data_2YKT # _entry.id 2YKT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YKT pdb_00002ykt 10.2210/pdb2ykt/pdb PDBE EBI-48459 ? ? WWPDB D_1290048459 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-09-07 2 'Structure model' 1 1 2011-10-26 3 'Structure model' 1 2 2015-04-01 4 'Structure model' 1 3 2023-12-20 5 'Structure model' 1 4 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 5 'Structure model' pdbx_entry_details 9 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YKT _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-05-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1WDZ unspecified 'CRYSTAL STRUCTURE OF RCB DOMAIN OF IRSP53' PDB 1Y2O unspecified 'STRUCTURE OF N-TERMINAL DOMAIN IRSP53/BAIAP2' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'de Groot, J.C.' 1 'Schlueter, K.' 2 'Carius, Y.' 3 'Quedenau, C.' 4 'Vingadassalom, D.' 5 'Faix, J.' 6 'Weiss, S.M.' 7 'Reichelt, J.' 8 'Standfuss-Gabisch, C.' 9 'Lesser, C.F.' 10 'Leong, J.M.' 11 'Heinz, D.W.' 12 'Buessow, K.' 13 'Stradal, T.E.B.' 14 # _citation.id primary _citation.title 'Structural Basis for Complex Formation between Human Irsp53 and the Translocated Intimin Receptor Tir of Enterohemorrhagic E. Coli.' _citation.journal_abbrev Structure _citation.journal_volume 19 _citation.page_first 1294 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21893288 _citation.pdbx_database_id_DOI 10.1016/J.STR.2011.06.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'De Groot, J.C.' 1 ? primary 'Schluter, K.' 2 ? primary 'Carius, Y.' 3 ? primary 'Quedenau, C.' 4 ? primary 'Vingadassalom, D.' 5 ? primary 'Faix, J.' 6 ? primary 'Weiss, S.M.' 7 ? primary 'Reichelt, J.' 8 ? primary 'Standfuss-Gabisch, C.' 9 ? primary 'Lesser, C.F.' 10 ? primary 'Leong, J.M.' 11 ? primary 'Heinz, D.W.' 12 ? primary 'Bussow, K.' 13 ? primary 'Stradal, T.E.B.' 14 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2' 28849.842 1 ? ? 'I-BAR DOMAIN, RESIDUES 1-250' ? 2 polymer syn 'TRANSLOCATED INTIMIN RECEPTOR PROTEIN' 1291.410 1 ? ? 'RESIDUES 452-463' 'C-TERMINAL AMIDE' 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 46 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;BAI-ASSOCIATED PROTEIN 2, BAI1-ASSOCIATED PROTEIN 2, PROTEIN BAP2, FAS LIGAND-ASSOCIATED FACTOR 3, FLAF3, INSULIN RECEPTOR SUBSTRATE P53/P58, IRS-58, IRSP53/58, INSULIN RECEPTOR SUBSTRATE PROTEIN OF 53 KDA, IRSP53, INSULIN RECEPTOR SUBSTRATE P53 ; 2 'TRANSLOCATED INTIMIN RECEPTOR' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSTMSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLF QMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKY SDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQACADPSKIP ERAVQLMQQVASN ; ;GSTMSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLF QMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKY SDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQACADPSKIP ERAVQLMQQVASN ; A ? 2 'polypeptide(L)' no yes 'GTVQNPYADVKT(NH2)' GTVQNPYADVKTX B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 THR n 1 4 MET n 1 5 SER n 1 6 LEU n 1 7 SER n 1 8 ARG n 1 9 SER n 1 10 GLU n 1 11 GLU n 1 12 MET n 1 13 HIS n 1 14 ARG n 1 15 LEU n 1 16 THR n 1 17 GLU n 1 18 ASN n 1 19 VAL n 1 20 TYR n 1 21 LYS n 1 22 THR n 1 23 ILE n 1 24 MET n 1 25 GLU n 1 26 GLN n 1 27 PHE n 1 28 ASN n 1 29 PRO n 1 30 SER n 1 31 LEU n 1 32 ARG n 1 33 ASN n 1 34 PHE n 1 35 ILE n 1 36 ALA n 1 37 MET n 1 38 GLY n 1 39 LYS n 1 40 ASN n 1 41 TYR n 1 42 GLU n 1 43 LYS n 1 44 ALA n 1 45 LEU n 1 46 ALA n 1 47 GLY n 1 48 VAL n 1 49 THR n 1 50 TYR n 1 51 ALA n 1 52 ALA n 1 53 LYS n 1 54 GLY n 1 55 TYR n 1 56 PHE n 1 57 ASP n 1 58 ALA n 1 59 LEU n 1 60 VAL n 1 61 LYS n 1 62 MET n 1 63 GLY n 1 64 GLU n 1 65 LEU n 1 66 ALA n 1 67 SER n 1 68 GLU n 1 69 SER n 1 70 GLN n 1 71 GLY n 1 72 SER n 1 73 LYS n 1 74 GLU n 1 75 LEU n 1 76 GLY n 1 77 ASP n 1 78 VAL n 1 79 LEU n 1 80 PHE n 1 81 GLN n 1 82 MET n 1 83 ALA n 1 84 GLU n 1 85 VAL n 1 86 HIS n 1 87 ARG n 1 88 GLN n 1 89 ILE n 1 90 GLN n 1 91 ASN n 1 92 GLN n 1 93 LEU n 1 94 GLU n 1 95 GLU n 1 96 MET n 1 97 LEU n 1 98 LYS n 1 99 SER n 1 100 PHE n 1 101 HIS n 1 102 ASN n 1 103 GLU n 1 104 LEU n 1 105 LEU n 1 106 THR n 1 107 GLN n 1 108 LEU n 1 109 GLU n 1 110 GLN n 1 111 LYS n 1 112 VAL n 1 113 GLU n 1 114 LEU n 1 115 ASP n 1 116 SER n 1 117 ARG n 1 118 TYR n 1 119 LEU n 1 120 SER n 1 121 ALA n 1 122 ALA n 1 123 LEU n 1 124 LYS n 1 125 LYS n 1 126 TYR n 1 127 GLN n 1 128 THR n 1 129 GLU n 1 130 GLN n 1 131 ARG n 1 132 SER n 1 133 LYS n 1 134 GLY n 1 135 ASP n 1 136 ALA n 1 137 LEU n 1 138 ASP n 1 139 LYS n 1 140 CYS n 1 141 GLN n 1 142 ALA n 1 143 GLU n 1 144 LEU n 1 145 LYS n 1 146 LYS n 1 147 LEU n 1 148 ARG n 1 149 LYS n 1 150 LYS n 1 151 SER n 1 152 GLN n 1 153 GLY n 1 154 SER n 1 155 LYS n 1 156 ASN n 1 157 PRO n 1 158 GLN n 1 159 LYS n 1 160 TYR n 1 161 SER n 1 162 ASP n 1 163 LYS n 1 164 GLU n 1 165 LEU n 1 166 GLN n 1 167 TYR n 1 168 ILE n 1 169 ASP n 1 170 ALA n 1 171 ILE n 1 172 SER n 1 173 ASN n 1 174 LYS n 1 175 GLN n 1 176 GLY n 1 177 GLU n 1 178 LEU n 1 179 GLU n 1 180 ASN n 1 181 TYR n 1 182 VAL n 1 183 SER n 1 184 ASP n 1 185 GLY n 1 186 TYR n 1 187 LYS n 1 188 THR n 1 189 ALA n 1 190 LEU n 1 191 THR n 1 192 GLU n 1 193 GLU n 1 194 ARG n 1 195 ARG n 1 196 ARG n 1 197 PHE n 1 198 CYS n 1 199 PHE n 1 200 LEU n 1 201 VAL n 1 202 GLU n 1 203 LYS n 1 204 GLN n 1 205 CYS n 1 206 ALA n 1 207 VAL n 1 208 ALA n 1 209 LYS n 1 210 ASN n 1 211 SER n 1 212 ALA n 1 213 ALA n 1 214 TYR n 1 215 HIS n 1 216 SER n 1 217 LYS n 1 218 GLY n 1 219 LYS n 1 220 GLU n 1 221 LEU n 1 222 LEU n 1 223 ALA n 1 224 GLN n 1 225 LYS n 1 226 LEU n 1 227 PRO n 1 228 LEU n 1 229 TRP n 1 230 GLN n 1 231 GLN n 1 232 ALA n 1 233 CYS n 1 234 ALA n 1 235 ASP n 1 236 PRO n 1 237 SER n 1 238 LYS n 1 239 ILE n 1 240 PRO n 1 241 GLU n 1 242 ARG n 1 243 ALA n 1 244 VAL n 1 245 GLN n 1 246 LEU n 1 247 MET n 1 248 GLN n 1 249 GLN n 1 250 VAL n 1 251 ALA n 1 252 SER n 1 253 ASN n 2 1 GLY n 2 2 THR n 2 3 VAL n 2 4 GLN n 2 5 ASN n 2 6 PRO n 2 7 TYR n 2 8 ALA n 2 9 ASP n 2 10 VAL n 2 11 LYS n 2 12 THR n 2 13 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain SCS1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PQTEV _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'ESCHERICHIA COLI O157\:H7' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 544404 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 THR 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 SER 5 2 ? ? ? A . n A 1 6 LEU 6 3 ? ? ? A . n A 1 7 SER 7 4 4 SER SER A . n A 1 8 ARG 8 5 5 ARG ARG A . n A 1 9 SER 9 6 6 SER SER A . n A 1 10 GLU 10 7 7 GLU GLU A . n A 1 11 GLU 11 8 8 GLU GLU A . n A 1 12 MET 12 9 9 MET MET A . n A 1 13 HIS 13 10 10 HIS HIS A . n A 1 14 ARG 14 11 11 ARG ARG A . n A 1 15 LEU 15 12 12 LEU LEU A . n A 1 16 THR 16 13 13 THR THR A . n A 1 17 GLU 17 14 14 GLU GLU A . n A 1 18 ASN 18 15 15 ASN ASN A . n A 1 19 VAL 19 16 16 VAL VAL A . n A 1 20 TYR 20 17 17 TYR TYR A . n A 1 21 LYS 21 18 18 LYS LYS A . n A 1 22 THR 22 19 19 THR THR A . n A 1 23 ILE 23 20 20 ILE ILE A . n A 1 24 MET 24 21 21 MET MET A . n A 1 25 GLU 25 22 22 GLU GLU A . n A 1 26 GLN 26 23 23 GLN GLN A . n A 1 27 PHE 27 24 24 PHE PHE A . n A 1 28 ASN 28 25 25 ASN ASN A . n A 1 29 PRO 29 26 26 PRO PRO A . n A 1 30 SER 30 27 27 SER SER A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 ARG 32 29 29 ARG ARG A . n A 1 33 ASN 33 30 30 ASN ASN A . n A 1 34 PHE 34 31 31 PHE PHE A . n A 1 35 ILE 35 32 32 ILE ILE A . n A 1 36 ALA 36 33 33 ALA ALA A . n A 1 37 MET 37 34 34 MET MET A . n A 1 38 GLY 38 35 35 GLY GLY A . n A 1 39 LYS 39 36 36 LYS LYS A . n A 1 40 ASN 40 37 37 ASN ASN A . n A 1 41 TYR 41 38 38 TYR TYR A . n A 1 42 GLU 42 39 39 GLU GLU A . n A 1 43 LYS 43 40 40 LYS LYS A . n A 1 44 ALA 44 41 41 ALA ALA A . n A 1 45 LEU 45 42 42 LEU LEU A . n A 1 46 ALA 46 43 43 ALA ALA A . n A 1 47 GLY 47 44 44 GLY GLY A . n A 1 48 VAL 48 45 45 VAL VAL A . n A 1 49 THR 49 46 46 THR THR A . n A 1 50 TYR 50 47 47 TYR TYR A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 ALA 52 49 49 ALA ALA A . n A 1 53 LYS 53 50 50 LYS LYS A . n A 1 54 GLY 54 51 51 GLY GLY A . n A 1 55 TYR 55 52 52 TYR TYR A . n A 1 56 PHE 56 53 53 PHE PHE A . n A 1 57 ASP 57 54 54 ASP ASP A . n A 1 58 ALA 58 55 55 ALA ALA A . n A 1 59 LEU 59 56 56 LEU LEU A . n A 1 60 VAL 60 57 57 VAL VAL A . n A 1 61 LYS 61 58 58 LYS LYS A . n A 1 62 MET 62 59 59 MET MET A . n A 1 63 GLY 63 60 60 GLY GLY A . n A 1 64 GLU 64 61 61 GLU GLU A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 SER 67 64 64 SER SER A . n A 1 68 GLU 68 65 65 GLU GLU A . n A 1 69 SER 69 66 66 SER SER A . n A 1 70 GLN 70 67 67 GLN GLN A . n A 1 71 GLY 71 68 68 GLY GLY A . n A 1 72 SER 72 69 69 SER SER A . n A 1 73 LYS 73 70 70 LYS LYS A . n A 1 74 GLU 74 71 71 GLU GLU A . n A 1 75 LEU 75 72 72 LEU LEU A . n A 1 76 GLY 76 73 73 GLY GLY A . n A 1 77 ASP 77 74 74 ASP ASP A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 LEU 79 76 76 LEU LEU A . n A 1 80 PHE 80 77 77 PHE PHE A . n A 1 81 GLN 81 78 78 GLN GLN A . n A 1 82 MET 82 79 79 MET MET A . n A 1 83 ALA 83 80 80 ALA ALA A . n A 1 84 GLU 84 81 81 GLU GLU A . n A 1 85 VAL 85 82 82 VAL VAL A . n A 1 86 HIS 86 83 83 HIS HIS A . n A 1 87 ARG 87 84 84 ARG ARG A . n A 1 88 GLN 88 85 85 GLN GLN A . n A 1 89 ILE 89 86 86 ILE ILE A . n A 1 90 GLN 90 87 87 GLN GLN A . n A 1 91 ASN 91 88 88 ASN ASN A . n A 1 92 GLN 92 89 89 GLN GLN A . n A 1 93 LEU 93 90 90 LEU LEU A . n A 1 94 GLU 94 91 91 GLU GLU A . n A 1 95 GLU 95 92 92 GLU GLU A . n A 1 96 MET 96 93 93 MET MET A . n A 1 97 LEU 97 94 94 LEU LEU A . n A 1 98 LYS 98 95 95 LYS LYS A . n A 1 99 SER 99 96 96 SER SER A . n A 1 100 PHE 100 97 97 PHE PHE A . n A 1 101 HIS 101 98 98 HIS HIS A . n A 1 102 ASN 102 99 99 ASN ASN A . n A 1 103 GLU 103 100 100 GLU GLU A . n A 1 104 LEU 104 101 101 LEU LEU A . n A 1 105 LEU 105 102 102 LEU LEU A . n A 1 106 THR 106 103 103 THR THR A . n A 1 107 GLN 107 104 104 GLN GLN A . n A 1 108 LEU 108 105 105 LEU LEU A . n A 1 109 GLU 109 106 106 GLU GLU A . n A 1 110 GLN 110 107 107 GLN GLN A . n A 1 111 LYS 111 108 108 LYS LYS A . n A 1 112 VAL 112 109 109 VAL VAL A . n A 1 113 GLU 113 110 110 GLU GLU A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 ASP 115 112 112 ASP ASP A . n A 1 116 SER 116 113 113 SER SER A . n A 1 117 ARG 117 114 114 ARG ARG A . n A 1 118 TYR 118 115 115 TYR TYR A . n A 1 119 LEU 119 116 116 LEU LEU A . n A 1 120 SER 120 117 117 SER SER A . n A 1 121 ALA 121 118 118 ALA ALA A . n A 1 122 ALA 122 119 119 ALA ALA A . n A 1 123 LEU 123 120 120 LEU LEU A . n A 1 124 LYS 124 121 121 LYS LYS A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 TYR 126 123 123 TYR TYR A . n A 1 127 GLN 127 124 124 GLN GLN A . n A 1 128 THR 128 125 125 THR THR A . n A 1 129 GLU 129 126 126 GLU GLU A . n A 1 130 GLN 130 127 127 GLN GLN A . n A 1 131 ARG 131 128 128 ARG ARG A . n A 1 132 SER 132 129 129 SER SER A . n A 1 133 LYS 133 130 130 LYS LYS A . n A 1 134 GLY 134 131 131 GLY GLY A . n A 1 135 ASP 135 132 132 ASP ASP A . n A 1 136 ALA 136 133 133 ALA ALA A . n A 1 137 LEU 137 134 134 LEU LEU A . n A 1 138 ASP 138 135 135 ASP ASP A . n A 1 139 LYS 139 136 136 LYS LYS A . n A 1 140 CYS 140 137 137 CYS CYS A . n A 1 141 GLN 141 138 138 GLN GLN A . n A 1 142 ALA 142 139 139 ALA ALA A . n A 1 143 GLU 143 140 140 GLU GLU A . n A 1 144 LEU 144 141 141 LEU LEU A . n A 1 145 LYS 145 142 142 LYS LYS A . n A 1 146 LYS 146 143 143 LYS LYS A . n A 1 147 LEU 147 144 144 LEU LEU A . n A 1 148 ARG 148 145 145 ARG ARG A . n A 1 149 LYS 149 146 146 LYS LYS A . n A 1 150 LYS 150 147 147 LYS LYS A . n A 1 151 SER 151 148 ? ? ? A . n A 1 152 GLN 152 149 ? ? ? A . n A 1 153 GLY 153 150 ? ? ? A . n A 1 154 SER 154 151 ? ? ? A . n A 1 155 LYS 155 152 ? ? ? A . n A 1 156 ASN 156 153 ? ? ? A . n A 1 157 PRO 157 154 154 PRO PRO A . n A 1 158 GLN 158 155 155 GLN GLN A . n A 1 159 LYS 159 156 156 LYS LYS A . n A 1 160 TYR 160 157 157 TYR TYR A . n A 1 161 SER 161 158 158 SER SER A . n A 1 162 ASP 162 159 159 ASP ASP A . n A 1 163 LYS 163 160 160 LYS LYS A . n A 1 164 GLU 164 161 161 GLU GLU A . n A 1 165 LEU 165 162 162 LEU LEU A . n A 1 166 GLN 166 163 163 GLN GLN A . n A 1 167 TYR 167 164 164 TYR TYR A . n A 1 168 ILE 168 165 165 ILE ILE A . n A 1 169 ASP 169 166 166 ASP ASP A . n A 1 170 ALA 170 167 167 ALA ALA A . n A 1 171 ILE 171 168 168 ILE ILE A . n A 1 172 SER 172 169 169 SER SER A . n A 1 173 ASN 173 170 170 ASN ASN A . n A 1 174 LYS 174 171 171 LYS LYS A . n A 1 175 GLN 175 172 172 GLN GLN A . n A 1 176 GLY 176 173 173 GLY GLY A . n A 1 177 GLU 177 174 174 GLU GLU A . n A 1 178 LEU 178 175 175 LEU LEU A . n A 1 179 GLU 179 176 176 GLU GLU A . n A 1 180 ASN 180 177 177 ASN ASN A . n A 1 181 TYR 181 178 178 TYR TYR A . n A 1 182 VAL 182 179 179 VAL VAL A . n A 1 183 SER 183 180 180 SER SER A . n A 1 184 ASP 184 181 181 ASP ASP A . n A 1 185 GLY 185 182 182 GLY GLY A . n A 1 186 TYR 186 183 183 TYR TYR A . n A 1 187 LYS 187 184 184 LYS LYS A . n A 1 188 THR 188 185 185 THR THR A . n A 1 189 ALA 189 186 186 ALA ALA A . n A 1 190 LEU 190 187 187 LEU LEU A . n A 1 191 THR 191 188 188 THR THR A . n A 1 192 GLU 192 189 189 GLU GLU A . n A 1 193 GLU 193 190 190 GLU GLU A . n A 1 194 ARG 194 191 191 ARG ARG A . n A 1 195 ARG 195 192 192 ARG ARG A . n A 1 196 ARG 196 193 193 ARG ARG A . n A 1 197 PHE 197 194 194 PHE PHE A . n A 1 198 CYS 198 195 195 CYS CYS A . n A 1 199 PHE 199 196 196 PHE PHE A . n A 1 200 LEU 200 197 197 LEU LEU A . n A 1 201 VAL 201 198 198 VAL VAL A . n A 1 202 GLU 202 199 199 GLU GLU A . n A 1 203 LYS 203 200 200 LYS LYS A . n A 1 204 GLN 204 201 201 GLN GLN A . n A 1 205 CYS 205 202 202 CYS CYS A . n A 1 206 ALA 206 203 203 ALA ALA A . n A 1 207 VAL 207 204 204 VAL VAL A . n A 1 208 ALA 208 205 205 ALA ALA A . n A 1 209 LYS 209 206 206 LYS LYS A . n A 1 210 ASN 210 207 207 ASN ASN A . n A 1 211 SER 211 208 208 SER SER A . n A 1 212 ALA 212 209 209 ALA ALA A . n A 1 213 ALA 213 210 210 ALA ALA A . n A 1 214 TYR 214 211 211 TYR TYR A . n A 1 215 HIS 215 212 212 HIS HIS A . n A 1 216 SER 216 213 213 SER SER A . n A 1 217 LYS 217 214 214 LYS LYS A . n A 1 218 GLY 218 215 215 GLY GLY A . n A 1 219 LYS 219 216 216 LYS LYS A . n A 1 220 GLU 220 217 217 GLU GLU A . n A 1 221 LEU 221 218 218 LEU LEU A . n A 1 222 LEU 222 219 219 LEU LEU A . n A 1 223 ALA 223 220 220 ALA ALA A . n A 1 224 GLN 224 221 221 GLN GLN A . n A 1 225 LYS 225 222 222 LYS LYS A . n A 1 226 LEU 226 223 223 LEU LEU A . n A 1 227 PRO 227 224 224 PRO PRO A . n A 1 228 LEU 228 225 225 LEU LEU A . n A 1 229 TRP 229 226 226 TRP TRP A . n A 1 230 GLN 230 227 227 GLN GLN A . n A 1 231 GLN 231 228 228 GLN GLN A . n A 1 232 ALA 232 229 229 ALA ALA A . n A 1 233 CYS 233 230 230 CYS CYS A . n A 1 234 ALA 234 231 231 ALA ALA A . n A 1 235 ASP 235 232 232 ASP ASP A . n A 1 236 PRO 236 233 233 PRO PRO A . n A 1 237 SER 237 234 234 SER SER A . n A 1 238 LYS 238 235 ? ? ? A . n A 1 239 ILE 239 236 ? ? ? A . n A 1 240 PRO 240 237 ? ? ? A . n A 1 241 GLU 241 238 ? ? ? A . n A 1 242 ARG 242 239 ? ? ? A . n A 1 243 ALA 243 240 ? ? ? A . n A 1 244 VAL 244 241 ? ? ? A . n A 1 245 GLN 245 242 ? ? ? A . n A 1 246 LEU 246 243 ? ? ? A . n A 1 247 MET 247 244 ? ? ? A . n A 1 248 GLN 248 245 ? ? ? A . n A 1 249 GLN 249 246 ? ? ? A . n A 1 250 VAL 250 247 ? ? ? A . n A 1 251 ALA 251 248 ? ? ? A . n A 1 252 SER 252 249 ? ? ? A . n A 1 253 ASN 253 250 ? ? ? A . n B 2 1 GLY 1 452 452 GLY GLY B . n B 2 2 THR 2 453 453 THR THR B . n B 2 3 VAL 3 454 454 VAL VAL B . n B 2 4 GLN 4 455 455 GLN GLN B . n B 2 5 ASN 5 456 456 ASN ASN B . n B 2 6 PRO 6 457 457 PRO PRO B . n B 2 7 TYR 7 458 458 TYR TYR B . n B 2 8 ALA 8 459 459 ALA ALA B . n B 2 9 ASP 9 460 460 ASP ASP B . n B 2 10 VAL 10 461 461 VAL VAL B . n B 2 11 LYS 11 462 462 LYS LYS B . n B 2 12 THR 12 463 463 THR THR B . n B 2 13 NH2 13 464 464 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 1235 1235 SO4 SO4 A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . E 4 HOH 1 2001 2001 HOH HOH B . E 4 HOH 2 2002 2002 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 147 ? CG ? A LYS 150 CG 2 1 Y 1 A LYS 147 ? CD ? A LYS 150 CD 3 1 Y 1 A LYS 147 ? CE ? A LYS 150 CE 4 1 Y 1 A LYS 147 ? NZ ? A LYS 150 NZ 5 1 Y 1 A SER 234 ? OG ? A SER 237 OG # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0109 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 2YKT _cell.length_a 88.354 _cell.length_b 187.362 _cell.length_c 36.806 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YKT _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.entry_id 2YKT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_percent_sol 54.63 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '16% (W/V) PEG 3350, 0.3M AMMONIUM SULPHATE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2009-08-21 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator KMC-2 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_wavelength 0.9184 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YKT _reflns.observed_criterion_sigma_I 3.1 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 9.44 _reflns.d_resolution_high 2.11 _reflns.number_obs 18190 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.13 _reflns.B_iso_Wilson_estimate 41.8 _reflns.pdbx_redundancy 12.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.11 _reflns_shell.d_res_low 2.16 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.53 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.13 _reflns_shell.pdbx_redundancy 7.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YKT _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17006 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 9.44 _refine.ls_d_res_high 2.11 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.23559 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23336 _refine.ls_R_factor_R_free 0.27604 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 895 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 41.5 _refine.aniso_B[1][1] 0.53 _refine.aniso_B[2][2] -3.19 _refine.aniso_B[3][3] 2.66 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 1Y2O' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.235 _refine.pdbx_overall_ESU_R_Free 0.203 _refine.overall_SU_ML 0.168 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 14.071 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1898 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 46 _refine_hist.number_atoms_total 1949 _refine_hist.d_res_high 2.11 _refine_hist.d_res_low 9.44 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.022 0.022 ? 1978 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.901 1.970 ? 2657 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.042 5.000 ? 248 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.105 25.248 ? 101 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.397 15.000 ? 393 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.169 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.133 0.200 ? 284 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1479 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.215 1.500 ? 1198 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.131 2.000 ? 1911 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.506 3.000 ? 780 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 5.757 4.500 ? 739 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.110 _refine_ls_shell.d_res_low 2.162 _refine_ls_shell.number_reflns_R_work 1208 _refine_ls_shell.R_factor_R_work 0.300 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.331 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 2YKT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2YKT _struct.title 'Crystal structure of the I-BAR domain of IRSp53 (BAIAP2) in complex with an EHEC derived Tir peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YKT _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'SIGNALING PROTEIN, NPY MOTIF, BINDING POCKET' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP BAIP2_HUMAN 1 ? ? Q9UQB8 ? 2 UNP C6UYL8_ECO5T 2 ? ? C6UYL8 ? 3 PDB 2YKT 2 ? ? 2YKT ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YKT A 4 ? 253 ? Q9UQB8 1 ? 250 ? 1 250 2 2 2YKT B 1 ? 12 ? C6UYL8 452 ? 463 ? 452 463 3 3 2YKT B 13 ? 13 ? 2YKT 464 ? 464 ? 464 464 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YKT GLY A 1 ? UNP Q9UQB8 ? ? 'expression tag' -2 1 1 2YKT SER A 2 ? UNP Q9UQB8 ? ? 'expression tag' -1 2 1 2YKT THR A 3 ? UNP Q9UQB8 ? ? 'expression tag' 0 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8460 ? 1 MORE -85.7 ? 1 'SSA (A^2)' 26130 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 36.8060000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 8 ? GLU A 68 ? ARG A 5 GLU A 65 1 ? 61 HELX_P HELX_P2 2 LYS A 73 ? LYS A 149 ? LYS A 70 LYS A 146 1 ? 77 HELX_P HELX_P3 3 ASP A 162 ? ALA A 232 ? ASP A 159 ALA A 229 1 ? 71 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 198 SG ? ? ? 1_555 A CYS 233 SG ? ? A CYS 195 A CYS 230 4_556 ? ? ? ? ? ? ? 2.766 ? ? covale1 covale both ? B THR 12 C ? ? ? 1_555 B NH2 13 N ? ? B THR 463 B NH2 464 1_555 ? ? ? ? ? ? ? 1.386 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 B 13 ? THR B 12 ? NH2 B 464 ? 1_555 THR B 463 ? 1_555 . . THR 7 NH2 None 'Terminal amidation' 2 CYS A 198 ? CYS A 233 ? CYS A 195 ? 1_555 CYS A 230 ? 4_556 SG SG . . . None 'Disulfide bridge' # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SO4 _struct_site.pdbx_auth_seq_id 1235 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 1235' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 13 ? HIS A 10 . ? 1_555 ? 2 AC1 3 LYS A 124 ? LYS A 121 . ? 3_554 ? 3 AC1 3 ARG A 131 ? ARG A 128 . ? 1_555 ? # _pdbx_entry_details.entry_id 2YKT _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 101 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -123.20 _pdbx_validate_torsion.psi -60.97 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -14.2686 -20.8222 8.3271 0.0468 0.0762 0.0484 -0.0009 -0.0021 0.0385 0.1545 1.4354 0.5792 0.0844 0.0639 0.7818 0.0089 0.0040 -0.0059 -0.0010 -0.0215 0.0138 -0.0143 -0.0332 0.0125 'X-RAY DIFFRACTION' 2 ? refined -15.2655 -33.4750 9.6503 0.2688 0.2581 0.3048 -0.0336 0.0107 0.0169 1.9221 2.0994 4.5517 1.3310 -0.3109 0.1187 -0.0320 -0.1410 -0.4760 0.0845 0.0571 0.0886 0.2664 0.1707 -0.0251 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 4 ? ? A 234 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 452 ? ? B 463 ? ? ? ? # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A THR 0 ? A THR 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A SER 2 ? A SER 5 6 1 Y 1 A LEU 3 ? A LEU 6 7 1 Y 1 A SER 148 ? A SER 151 8 1 Y 1 A GLN 149 ? A GLN 152 9 1 Y 1 A GLY 150 ? A GLY 153 10 1 Y 1 A SER 151 ? A SER 154 11 1 Y 1 A LYS 152 ? A LYS 155 12 1 Y 1 A ASN 153 ? A ASN 156 13 1 Y 1 A LYS 235 ? A LYS 238 14 1 Y 1 A ILE 236 ? A ILE 239 15 1 Y 1 A PRO 237 ? A PRO 240 16 1 Y 1 A GLU 238 ? A GLU 241 17 1 Y 1 A ARG 239 ? A ARG 242 18 1 Y 1 A ALA 240 ? A ALA 243 19 1 Y 1 A VAL 241 ? A VAL 244 20 1 Y 1 A GLN 242 ? A GLN 245 21 1 Y 1 A LEU 243 ? A LEU 246 22 1 Y 1 A MET 244 ? A MET 247 23 1 Y 1 A GLN 245 ? A GLN 248 24 1 Y 1 A GLN 246 ? A GLN 249 25 1 Y 1 A VAL 247 ? A VAL 250 26 1 Y 1 A ALA 248 ? A ALA 251 27 1 Y 1 A SER 249 ? A SER 252 28 1 Y 1 A ASN 250 ? A ASN 253 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 NH2 N N N N 250 NH2 HN1 H N N 251 NH2 HN2 H N N 252 PHE N N N N 253 PHE CA C N S 254 PHE C C N N 255 PHE O O N N 256 PHE CB C N N 257 PHE CG C Y N 258 PHE CD1 C Y N 259 PHE CD2 C Y N 260 PHE CE1 C Y N 261 PHE CE2 C Y N 262 PHE CZ C Y N 263 PHE OXT O N N 264 PHE H H N N 265 PHE H2 H N N 266 PHE HA H N N 267 PHE HB2 H N N 268 PHE HB3 H N N 269 PHE HD1 H N N 270 PHE HD2 H N N 271 PHE HE1 H N N 272 PHE HE2 H N N 273 PHE HZ H N N 274 PHE HXT H N N 275 PRO N N N N 276 PRO CA C N S 277 PRO C C N N 278 PRO O O N N 279 PRO CB C N N 280 PRO CG C N N 281 PRO CD C N N 282 PRO OXT O N N 283 PRO H H N N 284 PRO HA H N N 285 PRO HB2 H N N 286 PRO HB3 H N N 287 PRO HG2 H N N 288 PRO HG3 H N N 289 PRO HD2 H N N 290 PRO HD3 H N N 291 PRO HXT H N N 292 SER N N N N 293 SER CA C N S 294 SER C C N N 295 SER O O N N 296 SER CB C N N 297 SER OG O N N 298 SER OXT O N N 299 SER H H N N 300 SER H2 H N N 301 SER HA H N N 302 SER HB2 H N N 303 SER HB3 H N N 304 SER HG H N N 305 SER HXT H N N 306 SO4 S S N N 307 SO4 O1 O N N 308 SO4 O2 O N N 309 SO4 O3 O N N 310 SO4 O4 O N N 311 THR N N N N 312 THR CA C N S 313 THR C C N N 314 THR O O N N 315 THR CB C N R 316 THR OG1 O N N 317 THR CG2 C N N 318 THR OXT O N N 319 THR H H N N 320 THR H2 H N N 321 THR HA H N N 322 THR HB H N N 323 THR HG1 H N N 324 THR HG21 H N N 325 THR HG22 H N N 326 THR HG23 H N N 327 THR HXT H N N 328 TRP N N N N 329 TRP CA C N S 330 TRP C C N N 331 TRP O O N N 332 TRP CB C N N 333 TRP CG C Y N 334 TRP CD1 C Y N 335 TRP CD2 C Y N 336 TRP NE1 N Y N 337 TRP CE2 C Y N 338 TRP CE3 C Y N 339 TRP CZ2 C Y N 340 TRP CZ3 C Y N 341 TRP CH2 C Y N 342 TRP OXT O N N 343 TRP H H N N 344 TRP H2 H N N 345 TRP HA H N N 346 TRP HB2 H N N 347 TRP HB3 H N N 348 TRP HD1 H N N 349 TRP HE1 H N N 350 TRP HE3 H N N 351 TRP HZ2 H N N 352 TRP HZ3 H N N 353 TRP HH2 H N N 354 TRP HXT H N N 355 TYR N N N N 356 TYR CA C N S 357 TYR C C N N 358 TYR O O N N 359 TYR CB C N N 360 TYR CG C Y N 361 TYR CD1 C Y N 362 TYR CD2 C Y N 363 TYR CE1 C Y N 364 TYR CE2 C Y N 365 TYR CZ C Y N 366 TYR OH O N N 367 TYR OXT O N N 368 TYR H H N N 369 TYR H2 H N N 370 TYR HA H N N 371 TYR HB2 H N N 372 TYR HB3 H N N 373 TYR HD1 H N N 374 TYR HD2 H N N 375 TYR HE1 H N N 376 TYR HE2 H N N 377 TYR HH H N N 378 TYR HXT H N N 379 VAL N N N N 380 VAL CA C N S 381 VAL C C N N 382 VAL O O N N 383 VAL CB C N N 384 VAL CG1 C N N 385 VAL CG2 C N N 386 VAL OXT O N N 387 VAL H H N N 388 VAL H2 H N N 389 VAL HA H N N 390 VAL HB H N N 391 VAL HG11 H N N 392 VAL HG12 H N N 393 VAL HG13 H N N 394 VAL HG21 H N N 395 VAL HG22 H N N 396 VAL HG23 H N N 397 VAL HXT H N N 398 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 NH2 N HN1 sing N N 237 NH2 N HN2 sing N N 238 PHE N CA sing N N 239 PHE N H sing N N 240 PHE N H2 sing N N 241 PHE CA C sing N N 242 PHE CA CB sing N N 243 PHE CA HA sing N N 244 PHE C O doub N N 245 PHE C OXT sing N N 246 PHE CB CG sing N N 247 PHE CB HB2 sing N N 248 PHE CB HB3 sing N N 249 PHE CG CD1 doub Y N 250 PHE CG CD2 sing Y N 251 PHE CD1 CE1 sing Y N 252 PHE CD1 HD1 sing N N 253 PHE CD2 CE2 doub Y N 254 PHE CD2 HD2 sing N N 255 PHE CE1 CZ doub Y N 256 PHE CE1 HE1 sing N N 257 PHE CE2 CZ sing Y N 258 PHE CE2 HE2 sing N N 259 PHE CZ HZ sing N N 260 PHE OXT HXT sing N N 261 PRO N CA sing N N 262 PRO N CD sing N N 263 PRO N H sing N N 264 PRO CA C sing N N 265 PRO CA CB sing N N 266 PRO CA HA sing N N 267 PRO C O doub N N 268 PRO C OXT sing N N 269 PRO CB CG sing N N 270 PRO CB HB2 sing N N 271 PRO CB HB3 sing N N 272 PRO CG CD sing N N 273 PRO CG HG2 sing N N 274 PRO CG HG3 sing N N 275 PRO CD HD2 sing N N 276 PRO CD HD3 sing N N 277 PRO OXT HXT sing N N 278 SER N CA sing N N 279 SER N H sing N N 280 SER N H2 sing N N 281 SER CA C sing N N 282 SER CA CB sing N N 283 SER CA HA sing N N 284 SER C O doub N N 285 SER C OXT sing N N 286 SER CB OG sing N N 287 SER CB HB2 sing N N 288 SER CB HB3 sing N N 289 SER OG HG sing N N 290 SER OXT HXT sing N N 291 SO4 S O1 doub N N 292 SO4 S O2 doub N N 293 SO4 S O3 sing N N 294 SO4 S O4 sing N N 295 THR N CA sing N N 296 THR N H sing N N 297 THR N H2 sing N N 298 THR CA C sing N N 299 THR CA CB sing N N 300 THR CA HA sing N N 301 THR C O doub N N 302 THR C OXT sing N N 303 THR CB OG1 sing N N 304 THR CB CG2 sing N N 305 THR CB HB sing N N 306 THR OG1 HG1 sing N N 307 THR CG2 HG21 sing N N 308 THR CG2 HG22 sing N N 309 THR CG2 HG23 sing N N 310 THR OXT HXT sing N N 311 TRP N CA sing N N 312 TRP N H sing N N 313 TRP N H2 sing N N 314 TRP CA C sing N N 315 TRP CA CB sing N N 316 TRP CA HA sing N N 317 TRP C O doub N N 318 TRP C OXT sing N N 319 TRP CB CG sing N N 320 TRP CB HB2 sing N N 321 TRP CB HB3 sing N N 322 TRP CG CD1 doub Y N 323 TRP CG CD2 sing Y N 324 TRP CD1 NE1 sing Y N 325 TRP CD1 HD1 sing N N 326 TRP CD2 CE2 doub Y N 327 TRP CD2 CE3 sing Y N 328 TRP NE1 CE2 sing Y N 329 TRP NE1 HE1 sing N N 330 TRP CE2 CZ2 sing Y N 331 TRP CE3 CZ3 doub Y N 332 TRP CE3 HE3 sing N N 333 TRP CZ2 CH2 doub Y N 334 TRP CZ2 HZ2 sing N N 335 TRP CZ3 CH2 sing Y N 336 TRP CZ3 HZ3 sing N N 337 TRP CH2 HH2 sing N N 338 TRP OXT HXT sing N N 339 TYR N CA sing N N 340 TYR N H sing N N 341 TYR N H2 sing N N 342 TYR CA C sing N N 343 TYR CA CB sing N N 344 TYR CA HA sing N N 345 TYR C O doub N N 346 TYR C OXT sing N N 347 TYR CB CG sing N N 348 TYR CB HB2 sing N N 349 TYR CB HB3 sing N N 350 TYR CG CD1 doub Y N 351 TYR CG CD2 sing Y N 352 TYR CD1 CE1 sing Y N 353 TYR CD1 HD1 sing N N 354 TYR CD2 CE2 doub Y N 355 TYR CD2 HD2 sing N N 356 TYR CE1 CZ doub Y N 357 TYR CE1 HE1 sing N N 358 TYR CE2 CZ sing Y N 359 TYR CE2 HE2 sing N N 360 TYR CZ OH sing N N 361 TYR OH HH sing N N 362 TYR OXT HXT sing N N 363 VAL N CA sing N N 364 VAL N H sing N N 365 VAL N H2 sing N N 366 VAL CA C sing N N 367 VAL CA CB sing N N 368 VAL CA HA sing N N 369 VAL C O doub N N 370 VAL C OXT sing N N 371 VAL CB CG1 sing N N 372 VAL CB CG2 sing N N 373 VAL CB HB sing N N 374 VAL CG1 HG11 sing N N 375 VAL CG1 HG12 sing N N 376 VAL CG1 HG13 sing N N 377 VAL CG2 HG21 sing N N 378 VAL CG2 HG22 sing N N 379 VAL CG2 HG23 sing N N 380 VAL OXT HXT sing N N 381 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Y2O _pdbx_initial_refinement_model.details 'PDB ENTRY 1Y2O' # _atom_sites.entry_id 2YKT _atom_sites.fract_transf_matrix[1][1] 0.011318 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005337 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027169 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_