2D0 PRO 438 SEE REMARK 999 SEQADV 2YKK ILE A 473 UNP Q1A2D0 SER 508 SEE REMARK 999 SEQADV 2YKK ASP A 520 UNP Q1A2D0 TYR 555 SEE REMARK 999 SEQRES 1 A 524 VAL VAL HIS GLY GLN THR ALA LYS THR ILE THR ILE LYS SEQRES 2 A 524 VAL ASP THR PHE LYS ASP ARG LYS PRO ILE SER PRO TYR SEQRES 3 A 524 ILE TYR GLY THR ASN GLN ASP LEU ALA GLY ASP GLU ASN SEQRES 4 A 524 MET ALA ALA ARG ARG LEU GLY GLY ASN ARG MET THR GLY SEQRES 5 A 524 TYR ASN TRP GLU ASN ASN MET SER ASN ALA GLY SER ASP SEQRES 6 A 524 TRP GLN GLN SER SER ASP ASN TYR LEU CYS SER ASN GLY SEQRES 7 A 524 GLY LEU THR GLN ALA GLU CYS GLU LYS PRO GLY ALA VAL SEQRES 8 A 524 THR THR SER PHE HIS ASP GLN SER LEU LYS LEU GLY THR SEQRES 9 A 524 TYR SER LEU VAL THR LEU PRO MET ALA GLY TYR VAL ALA SEQRES 10 A 524 LYS ASP GLY ASN GLY SER VAL GLN GLU SER GLU ALA ALA SEQRES 11 A 524 PRO SER ALA ARG TRP ASN GLN VAL VAL ASN ALA LYS ASN SEQRES 12 A 524 ALA PRO PHE GLN LEU GLN PRO ASP LEU ASN ASP ASN TYR SEQRES 13 A 524 VAL TYR VAL ASP GLU PHE VAL HIS PHE LEU VAL ASN LYS SEQRES 14 A 524 TYR GLY THR ALA SER THR LYS ALA GLY VAL LYS GLY TYR SEQRES 15 A 524 ALA LEU ASP ASN GLU PRO ALA LEU TRP SER HIS THR HIS SEQRES 16 A 524 PRO ARG ILE HIS GLY GLU LYS VAL GLY ALA LYS GLU LEU SEQRES 17 A 524 VAL ASP ARG SER VAL SER LEU SER LYS ALA VAL LYS ALA SEQRES 18 A 524 ILE ASP ALA GLY ALA GLU VAL PHE GLY PRO VAL LEU TYR SEQRES 19 A 524 GLY PHE GLY ALA TYR LYS ASP LEU GLN THR ALA PRO ASP SEQRES 20 A 524 TRP ASP SER VAL LYS GLY ASN TYR SER TRP PHE VAL ASP SEQRES 21 A 524 TYR TYR LEU ASP GLN MET ARG LEU SER SER GLN VAL GLU SEQRES 22 A 524 GLY LYS ARG LEU LEU ASP VAL PHE ASP VAL HIS TRP TYR SEQRES 23 A 524 PRO GLU ALA MET GLY GLY GLY ILE ARG ILE THR ASN GLU SEQRES 24 A 524 VAL GLY ASN ASP GLU THR LYS LYS ALA ARG MET GLN ALA SEQRES 25 A 524 PRO ARG THR LEU TRP ASP PRO THR TYR LYS GLU ASP SER SEQRES 26 A 524 TRP ILE ALA GLN TRP ASN SER GLU PHE LEU PRO ILE LEU SEQRES 27 A 524 PRO ARG LEU LYS GLN SER VAL ASP LYS TYR TYR PRO GLY SEQRES 28 A 524 THR LYS LEU ALA MET THR GLU TYR SER TYR GLY GLY GLU SEQRES 29 A 524 ASN ASP ILE SER GLY GLY ILE ALA MET THR ASP VAL LEU SEQRES 30 A 524 GLY ILE LEU GLY LYS ASN ASP VAL TYR MET ALA ASN TYR SEQRES 31 A 524 TRP LYS LEU LYS ASP GLY VAL ASN ASN TYR VAL SER ALA SEQRES 32 A 524 ALA TYR LYS LEU TYR ARG ASN TYR ASP GLY LYS ASN SER SEQRES 33 A 524 THR PHE GLY ASP THR SER VAL SER ALA GLN THR SER ASP SEQRES 34 A 524 ILE VAL ASN SER SER VAL HIS ALA SER VAL THR ASN ALA SEQRES 35 A 524 SER ASP LYS GLU LEU HIS LEU VAL VAL MET ASN LYS SER SEQRES 36 A 524 MET ASP SER ALA PHE ASP ALA GLN PHE ASP LEU SER GLY SEQRES 37 A 524 ALA LYS THR TYR ILE SER GLY LYS VAL TRP GLY PHE ASP SEQRES 38 A 524 LYS ASN SER SER GLN ILE LYS GLU ALA ALA PRO ILE THR SEQRES 39 A 524 GLN ILE SER GLY ASN ARG PHE THR TYR THR VAL PRO PRO SEQRES 40 A 524 LEU THR ALA TYR HIS ILE VAL LEU THR THR GLY ASN ASP SEQRES 41 A 524 THR SER PRO VAL HET BTB A1519 14 HET CA A1520 1 HET CL A1521 1 HET SO4 A1522 5 HET SO4 A1523 5 HET PG4 A1524 13 HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN BTB BIS-TRIS BUFFER FORMUL 2 BTB C8 H19 N O5 FORMUL 3 CA CA 2+ FORMUL 4 CL CL 1- FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 PG4 C8 H18 O5 FORMUL 8 HOH *695(H2 O) HELIX 1 1 SER A 24 ILE A 27 5 4 HELIX 2 2 GLY A 47 THR A 51 5 5 HELIX 3 3 GLY A 63 TRP A 66 5 4 HELIX 4 4 ASN A 72 GLY A 78 1 7 HELIX 5 5 THR A 81 GLU A 86 1 6 HELIX 6 6 GLY A 89 GLY A 103 1 15 HELIX 7 7 GLN A 125 ALA A 129 5 5 HELIX 8 8 VAL A 159 GLY A 171 1 13 HELIX 9 9 GLU A 187 ALA A 189 5 3 HELIX 10 10 LEU A 190 HIS A 195 1 6 HELIX 11 11 GLY A 204 ASP A 223 1 20 HELIX 12 12 GLY A 235 LEU A 242 1 8 HELIX 13 13 ASP A 247 LYS A 252 1 6 HELIX 14 14 TRP A 257 GLY A 274 1 18 HELIX 15 15 ASN A 302 ALA A 312 1 11 HELIX 16 16 PRO A 313 TRP A 317 5 5 HELIX 17 17 SER A 325 SER A 332 1 8 HELIX 18 18 GLU A 333 LEU A 335 5 3 HELIX 19 19 PRO A 336 TYR A 349 1 14 HELIX 20 20 ASP A 366 ASN A 383 1 18 HELIX 21 21 ASN A 398 ASN A 410 1 13 SHEET 1 AA 2 LYS A 21 PRO A 22 0 SHEET 2 AA 2 THR A 421 THR A 427 -1 O SER A 422 N LYS A 21 SHEET 1 AB 7 SER A 484 ILE A 493 0 SHEET 2 AB 7 SER A 474 ASP A 481 -1 O GLY A 475 N ILE A 493 SHEET 3 AB 7 THR A 509 THR A 516 -1 O ALA A 510 N PHE A 480 SHEET 4 AB 7 GLU A 446 ASN A 453 -1 O LEU A 447 N LEU A 515 SHEET 5 AB 7 SER A 433 VAL A 439 -1 O SER A 434 N MET A 452 SHEET 6 AB 7 THR A 421 THR A 427 -1 O THR A 421 N VAL A 439 SHEET 7 AB 7 LYS A 21 PRO A 22 -1 O LYS A 21 N SER A 422 SHEET 1 AC 9 SER A 484 ILE A 493 0 SHEET 2 AC 9 SER A 474 ASP A 481 -1 O GLY A 475 N ILE A 493 SHEET 3 AC 9 THR A 509 THR A 516 -1 O ALA A 510 N PHE A 480 SHEET 4 AC 9 GLU A 446 ASN A 453 -1 O LEU A 447 N LEU A 515 SHEET 5 AC 9 SER A 433 VAL A 439 -1 O SER A 434 N MET A 452 SHEET 6 AC 9 THR A 421 THR A 427 -1 O THR A 421 N VAL A 439 SHEET 7 AC 9 LYS A 8 ASP A 15 -1 O LYS A 13 N GLN A 426 SHEET 8 AC 9 PHE A 460 SER A 467 1 O ASP A 461 N ILE A 10 SHEET 9 AC 9 ARG A 500 VAL A 505 -1 O PHE A 501 N PHE A 464 SHEET 1 AD 9 GLY A 29 THR A 30 0 SHEET 2 AD 9 ALA A 42 LEU A 45 1 O ALA A 42 N THR A 30 SHEET 3 AD 9 TYR A 105 LEU A 110 1 O TYR A 105 N ARG A 43 SHEET 4 AD 9 GLY A 181 LEU A 184 1 O GLY A 181 N VAL A 108 SHEET 5 AD 9 GLU A 227 LEU A 233 1 O GLU A 227 N TYR A 182 SHEET 6 AD 9 VAL A 280 TRP A 285 1 O VAL A 280 N GLY A 230 SHEET 7 AD 9 LYS A 353 TYR A 359 1 O LYS A 353 N PHE A 281 SHEET 8 AD 9 MET A 387 TYR A 390 1 O MET A 387 N MET A 356 SHEET 9 AD 9 GLY A 29 THR A 30 1 O GLY A 29 N TYR A 390 SHEET 1 AE 3 SER A 60 ASN A 61 0 SHEET 2 AE 3 SER A 69 ASP A 71 -1 O ASP A 71 N SER A 60 SHEET 3 AE 3 GLY A 122 SER A 123 -1 O GLY A 122 N SER A 70 SHEET 1 AF 3 TYR A 115 ALA A 117 0 SHEET 2 AF 3 TRP A 135 VAL A 139 -1 O ASN A 136 N VAL A 116 SHEET 3 AF 3 TYR A 156 TYR A 158 1 O VAL A 157 N VAL A 139 SHEET 1 AG 2 MET A 290 GLY A 291 0 SHEET 2 AG 2 ILE A 294 ARG A 295 -1 O ILE A 294 N GLY A 291 SSBOND 1 CYS A 75 CYS A 85 1555 1555 2.05 LINK OE2 GLU A 56 CA CA A1520 1555 1555 2.45 LINK OE1 GLU A 56 CA CA A1520 1555 1555 2.45 LINK O ASP A 151 CA CA A1520 1555 1555 2.35 LINK OD1 ASP A 154 CA CA A1520 1555 1555 2.40 LINK O TYR A 156 CA CA A1520 1555 1555 2.32 LINK CA CA A1520 O HOH A2127 1555 1555 2.38 LINK CA CA A1520 O HOH A2128 1555 1555 2.44 CISPEP 1 ALA A 130 PRO A 131 0 -0.74 CISPEP 2 GLY A 230 PRO A 231 0 0.67 CISPEP 3 LEU A 335 PRO A 336 0 4.11 SITE 1 AC1 11 GLY A 47 ASN A 48 ASP A 65 GLU A 187 SITE 2 AC1 11 TYR A 286 GLU A 358 TRP A 391 LEU A 393 SITE 3 AC1 11 HOH A2102 HOH A2571 HOH A2689 SITE 1 AC2 6 GLU A 56 ASP A 151 ASP A 154 TYR A 156 SITE 2 AC2 6 HOH A2127 HOH A2128 SITE 1 AC3 6 GLU A 187 PRO A 188 ALA A 189 LEU A 233 SITE 2 AC3 6 TYR A 234 ALA A 238 SITE 1 AC4 6 PRO A 25 ARG A 409 HOH A2208 HOH A2690 SITE 2 AC4 6 HOH A2691 HOH A2692 SITE 1 AC5 4 GLN A 147 LEU A 148 GLN A 149 HOH A2304 SITE 1 AC6 4 HIS A 193 TYR A 234 GLN A 243 THR A 244 CRYST1 84.170 84.170 157.571 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011881 0.006859 0.000000 0.00000 SCALE2 0.000000 0.013719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006346 0.00000