HEADER OXIDOREDUCTASE 02-JUN-11 2YLJ TITLE HORSE RADISH PEROXIDASE, MUTANT S167Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIDASE C1A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 31-336; COMPND 5 SYNONYM: HORSERADISH PEROXIDASE; COMPND 6 EC: 1.11.1.7; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: COVALENT LINKAGE BETWEEN HEME AND TYR 167 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARMORACIA RUSTICANA; SOURCE 3 ORGANISM_COMMON: HORSERADISH; SOURCE 4 ORGANISM_TAXID: 3704; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.ROE,F.S.AL-FARTUSIE,A.T.SMITH REVDAT 2 20-DEC-23 2YLJ 1 REMARK LINK REVDAT 1 13-JUN-12 2YLJ 0 JRNL AUTH F.S.AL-FARTUSIE JRNL TITL ENGINEERING AND CHARACTERISATION OF NOVEL PROTEIN COVALENT JRNL TITL 2 LINKAGES IN HORSERADISH PEROXIDASE (HRP): EFFECT ON JRNL TITL 3 STRUCTURE AND FUNCTION. JRNL EDIT U.SUSSEX JRNL REF PH D THESIS JRNL PUBL NULL: INSTITUTE (THESIS) REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 36246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3515 - 4.8036 0.99 2869 121 0.1620 0.1649 REMARK 3 2 4.8036 - 3.8134 0.98 2847 124 0.1182 0.1314 REMARK 3 3 3.8134 - 3.3316 0.97 2802 138 0.1368 0.1484 REMARK 3 4 3.3316 - 3.0270 0.97 2794 142 0.1347 0.1629 REMARK 3 5 3.0270 - 2.8101 0.99 2872 126 0.1352 0.1998 REMARK 3 6 2.8101 - 2.6445 0.99 2850 169 0.1374 0.1834 REMARK 3 7 2.6445 - 2.5120 0.99 2833 136 0.1385 0.1860 REMARK 3 8 2.5120 - 2.4027 1.00 2891 143 0.1377 0.1738 REMARK 3 9 2.4027 - 2.3102 0.99 2862 144 0.1403 0.2170 REMARK 3 10 2.3102 - 2.2305 0.99 2793 171 0.1405 0.1915 REMARK 3 11 2.2305 - 2.1607 0.99 2880 141 0.1436 0.2053 REMARK 3 12 2.1607 - 2.0990 0.99 2838 176 0.1422 0.2009 REMARK 3 13 2.0990 - 2.0437 0.99 2806 177 0.1499 0.1550 REMARK 3 14 2.0437 - 1.9939 0.99 2797 177 0.1532 0.1958 REMARK 3 15 1.9939 - 1.9485 0.99 2827 164 0.1665 0.2265 REMARK 3 16 1.9485 - 1.9071 0.98 2811 158 0.1745 0.2252 REMARK 3 17 1.9071 - 1.8689 0.98 2782 151 0.1876 0.2184 REMARK 3 18 1.8689 - 1.8337 0.97 2765 168 0.2009 0.2389 REMARK 3 19 1.8337 - 1.8009 0.95 2792 143 0.2206 0.2560 REMARK 3 20 1.8009 - 1.7704 0.83 2375 126 0.2446 0.2664 REMARK 3 21 1.7704 - 1.7418 0.76 2189 108 0.2647 0.3285 REMARK 3 22 1.7418 - 1.7150 0.70 2004 96 0.2608 0.3068 REMARK 3 23 1.7150 - 1.6898 0.64 1840 87 0.2956 0.3348 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.89 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 57.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.29620 REMARK 3 B22 (A**2) : 2.96990 REMARK 3 B33 (A**2) : -0.67370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2570 REMARK 3 ANGLE : 1.601 3521 REMARK 3 CHIRALITY : 0.102 389 REMARK 3 PLANARITY : 0.007 466 REMARK 3 DIHEDRAL : 13.260 932 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YLJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36246 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 44.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1HCH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.88500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.68500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.88500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.68500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 197 TO TYR REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 1 CG CD OE1 NE2 REMARK 470 ASN A 212 CG OD1 ND2 REMARK 470 LYS A 232 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ACT A 1309 O HOH A 2090 1.68 REMARK 500 ND2 ASN A 24 NH2 ARG A 27 1.98 REMARK 500 O HOH A 2122 O HOH A 2407 2.09 REMARK 500 OD1 ASN A 13 O HOH A 2036 2.10 REMARK 500 NE ARG A 264 O HOH A 2388 2.12 REMARK 500 O HOH A 2023 O HOH A 2024 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 93 CG - CD - NE ANGL. DEV. = -13.1 DEGREES REMARK 500 TYR A 167 CB - CG - CD2 ANGL. DEV. = -10.0 DEGREES REMARK 500 TYR A 167 CB - CG - CD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 264 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 264 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 11 68.69 -159.87 REMARK 500 SER A 73 -62.44 -154.32 REMARK 500 ASN A 186 80.45 -159.58 REMARK 500 THR A 288 60.24 28.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2015 DISTANCE = 6.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1307 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 O REMARK 620 2 ASP A 43 OD1 78.7 REMARK 620 3 VAL A 46 O 84.1 162.5 REMARK 620 4 GLY A 48 O 69.9 85.6 85.3 REMARK 620 5 ASP A 50 OD1 140.9 81.2 110.8 75.4 REMARK 620 6 SER A 52 OG 141.9 106.4 89.2 146.9 76.2 REMARK 620 7 HOH A2101 O 73.0 87.2 91.0 143.0 139.0 69.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 350 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HEM A 350 NA 101.3 REMARK 620 3 HEM A 350 NB 97.5 90.4 REMARK 620 4 HEM A 350 NC 93.3 165.3 89.8 REMARK 620 5 HEM A 350 ND 101.2 84.7 161.2 90.4 REMARK 620 6 HEM A 350 NB 97.5 90.4 0.0 89.8 161.2 REMARK 620 7 HEM A 350 NB 94.1 91.3 3.4 89.8 164.6 3.4 REMARK 620 8 HEM A 350 NC 93.3 165.3 89.8 0.0 90.4 89.8 89.8 REMARK 620 9 HEM A 350 NC 95.6 163.1 87.7 2.9 91.7 87.7 87.8 2.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1308 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 171 O REMARK 620 2 THR A 171 OG1 71.4 REMARK 620 3 ASP A 222 OD2 89.1 89.5 REMARK 620 4 THR A 225 O 81.1 152.4 87.2 REMARK 620 5 THR A 225 OG1 150.4 137.2 84.8 69.7 REMARK 620 6 ILE A 228 O 86.7 88.3 175.6 93.0 99.4 REMARK 620 7 ASP A 230 OD1 137.4 67.5 101.5 139.9 72.2 81.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H5G RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 (33-44% DOSE) REMARK 900 RELATED ID: 2ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE COMPLEX WITH BENZHYDROXAMIC ACID REMARK 900 RELATED ID: 1H5D RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 (0-11% DOSE) REMARK 900 RELATED ID: 1HCH RELATED DB: PDB REMARK 900 HORSERADISH PEROXIDASE COMPOUND I REMARK 900 RELATED ID: 4ATJ RELATED DB: PDB REMARK 900 DISTAL HEME POCKET MUTANT (H42E) OF RECOMBINANT REMARK 900 HORSERADISHPEROXIDASE IN COMPLEX WITH BENZHYDROXAMIC ACID REMARK 900 RELATED ID: 1ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A REMARK 900 RELATED ID: 1H5M RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 (0-100% DOSE) REMARK 900 RELATED ID: 1H5F RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 (22-33% DOSE) REMARK 900 RELATED ID: 1W4Y RELATED DB: PDB REMARK 900 FERROUS HORSERADISH PEROXIDASE C1A IN COMPLEX WITH CARBON MONOXIDE REMARK 900 RELATED ID: 1GX2 RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE PHE179SER COMPLEX WITH REMARK 900 BENZHYDROXAMIC ACID REMARK 900 RELATED ID: 1H58 RELATED DB: PDB REMARK 900 STRUCTURE OF FERROUS HORSERADISH PEROXIDASE C1A REMARK 900 RELATED ID: 1H5K RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 (78-89% DOSE) REMARK 900 RELATED ID: 1W4W RELATED DB: PDB REMARK 900 FERRIC HORSERADISH PEROXIDASE C1A IN COMPLEX WITH FORMATE REMARK 900 RELATED ID: 1GWT RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A PHE221MET REMARK 900 RELATED ID: 1H57 RELATED DB: PDB REMARK 900 STRUCTURE OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 RELATED ID: 1GWU RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A ALA140GLY REMARK 900 RELATED ID: 1H5C RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 (100-200% DOSE) REMARK 900 RELATED ID: 1H5A RELATED DB: PDB REMARK 900 STRUCTURE OF FERRIC HORSERADISH PEROXIDASE C1A IN COMPLEX WITH REMARK 900 ACETATE REMARK 900 RELATED ID: 1H5J RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 (67-78% DOSE) REMARK 900 RELATED ID: 1H5H RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 (44-56% DOSE) REMARK 900 RELATED ID: 1GWO RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A ALA140GLN REMARK 900 RELATED ID: 1H55 RELATED DB: PDB REMARK 900 STRUCTURE OF HORSERADISH PEROXIDASE C1A COMPOUND II REMARK 900 RELATED ID: 1KZM RELATED DB: PDB REMARK 900 DISTAL HEME POCKET MUTANT (R38S/H42E) OF RECOMBINANTHORSERADISH REMARK 900 PEROXIDASE C (HRP C). REMARK 900 RELATED ID: 1GW2 RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A THR171SER IN COMPLEX WITH REMARK 900 FERULIC ACID REMARK 900 RELATED ID: 1H5I RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 (56-67% DOSE) REMARK 900 RELATED ID: 7ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A COMPLEX WITH CYANIDE AND REMARK 900 FERULIC ACID REMARK 900 RELATED ID: 1H5L RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 (89-100% DOSE) REMARK 900 RELATED ID: 3ATJ RELATED DB: PDB REMARK 900 HEME LIGAND MUTANT OF RECOMBINANT HORSERADISH PEROXIDASE IN COMPLEX REMARK 900 WITH BENZHYDROXAMIC ACID REMARK 900 RELATED ID: 1H5E RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 (11-22% DOSE) REMARK 900 RELATED ID: 6ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C COMPLEX WITH FERULIC ACID DBREF 2YLJ A 1 306 UNP P00433 PER1A_ARMRU 31 336 SEQADV 2YLJ TYR A 167 UNP P00433 SER 197 ENGINEERED MUTATION SEQRES 1 A 306 GLN LEU THR PRO THR PHE TYR ASP ASN SER CYS PRO ASN SEQRES 2 A 306 VAL SER ASN ILE VAL ARG ASP THR ILE VAL ASN GLU LEU SEQRES 3 A 306 ARG SER ASP PRO ARG ILE ALA ALA SER ILE LEU ARG LEU SEQRES 4 A 306 HIS PHE HIS ASP CYS PHE VAL ASN GLY CYS ASP ALA SER SEQRES 5 A 306 ILE LEU LEU ASP ASN THR THR SER PHE ARG THR GLU LYS SEQRES 6 A 306 ASP ALA PHE GLY ASN ALA ASN SER ALA ARG GLY PHE PRO SEQRES 7 A 306 VAL ILE ASP ARG MET LYS ALA ALA VAL GLU SER ALA CYS SEQRES 8 A 306 PRO ARG THR VAL SER CYS ALA ASP LEU LEU THR ILE ALA SEQRES 9 A 306 ALA GLN GLN SER VAL THR LEU ALA GLY GLY PRO SER TRP SEQRES 10 A 306 ARG VAL PRO LEU GLY ARG ARG ASP SER LEU GLN ALA PHE SEQRES 11 A 306 LEU ASP LEU ALA ASN ALA ASN LEU PRO ALA PRO PHE PHE SEQRES 12 A 306 THR LEU PRO GLN LEU LYS ASP SER PHE ARG ASN VAL GLY SEQRES 13 A 306 LEU ASN ARG SER SER ASP LEU VAL ALA LEU TYR GLY GLY SEQRES 14 A 306 HIS THR PHE GLY LYS ASN GLN CYS ARG PHE ILE MET ASP SEQRES 15 A 306 ARG LEU TYR ASN PHE SER ASN THR GLY LEU PRO ASP PRO SEQRES 16 A 306 THR LEU ASN THR THR TYR LEU GLN THR LEU ARG GLY LEU SEQRES 17 A 306 CYS PRO LEU ASN GLY ASN LEU SER ALA LEU VAL ASP PHE SEQRES 18 A 306 ASP LEU ARG THR PRO THR ILE PHE ASP ASN LYS TYR TYR SEQRES 19 A 306 VAL ASN LEU GLU GLU GLN LYS GLY LEU ILE GLN SER ASP SEQRES 20 A 306 GLN GLU LEU PHE SER SER PRO ASN ALA THR ASP THR ILE SEQRES 21 A 306 PRO LEU VAL ARG SER PHE ALA ASN SER THR GLN THR PHE SEQRES 22 A 306 PHE ASN ALA PHE VAL GLU ALA MET ASP ARG MET GLY ASN SEQRES 23 A 306 ILE THR PRO LEU THR GLY THR GLN GLY GLN ILE ARG LEU SEQRES 24 A 306 ASN CYS ARG VAL VAL ASN SER HET HEM A 350 85 HET CA A1307 1 HET CA A1308 1 HET ACT A1309 7 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CA 2(CA 2+) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *431(H2 O) HELIX 1 1 ASN A 13 ASP A 29 1 17 HELIX 2 2 ARG A 31 PHE A 45 1 15 HELIX 3 3 ALA A 51 LEU A 55 5 5 HELIX 4 4 THR A 63 ALA A 67 5 5 HELIX 5 5 GLY A 76 CYS A 91 1 16 HELIX 6 6 SER A 96 ALA A 112 1 17 HELIX 7 7 PHE A 130 LEU A 138 1 9 HELIX 8 8 THR A 144 VAL A 155 1 12 HELIX 9 9 ARG A 159 GLY A 168 1 10 HELIX 10 10 GLY A 169 PHE A 172 5 4 HELIX 11 11 ILE A 180 ASN A 186 1 7 HELIX 12 12 PHE A 187 THR A 190 5 4 HELIX 13 13 ASN A 198 CYS A 209 1 12 HELIX 14 14 ASN A 231 GLU A 239 1 9 HELIX 15 15 ILE A 244 SER A 253 1 10 HELIX 16 16 ASP A 258 SER A 269 1 12 HELIX 17 17 SER A 269 GLY A 285 1 17 SHEET 1 AA 2 LYS A 174 GLN A 176 0 SHEET 2 AA 2 LEU A 218 ASP A 220 -1 O VAL A 219 N ASN A 175 SSBOND 1 CYS A 11 CYS A 91 1555 1555 2.04 SSBOND 2 CYS A 44 CYS A 49 1555 1555 2.05 SSBOND 3 CYS A 97 CYS A 301 1555 1555 2.07 SSBOND 4 CYS A 177 CYS A 209 1555 1555 2.04 LINK OH BTYR A 167 CABBHEM A 350 1555 1555 1.43 LINK CE1BTYR A 167 CBBBHEM A 350 1555 1555 1.52 LINK O ASP A 43 CA CA A1307 1555 1555 2.42 LINK OD1 ASP A 43 CA CA A1307 1555 1555 2.40 LINK O VAL A 46 CA CA A1307 1555 1555 2.37 LINK O GLY A 48 CA CA A1307 1555 1555 2.57 LINK OD1 ASP A 50 CA CA A1307 1555 1555 2.39 LINK OG SER A 52 CA CA A1307 1555 1555 2.51 LINK NE2 HIS A 170 FE HEM A 350 1555 1555 2.11 LINK O THR A 171 CA CA A1308 1555 1555 2.38 LINK OG1 THR A 171 CA CA A1308 1555 1555 2.58 LINK OD2 ASP A 222 CA CA A1308 1555 1555 2.29 LINK O THR A 225 CA CA A1308 1555 1555 2.46 LINK OG1 THR A 225 CA CA A1308 1555 1555 2.52 LINK O ILE A 228 CA CA A1308 1555 1555 2.40 LINK OD1 ASP A 230 CA CA A1308 1555 1555 2.56 LINK FE HEM A 350 NB AHEM A 350 1555 1555 2.06 LINK FE HEM A 350 NB BHEM A 350 1555 1555 2.11 LINK FE HEM A 350 NC AHEM A 350 1555 1555 2.09 LINK FE HEM A 350 NC BHEM A 350 1555 1555 2.09 LINK FE HEM A 350 NA AHEM A 350 1555 1555 2.13 LINK FE HEM A 350 NA BHEM A 350 1555 1555 2.07 LINK FE HEM A 350 ND AHEM A 350 1555 1555 2.15 LINK FE HEM A 350 ND BHEM A 350 1555 1555 2.07 LINK CA CA A1307 O HOH A2101 1555 1555 2.48 SITE 1 AC1 28 ARG A 31 ALA A 34 SER A 35 ARG A 38 SITE 2 AC1 28 PHE A 41 SER A 73 ARG A 75 PRO A 139 SITE 3 AC1 28 ALA A 140 PRO A 141 LEU A 148 PHE A 152 SITE 4 AC1 28 LEU A 166 TYR A 167 GLY A 169 HIS A 170 SITE 5 AC1 28 GLY A 173 LYS A 174 ASN A 175 GLN A 176 SITE 6 AC1 28 PHE A 179 PHE A 221 ILE A 244 SER A 246 SITE 7 AC1 28 ACT A1309 HOH A2084 HOH A2090 HOH A2091 SITE 1 AC2 6 ASP A 43 VAL A 46 GLY A 48 ASP A 50 SITE 2 AC2 6 SER A 52 HOH A2101 SITE 1 AC3 5 THR A 171 ASP A 222 THR A 225 ILE A 228 SITE 2 AC3 5 ASP A 230 SITE 1 AC4 9 ARG A 38 PHE A 41 HIS A 42 LEU A 138 SITE 2 AC4 9 PRO A 139 HEM A 350 HOH A2090 HOH A2257 SITE 3 AC4 9 HOH A2431 CRYST1 40.400 67.370 117.770 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024752 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008491 0.00000