HEADER HYDROLASE 03-JUN-11 2YLM TITLE MECHANISM OF USP7 (HAUSP) ACTIVATION BY ITS C-TERMINAL UBIQUITIN-LIKE TITLE 2 DOMAIN (HUBL) AND ALLOSTERIC REGULATION BY GMP-SYNTHETASE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: USP7 UBIQUITIN-LIKE DOMAIN (HUBL), RESIDUES 560-1084; COMPND 5 SYNONYM: UBIQUITIN SPECIFIC PROTEASE 7, DEUBIQUITINATING ENZYME 7, COMPND 6 HERPESVIRUS-ASSOCIATED UBIQUITIN-SPECIFIC PROTEASE, UBIQUITIN COMPND 7 THIOESTERASE 7, UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 7; COMPND 8 EC: 3.4.19.12; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1 KEYWDS HYDROLASE, UBL EXPDTA X-RAY DIFFRACTION AUTHOR A.C.FAESEN,A.PERRAKIS,T.K.SIXMA REVDAT 4 08-MAY-24 2YLM 1 REMARK REVDAT 3 15-JAN-14 2YLM 1 HETATM MASTER REVDAT 2 28-MAR-12 2YLM 1 JRNL REVDAT 1 19-OCT-11 2YLM 0 JRNL AUTH A.C.FAESEN,A.M.G.DIRAC,A.SHANMUGHAM,H.OVAA,A.PERRAKIS, JRNL AUTH 2 T.K.SIXMA JRNL TITL MECHANISM OF USP7/HAUSP ACTIVATION BY ITS C- TERMINAL JRNL TITL 2 UBIQUITIN-LIKE DOMAIN AND ALLOSTERIC REGULATION BY JRNL TITL 3 GMP-SYNTHETASE JRNL REF MOL.CELL V. 44 147 2011 JRNL REFN ISSN 1097-2765 JRNL PMID 21981925 JRNL DOI 10.1016/J.MOLCEL.2011.06.034 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 27939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1401 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2900 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2399 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2765 REMARK 3 BIN R VALUE (WORKING SET) : 0.2365 REMARK 3 BIN FREE R VALUE : 0.3103 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.66 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80040 REMARK 3 B22 (A**2) : -10.78990 REMARK 3 B33 (A**2) : 9.98950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.420 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4440 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5995 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2104 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 138 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 624 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4440 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 555 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4693 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.92 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.33 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 555-792) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9208 53.1023 11.5251 REMARK 3 T TENSOR REMARK 3 T11: -0.0644 T22: -0.1418 REMARK 3 T33: -0.2557 T12: 0.0695 REMARK 3 T13: 0.0284 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.6747 L22: 3.1814 REMARK 3 L33: 1.1054 L12: 2.0541 REMARK 3 L13: 0.6144 L23: 0.3581 REMARK 3 S TENSOR REMARK 3 S11: -0.2160 S12: 0.3511 S13: -0.2059 REMARK 3 S21: -0.4123 S22: 0.2414 S23: 0.0845 REMARK 3 S31: 0.0678 S32: 0.0467 S33: -0.0253 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 793-884) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2239 43.1778 49.7005 REMARK 3 T TENSOR REMARK 3 T11: -0.0450 T22: -0.1372 REMARK 3 T33: -0.2801 T12: 0.1407 REMARK 3 T13: 0.0502 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 7.0236 L22: 6.3724 REMARK 3 L33: 8.1852 L12: -2.3080 REMARK 3 L13: 0.6428 L23: -2.8679 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.0709 S13: 0.2204 REMARK 3 S21: 0.5442 S22: 0.1888 S23: 0.4546 REMARK 3 S31: -0.5442 S32: -0.4340 S33: -0.1431 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 885-1009) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2673 33.2748 86.5620 REMARK 3 T TENSOR REMARK 3 T11: -0.3016 T22: -0.1701 REMARK 3 T33: -0.0782 T12: -0.0405 REMARK 3 T13: 0.0890 T23: -0.0941 REMARK 3 L TENSOR REMARK 3 L11: 4.6239 L22: 2.9000 REMARK 3 L33: 6.5384 L12: -0.2435 REMARK 3 L13: 2.6911 L23: -0.8664 REMARK 3 S TENSOR REMARK 3 S11: -0.1177 S12: -0.3763 S13: 0.2292 REMARK 3 S21: -0.2044 S22: 0.0931 S23: -0.0574 REMARK 3 S31: -0.0533 S32: 0.1344 S33: 0.0246 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 1010-1017) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8729 28.2985 108.4970 REMARK 3 T TENSOR REMARK 3 T11: 0.0066 T22: 0.1571 REMARK 3 T33: -0.1567 T12: -0.0962 REMARK 3 T13: -0.1167 T23: -0.0826 REMARK 3 L TENSOR REMARK 3 L11: 0.1983 L22: 0.0000 REMARK 3 L33: 0.6248 L12: 0.3559 REMARK 3 L13: 0.1852 L23: 0.3188 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.0480 S13: -0.0182 REMARK 3 S21: 0.0465 S22: -0.0008 S23: -0.0027 REMARK 3 S31: 0.0254 S32: -0.0258 S33: -0.0079 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 1018-1044) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1167 24.6979 108.1040 REMARK 3 T TENSOR REMARK 3 T11: -0.0182 T22: 0.1785 REMARK 3 T33: -0.1964 T12: -0.1188 REMARK 3 T13: 0.0939 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.1132 L12: -0.9245 REMARK 3 L13: -2.4571 L23: 2.3714 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: -0.1107 S13: -0.0187 REMARK 3 S21: 0.1400 S22: 0.0161 S23: 0.0882 REMARK 3 S31: 0.0087 S32: -0.0751 S33: -0.0442 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 1045-1051) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7540 11.4158 100.9760 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: -0.0356 REMARK 3 T33: 0.0366 T12: -0.0494 REMARK 3 T13: -0.0048 T23: 0.1185 REMARK 3 L TENSOR REMARK 3 L11: 0.0540 L22: 0.6449 REMARK 3 L33: 0.0000 L12: -0.1144 REMARK 3 L13: -0.1247 L23: -0.7398 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: 0.0150 S13: -0.0133 REMARK 3 S21: 0.0094 S22: 0.0095 S23: 0.0114 REMARK 3 S31: 0.0028 S32: 0.0162 S33: -0.0169 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 1052-1057) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1016 19.2071 114.6160 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.0939 REMARK 3 T33: 0.0070 T12: 0.0655 REMARK 3 T13: 0.0379 T23: 0.0687 REMARK 3 L TENSOR REMARK 3 L11: 0.1213 L22: 0.0000 REMARK 3 L33: 0.1079 L12: -0.0607 REMARK 3 L13: 0.1277 L23: -0.0717 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0114 S13: 0.0006 REMARK 3 S21: -0.0101 S22: 0.0015 S23: -0.0111 REMARK 3 S31: 0.0015 S32: -0.0031 S33: -0.0031 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 1058-1083) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2897 19.7325 97.2886 REMARK 3 T TENSOR REMARK 3 T11: -0.2445 T22: 0.0730 REMARK 3 T33: 0.0020 T12: -0.0855 REMARK 3 T13: -0.0828 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.9691 L22: 1.1359 REMARK 3 L33: 1.1076 L12: -0.5155 REMARK 3 L13: 2.2860 L23: -1.8744 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.0347 S13: -0.1032 REMARK 3 S21: 0.1140 S22: 0.0744 S23: -0.0610 REMARK 3 S31: 0.1539 S32: -0.0692 S33: -0.0772 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : PT COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 4000, 200 MM NACL, 100 MM MES REMARK 280 PH 6.0. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.99000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.31500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.31500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.99000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1084 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 582 -157.51 65.39 REMARK 500 ASN A 654 15.11 59.11 REMARK 500 SER A 672 32.76 -92.63 REMARK 500 ALA A 674 141.01 -33.17 REMARK 500 ASP A 750 33.63 -88.82 REMARK 500 TYR A 911 73.46 -116.75 REMARK 500 LYS A 934 56.34 -157.92 REMARK 500 LYS A 997 -64.38 62.50 REMARK 500 ASP A1029 76.18 54.69 REMARK 500 HIS A1081 -164.55 -177.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1090 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F1Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HAUSP REMARK 900 RELATED ID: 2F1Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TRAF-LIKE DOMAIN OF HAUSP/ USP7 BOUND TO A REMARK 900 MDM2 PEPTIDE REMARK 900 RELATED ID: 1NBF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A UBP-FAMILY DEUBIQUITINATING ENZYMEIN REMARK 900 ISOLATION AND IN COMPLEX WITH UBIQUITIN ALDEHYDE REMARK 900 RELATED ID: 2F1W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TRAF-LIKE DOMAIN OF HAUSP/USP7 REMARK 900 RELATED ID: 2FOJ RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCURE OF THE N-TERMINAL DOMAIN OF HAUSP/ REMARK 900 USP7COMPLEXED WITH P53 PEPTIDE 364-367 REMARK 900 RELATED ID: 1NB8 RELATED DB: PDB REMARK 900 STRUCTURE OF THE CATALYTIC DOMAIN OF USP7 (HAUSP) REMARK 900 RELATED ID: 2FOP RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCURE OF THE N-TERMINAL DOMAIN OF HAUSP/USP7 REMARK 900 COMPLEXED WITH MDM2 PEPTIDE 147-150 REMARK 900 RELATED ID: 2F1X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TRAF-LIKE DOMAIN OF HAUSP/ USP7 BOUND TO A REMARK 900 P53 PEPTIDE REMARK 900 RELATED ID: 2FOO RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCURE OF THE N-TERMINAL DOMAIN OF HAUSP/USP7 REMARK 900 COMPLEXED WITH P53 PEPTIDE 359-362 REMARK 900 RELATED ID: 2XXN RELATED DB: PDB REMARK 900 STRUCTURE OF THE VIRF4-HAUSP TRAF DOMAIN COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL LINKER AFTER CLEAVAGE. DBREF 2YLM A 560 1084 UNP Q93009 UBP7_HUMAN 560 1084 SEQADV 2YLM GLY A 555 UNP Q93009 EXPRESSION TAG SEQADV 2YLM PRO A 556 UNP Q93009 EXPRESSION TAG SEQADV 2YLM LEU A 557 UNP Q93009 EXPRESSION TAG SEQADV 2YLM GLY A 558 UNP Q93009 EXPRESSION TAG SEQADV 2YLM SER A 559 UNP Q93009 EXPRESSION TAG SEQRES 1 A 530 GLY PRO LEU GLY SER GLU ALA HIS LEU TYR MET GLN VAL SEQRES 2 A 530 GLN ILE VAL ALA GLU ASP GLN PHE CYS GLY HIS GLN GLY SEQRES 3 A 530 ASN ASP MET TYR ASP GLU GLU LYS VAL LYS TYR THR VAL SEQRES 4 A 530 PHE LYS VAL LEU LYS ASN SER SER LEU ALA GLU PHE VAL SEQRES 5 A 530 GLN SER LEU SER GLN THR MET GLY PHE PRO GLN ASP GLN SEQRES 6 A 530 ILE ARG LEU TRP PRO MET GLN ALA ARG SER ASN GLY THR SEQRES 7 A 530 LYS ARG PRO ALA MET LEU ASP ASN GLU ALA ASP GLY ASN SEQRES 8 A 530 LYS THR MET ILE GLU LEU SER ASP ASN GLU ASN PRO TRP SEQRES 9 A 530 THR ILE PHE LEU GLU THR VAL ASP PRO GLU LEU ALA ALA SEQRES 10 A 530 SER GLY ALA THR LEU PRO LYS PHE ASP LYS ASP HIS ASP SEQRES 11 A 530 VAL MET LEU PHE LEU LYS MET TYR ASP PRO LYS THR ARG SEQRES 12 A 530 SER LEU ASN TYR CYS GLY HIS ILE TYR THR PRO ILE SER SEQRES 13 A 530 CYS LYS ILE ARG ASP LEU LEU PRO VAL MET CYS ASP ARG SEQRES 14 A 530 ALA GLY PHE ILE GLN ASP THR SER LEU ILE LEU TYR GLU SEQRES 15 A 530 GLU VAL LYS PRO ASN LEU THR GLU ARG ILE GLN ASP TYR SEQRES 16 A 530 ASP VAL SER LEU ASP LYS ALA LEU ASP GLU LEU MET ASP SEQRES 17 A 530 GLY ASP ILE ILE VAL PHE GLN LYS ASP ASP PRO GLU ASN SEQRES 18 A 530 ASP ASN SER GLU LEU PRO THR ALA LYS GLU TYR PHE ARG SEQRES 19 A 530 ASP LEU TYR HIS ARG VAL ASP VAL ILE PHE CYS ASP LYS SEQRES 20 A 530 THR ILE PRO ASN ASP PRO GLY PHE VAL VAL THR LEU SER SEQRES 21 A 530 ASN ARG MET ASN TYR PHE GLN VAL ALA LYS THR VAL ALA SEQRES 22 A 530 GLN ARG LEU ASN THR ASP PRO MET LEU LEU GLN PHE PHE SEQRES 23 A 530 LYS SER GLN GLY TYR ARG ASP GLY PRO GLY ASN PRO LEU SEQRES 24 A 530 ARG HIS ASN TYR GLU GLY THR LEU ARG ASP LEU LEU GLN SEQRES 25 A 530 PHE PHE LYS PRO ARG GLN PRO LYS LYS LEU TYR TYR GLN SEQRES 26 A 530 GLN LEU LYS MET LYS ILE THR ASP PHE GLU ASN ARG ARG SEQRES 27 A 530 SER PHE LYS CYS ILE TRP LEU ASN SER GLN PHE ARG GLU SEQRES 28 A 530 GLU GLU ILE THR LEU TYR PRO ASP LYS HIS GLY CYS VAL SEQRES 29 A 530 ARG ASP LEU LEU GLU GLU CYS LYS LYS ALA VAL GLU LEU SEQRES 30 A 530 GLY GLU LYS ALA SER GLY LYS LEU ARG LEU LEU GLU ILE SEQRES 31 A 530 VAL SER TYR LYS ILE ILE GLY VAL HIS GLN GLU ASP GLU SEQRES 32 A 530 LEU LEU GLU CYS LEU SER PRO ALA THR SER ARG THR PHE SEQRES 33 A 530 ARG ILE GLU GLU ILE PRO LEU ASP GLN VAL ASP ILE ASP SEQRES 34 A 530 LYS GLU ASN GLU MET LEU VAL THR VAL ALA HIS PHE HIS SEQRES 35 A 530 LYS GLU VAL PHE GLY THR PHE GLY ILE PRO PHE LEU LEU SEQRES 36 A 530 ARG ILE HIS GLN GLY GLU HIS PHE ARG GLU VAL MET LYS SEQRES 37 A 530 ARG ILE GLN SER LEU LEU ASP ILE GLN GLU LYS GLU PHE SEQRES 38 A 530 GLU LYS PHE LYS PHE ALA ILE VAL MET MET GLY ARG HIS SEQRES 39 A 530 GLN TYR ILE ASN GLU ASP GLU TYR GLU VAL ASN LEU LYS SEQRES 40 A 530 ASP PHE GLU PRO GLN PRO GLY ASN MET SER HIS PRO ARG SEQRES 41 A 530 PRO TRP LEU GLY LEU ASP HIS PHE ASN LYS HET CL A1090 1 HETNAM CL CHLORIDE ION FORMUL 2 CL CL 1- FORMUL 3 HOH *128(H2 O) HELIX 1 1 GLU A 560 HIS A 562 5 3 HELIX 2 2 ASP A 573 CYS A 576 5 4 HELIX 3 3 SER A 601 GLY A 614 1 14 HELIX 4 4 PRO A 616 ASP A 618 5 3 HELIX 5 5 ASP A 639 GLY A 644 1 6 HELIX 6 6 THR A 647 ASP A 653 1 7 HELIX 7 7 ASP A 666 ALA A 671 1 6 HELIX 8 8 ILE A 713 ASP A 715 5 3 HELIX 9 9 LEU A 716 GLY A 725 1 10 HELIX 10 10 SER A 752 LEU A 757 1 6 HELIX 11 11 ASP A 772 SER A 778 5 7 HELIX 12 12 THR A 782 HIS A 792 1 11 HELIX 13 13 ASN A 818 ASN A 831 1 14 HELIX 14 14 ASP A 833 MET A 835 5 3 HELIX 15 15 THR A 860 LEU A 865 1 6 HELIX 16 16 LYS A 884 ASN A 890 1 7 HELIX 17 17 CYS A 917 LYS A 927 1 11 HELIX 18 18 LEU A 959 LEU A 962 5 4 HELIX 19 19 PRO A 976 VAL A 980 5 5 HELIX 20 20 HIS A 1016 ASP A 1029 1 14 HELIX 21 21 GLN A 1031 GLU A 1036 1 6 HELIX 22 22 ASN A 1059 PHE A 1063 5 5 SHEET 1 AA 5 THR A 592 LEU A 597 0 SHEET 2 AA 5 TYR A 564 ALA A 571 -1 O MET A 565 N VAL A 596 SHEET 3 AA 5 TRP A 658 THR A 664 1 O TRP A 658 N GLN A 568 SHEET 4 AA 5 ILE A 620 ALA A 627 -1 O ARG A 621 N GLU A 663 SHEET 5 AA 5 LYS A 633 PRO A 635 -1 O ARG A 634 N GLN A 626 SHEET 1 AB 5 SER A 698 PRO A 708 0 SHEET 2 AB 5 ASP A 684 ASP A 693 -1 O VAL A 685 N THR A 707 SHEET 3 AB 5 ASP A 764 LYS A 770 1 O ASP A 764 N PHE A 688 SHEET 4 AB 5 LEU A 732 LYS A 739 -1 O ILE A 733 N GLN A 769 SHEET 5 AB 5 LEU A 742 ARG A 745 -1 O LEU A 742 N VAL A 738 SHEET 1 AC 4 PHE A 809 SER A 814 0 SHEET 2 AC 4 ARG A 793 ASP A 800 -1 O VAL A 794 N LEU A 813 SHEET 3 AC 4 LYS A 875 GLN A 880 1 O LEU A 876 N CYS A 799 SHEET 4 AC 4 LEU A 837 PHE A 840 -1 O GLN A 838 N GLN A 879 SHEET 1 AD 5 GLU A 905 LEU A 910 0 SHEET 2 AD 5 PHE A 894 LEU A 899 -1 O PHE A 894 N LEU A 910 SHEET 3 AD 5 THR A 969 GLU A 974 1 O PHE A 970 N ILE A 897 SHEET 4 AD 5 LEU A 939 VAL A 945 -1 O ARG A 940 N GLU A 973 SHEET 5 AD 5 LYS A 948 HIS A 953 -1 O LYS A 948 N VAL A 945 SHEET 1 AE 5 THR A1002 HIS A1012 0 SHEET 2 AE 5 GLU A 987 PHE A 995 -1 O MET A 988 N ILE A1011 SHEET 3 AE 5 TRP A1076 ASP A1080 1 O LEU A1077 N ALA A 993 SHEET 4 AE 5 LYS A1039 MET A1044 -1 O LYS A1039 N ASP A1080 SHEET 5 AE 5 ARG A1047 TYR A1050 -1 O ARG A1047 N MET A1044 CISPEP 1 ASN A 656 PRO A 657 0 4.05 SITE 1 AC1 3 HIS A 792 ASN A 815 ARG A 862 CRYST1 79.980 82.310 150.630 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012503 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006639 0.00000