HEADER HYDROLASE 31-MAY-11 2YL6 TITLE INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR TITLE 2 INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-N-ACETYLHEXOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 181-614; COMPND 5 SYNONYM: GLYCOSIDE HYDROLASE; COMPND 6 EC: 3.2.1.52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS PEPTIDOGLYCAN-ANCHOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.PLUVINAGE,M.A.HIGGINS,D.W.ABBOTT,C.ROBB,A.B.DALIA,L.DENG, AUTHOR 2 J.N.WEISER,T.B.PARSONS,A.J.FAIRBANKS,D.J.VOCADLO,A.B.BORASTON REVDAT 2 23-NOV-11 2YL6 1 AUTHOR JRNL REVDAT 1 14-SEP-11 2YL6 0 JRNL AUTH B.PLUVINAGE,M.A.HIGGINS,D.W.ABBOTT,C.ROBB,A.B.DALIA,L.DENG, JRNL AUTH 2 J.N.WEISER,T.B.PARSONS,A.J.FAIRBANKS,D.J.VOCADLO, JRNL AUTH 3 A.B.BORASTON JRNL TITL INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND JRNL TITL 2 MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS. JRNL TITL 3 JRNL REF STRUCTURE V. 19 1603 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 22078560 JRNL DOI 10.1016/J.STR.2011.08.011 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 93.98 REMARK 3 NUMBER OF REFLECTIONS : 56802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18784 REMARK 3 R VALUE (WORKING SET) : 0.18614 REMARK 3 FREE R VALUE : 0.21942 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 3031 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.599 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.640 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3737 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.395 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.412 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 628 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.437 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15 REMARK 3 B22 (A**2) : -0.09 REMARK 3 B33 (A**2) : -0.06 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.103 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3758 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5094 ; 1.073 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 5.506 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;33.797 ;25.337 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 644 ;12.123 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;12.609 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2919 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2306 ; 0.423 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3724 ; 0.793 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1452 ; 1.520 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1370 ; 2.535 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2YL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-11. REMARK 100 THE PDBE ID CODE IS EBI-45048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEIT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59835 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.60 REMARK 200 RESOLUTION RANGE LOW (A) : 19.93 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.9 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.4 REMARK 200 R MERGE FOR SHELL (I) : 0.39 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.14300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.49950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.21650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.14300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.49950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.21650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.14300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.49950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.21650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.14300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.49950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.21650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2370 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2371 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2579 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 225 93.76 -162.88 REMARK 500 ASP A 226 -73.74 66.66 REMARK 500 LYS A 350 -36.78 74.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN -2-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A -1-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1618 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1619 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1620 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1621 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1622 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1623 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1624 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1625 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1626 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ETE A1627 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YL8 RELATED DB: PDB REMARK 900 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND REMARK 900 MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND REMARK 900 HYDROLYSIS REMARK 900 RELATED ID: 2YL9 RELATED DB: PDB REMARK 900 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND REMARK 900 MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND REMARK 900 HYDROLYSIS REMARK 900 RELATED ID: 2YL5 RELATED DB: PDB REMARK 900 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND REMARK 900 MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND REMARK 900 HYDROLYSIS REMARK 900 RELATED ID: 2YLA RELATED DB: PDB REMARK 900 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND REMARK 900 MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND REMARK 900 HYDROLYSIS DBREF 2YL6 A 181 614 UNP P49610 STRH_STRPN 181 614 SEQRES 1 A 434 ASN GLU LYS LEU ALA LYS LYS LYS ILE VAL SER ILE ASP SEQRES 2 A 434 ALA GLY ARG LYS TYR PHE SER PRO GLU GLN LEU LYS GLU SEQRES 3 A 434 ILE ILE ASP LYS ALA LYS HIS TYR GLY TYR THR ASP LEU SEQRES 4 A 434 HIS LEU LEU VAL GLY ASN ASP GLY LEU ARG PHE MET LEU SEQRES 5 A 434 ASP ASP MET SER ILE THR ALA ASN GLY LYS THR TYR ALA SEQRES 6 A 434 SER ASP ASP VAL LYS ARG ALA ILE GLU LYS GLY THR ASN SEQRES 7 A 434 ASP TYR TYR ASN ASP PRO ASN GLY ASN HIS LEU THR GLU SEQRES 8 A 434 SER GLN MET THR ASP LEU ILE ASN TYR ALA LYS ASP LYS SEQRES 9 A 434 GLY ILE GLY LEU ILE PRO THR VAL ASN SER PRO GLY HIS SEQRES 10 A 434 MET ASP ALA ILE LEU ASN ALA MET LYS GLU LEU GLY ILE SEQRES 11 A 434 GLN ASN PRO ASN PHE SER TYR PHE GLY LYS LYS SER ALA SEQRES 12 A 434 ARG THR VAL ASP LEU ASP ASN GLU GLN ALA VAL ALA PHE SEQRES 13 A 434 THR LYS ALA LEU ILE ASP LYS TYR ALA ALA TYR PHE ALA SEQRES 14 A 434 LYS LYS THR GLU ILE PHE ASN ILE GLY LEU ASP GLU TYR SEQRES 15 A 434 ALA ASN ASP ALA THR ASP ALA LYS GLY TRP SER VAL LEU SEQRES 16 A 434 GLN ALA ASP LYS TYR TYR PRO ASN GLU GLY TYR PRO VAL SEQRES 17 A 434 LYS GLY TYR GLU LYS PHE ILE ALA TYR ALA ASN ASP LEU SEQRES 18 A 434 ALA ARG ILE VAL LYS SER HIS GLY LEU LYS PRO MET ALA SEQRES 19 A 434 PHE ASN ASP GLY ILE TYR TYR ASN SER ASP THR SER PHE SEQRES 20 A 434 GLY SER PHE ASP LYS ASP ILE ILE VAL SER MET TRP THR SEQRES 21 A 434 GLY GLY TRP GLY GLY TYR ASP VAL ALA SER SER LYS LEU SEQRES 22 A 434 LEU ALA GLU LYS GLY HIS GLN ILE LEU ASN THR ASN ASP SEQRES 23 A 434 ALA TRP TYR TYR VAL LEU GLY ARG ASN ALA ASP GLY GLN SEQRES 24 A 434 GLY TRP TYR ASN LEU ASP GLN GLY LEU ASN GLY ILE LYS SEQRES 25 A 434 ASN THR PRO ILE THR SER VAL PRO LYS THR GLU GLY ALA SEQRES 26 A 434 ASP ILE PRO ILE ILE GLY GLY MET VAL ALA ALA TRP ALA SEQRES 27 A 434 ASP THR PRO SER ALA ARG TYR SER PRO SER ARG LEU PHE SEQRES 28 A 434 LYS LEU MET ARG HIS PHE ALA ASN ALA ASN ALA GLU TYR SEQRES 29 A 434 PHE ALA ALA ASP TYR GLU SER ALA GLU GLN ALA LEU ASN SEQRES 30 A 434 GLU VAL PRO LYS ASP LEU ASN ARG TYR THR ALA GLU SER SEQRES 31 A 434 VAL THR ALA VAL LYS GLU ALA GLU LYS ALA ILE ARG SER SEQRES 32 A 434 LEU ASP SER ASN LEU SER ARG ALA GLN GLN ASP THR ILE SEQRES 33 A 434 ASP GLN ALA ILE ALA LYS LEU GLN GLU THR VAL ASN ASN SEQRES 34 A 434 LEU THR LEU THR PRO HET MG A1615 1 HET MG A1616 1 HET EDO A1617 4 HET EDO A1618 4 HET EDO A1619 4 HET EDO A1620 4 HET EDO A1621 4 HET EDO A1622 4 HET EDO A1623 4 HET EDO A1624 4 HET EDO A1625 4 HET EDO A1626 4 HET ETE A1627 14 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ETE 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG 2(MG 2+) FORMUL 3 EDO 10(C2 H6 O2) FORMUL 4 ETE C9 H20 O5 FORMUL 5 HOH *628(H2 O) HELIX 1 1 SER A 200 GLY A 215 1 16 HELIX 2 2 ALA A 245 TYR A 261 1 17 HELIX 3 3 GLU A 271 LYS A 284 1 14 HELIX 4 4 MET A 298 GLY A 309 1 12 HELIX 5 5 ASN A 330 ALA A 349 1 20 HELIX 6 6 LYS A 370 TYR A 381 1 12 HELIX 7 7 LYS A 389 HIS A 408 1 20 HELIX 8 8 TYR A 420 ASP A 424 5 5 HELIX 9 9 SER A 450 LYS A 457 1 8 HELIX 10 10 ASN A 465 TYR A 469 5 5 HELIX 11 11 ASN A 483 THR A 494 1 12 HELIX 12 12 SER A 526 ASN A 541 1 16 HELIX 13 13 TYR A 549 GLU A 558 1 10 HELIX 14 14 THR A 567 SER A 583 1 17 HELIX 15 15 GLN A 592 ASN A 609 1 18 SHEET 1 AA19 LYS A 187 ASP A 193 0 SHEET 2 AA19 GLY A 511 TRP A 517 1 O GLY A 512 N ILE A 189 SHEET 3 AA19 TYR A 470 VAL A 471 1 O TYR A 470 N TRP A 517 SHEET 4 AA19 ASP A 218 GLY A 224 0 SHEET 5 AA19 GLY A 287 SER A 294 0 SHEET 6 AA19 ILE A 354 GLY A 358 0 SHEET 7 AA19 LYS A 411 PHE A 415 0 SHEET 8 AA19 ILE A 435 MET A 438 0 SHEET 9 AA19 ILE A 461 ASN A 463 0 SHEET 10 AA19 LYS A 187 ASP A 193 1 O LYS A 187 N GLY A 512 SHEET 1 AB 2 PHE A 230 MET A 231 0 SHEET 2 AB 2 LEU A 269 THR A 270 1 O LEU A 269 N MET A 231 SHEET 1 AC 2 ILE A 237 ALA A 239 0 SHEET 2 AC 2 LYS A 242 TYR A 244 -1 O LYS A 242 N ALA A 239 SHEET 1 AD 2 ASN A 314 TYR A 317 0 SHEET 2 AD 2 LYS A 320 VAL A 326 -1 O LYS A 320 N TYR A 317 LINK MG MG A1615 O HOH A2623 1555 1555 2.21 CISPEP 1 SER A 294 PRO A 295 0 -1.99 SITE 1 AC1 4 THR A 520 PRO A 521 SER A 522 HOH A2623 SITE 1 AC2 5 LYS A 197 ASN A 265 TYR A 525 EDO A1625 SITE 2 AC2 5 HOH A2037 SITE 1 AC3 8 ASP A 360 GLU A 361 PHE A 415 TRP A 439 SITE 2 AC3 8 TYR A 469 TRP A 517 HOH A2189 HOH A2296 SITE 1 AC4 5 SER A 373 GLN A 376 ALA A 377 HOH A2318 SITE 2 AC4 5 HOH A2625 SITE 1 AC5 3 ALA A 339 ASP A 342 HOH A2076 SITE 1 AC6 2 TYR A 260 HOH A2129 SITE 1 AC7 5 GLY A 266 ASN A 267 HIS A 268 HOH A2109 SITE 2 AC7 5 HOH A2140 SITE 1 AC8 4 ARG A 474 GLN A 479 ASN A 608 HOH A2611 SITE 1 AC9 4 ASN A 383 GLY A 385 HOH A2325 HOH A2341 SITE 1 BC1 8 GLU A 254 LYS A 255 ASN A 258 GLY A 442 SITE 2 BC1 8 TRP A 443 GLY A 444 HOH A2099 HOH A2111 SITE 1 BC2 4 ASN A 265 ARG A 524 MG A1616 HOH A2493 SITE 1 BC3 4 ARG A 474 ASP A 519 HOH A2104 HOH A2434 SITE 1 BC4 8 TYR A 317 PHE A 318 SER A 373 TYR A 381 SITE 2 BC4 8 TYR A 386 HOH A2342 HOH A2343 HOH A2628 CRYST1 78.286 108.999 112.433 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012774 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008894 0.00000