HEADER TRANSPORT PROTEIN 03-JUN-11 2YLN TITLE CRYSTAL STRUCTURE OF THE L-CYSTINE SOLUTE RECEPTOR OF NEISSERIA TITLE 2 GONORRHOEAE IN THE CLOSED CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN, COMPND 3 AMINO ACID; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 17-275; COMPND 6 SYNONYM: SOLUTE RECEPTOR FOR L-CYSTINE; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 STRAIN: FA1090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET19B KEYWDS TRANSPORT PROTEIN, TRANSPORTER, ABC-TRANSPORTER, SOLUTE-BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.BULUT,S.MONIOT,F.SCHEFFEL,S.GATHMANN,A.LICHT,W.SAENGER,E.SCHNEIDER REVDAT 3 20-DEC-23 2YLN 1 REMARK REVDAT 2 25-JAN-12 2YLN 1 JRNL REVDAT 1 14-DEC-11 2YLN 0 JRNL AUTH H.BULUT,S.MONIOT,A.LICHT,F.SCHEFFEL,S.GATHMANN,W.SAENGER, JRNL AUTH 2 E.SCHNEIDER JRNL TITL CRYSTAL STRUCTURES OF TWO SOLUTE RECEPTORS FOR L-CYSTINE AND JRNL TITL 2 L-CYSTEINE, RESPECTIVELY, OF THE HUMAN PATHOGEN NEISSERIA JRNL TITL 3 GONORRHOEAE. JRNL REF J.MOL.BIOL. V. 415 560 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22138345 JRNL DOI 10.1016/J.JMB.2011.11.030 REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 71314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.109 REMARK 3 FREE R VALUE : 0.142 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4763 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 251 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.031 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.964 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2377 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1631 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3244 ; 2.137 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4072 ; 1.067 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 7.185 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;37.990 ;26.774 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;12.279 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;25.197 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2796 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 427 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1509 ; 2.185 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 606 ; 0.772 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2471 ; 3.031 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 868 ; 5.048 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 773 ; 7.305 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4008 ; 2.078 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2YLN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75069 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.120 REMARK 200 RESOLUTION RANGE LOW (A) : 30.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZSF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 9.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 100 MM NA REMARK 280 -CITRATE PH 4.0. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 19 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 HIS A 8 REMARK 465 ILE A 9 REMARK 465 ASP A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 LYS A 14 REMARK 465 HIS A 15 REMARK 465 MET A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 GLU A 23 REMARK 465 GLY A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 465 ALA A 33 REMARK 465 GLN A 34 REMARK 465 SER A 35 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 89 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 89 CE LYS A 89 NZ 0.671 REMARK 500 GLU A 94 CD GLU A 94 OE1 -0.067 REMARK 500 GLU A 122 CG GLU A 122 CD 0.093 REMARK 500 TRP A 135 CG TRP A 135 CD1 0.139 REMARK 500 TRP A 135 CD1 TRP A 135 NE1 -0.124 REMARK 500 GLU A 253 CG GLU A 253 CD -0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LYS A 89 CD - CE - NZ ANGL. DEV. = -27.7 DEGREES REMARK 500 LYS A 105 CD - CE - NZ ANGL. DEV. = -20.2 DEGREES REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 LYS A 255 CD - CE - NZ ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 48 56.59 71.17 REMARK 500 THR A 63 102.13 -161.06 REMARK 500 ASN A 114 49.59 -164.86 REMARK 500 LYS A 149 27.28 -148.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYS A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYS A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1282 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1283 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZSF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE L-CYSTINE SOLUTE RECEPTOR OF NEISSERIA REMARK 900 GONORRHOEAE IN THE UNLIGANDED OPEN CONFORMATION REMARK 900 RELATED ID: 2YJP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SOLUTE RECEPTORS FOR L- CYSTEINE OF REMARK 900 NEISSERIA GONORRHOEAE REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL HIS-TAG CONSTRUCT WITH ENTEROKINASE CLEAVAGE REMARK 999 SITE AND C19G MUTATION. DBREF 2YLN A 17 275 UNP Q5F9M1 Q5F9M1_NEIG1 17 275 SEQADV 2YLN MET A -7 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN GLY A -6 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A -5 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A -4 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A -3 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A -2 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A -1 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A 0 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A 1 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A 2 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A 3 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A 4 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN SER A 5 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN SER A 6 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN GLY A 7 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A 8 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN ILE A 9 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN ASP A 10 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN ASP A 11 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN ASP A 12 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN ASP A 13 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN LYS A 14 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN HIS A 15 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN MET A 16 UNP Q5F9M1 EXPRESSION TAG SEQADV 2YLN ALA A 19 UNP CYS 19 ENGINEERED MUTATION SEQRES 1 A 283 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 283 SER GLY HIS ILE ASP ASP ASP ASP LYS HIS MET ALA ALA SEQRES 3 A 283 ALA GLY GLY SER GLU GLY GLY SER GLY ALA SER SER ALA SEQRES 4 A 283 PRO ALA GLN SER ALA ILE SER GLY SER LEU ILE GLU ARG SEQRES 5 A 283 ILE ASN ASN LYS GLY THR VAL THR VAL GLY THR GLU GLY SEQRES 6 A 283 THR TYR ALA PRO PHE THR TYR HIS ASP LYS ASP GLY LYS SEQRES 7 A 283 LEU THR GLY TYR ASP VAL GLU VAL THR ARG ALA VAL ALA SEQRES 8 A 283 GLU LYS LEU GLY VAL LYS VAL GLU PHE LYS GLU THR GLN SEQRES 9 A 283 TRP ASP SER MET MET ALA GLY LEU LYS ALA GLY ARG PHE SEQRES 10 A 283 ASP VAL VAL ALA ASN GLN VAL GLY LEU THR SER PRO GLU SEQRES 11 A 283 ARG GLN ALA THR PHE ASP LYS SER GLU PRO TYR SER TRP SEQRES 12 A 283 SER GLY ALA VAL LEU VAL ALA HIS ASN ASP SER ASN ILE SEQRES 13 A 283 LYS SER ILE ALA ASP ILE LYS GLY VAL LYS THR ALA GLN SEQRES 14 A 283 SER LEU THR SER ASN TYR GLY GLU LYS ALA LYS ALA ALA SEQRES 15 A 283 GLY ALA GLN LEU VAL PRO VAL ASP GLY LEU ALA GLN SER SEQRES 16 A 283 LEU THR LEU ILE GLU GLN LYS ARG ALA ASP ALA THR LEU SEQRES 17 A 283 ASN ASP GLU LEU ALA VAL LEU ASP TYR LEU LYS LYS ASN SEQRES 18 A 283 PRO ASN ALA GLY VAL LYS ILE VAL TRP SER ALA PRO ALA SEQRES 19 A 283 ASP GLU LYS VAL GLY SER GLY LEU ILE VAL ASN LYS GLY SEQRES 20 A 283 ASN ASP GLU ALA VAL ALA LYS PHE SER THR ALA ILE ASN SEQRES 21 A 283 GLU LEU LYS ALA ASP GLY THR LEU LYS LYS LEU GLY GLU SEQRES 22 A 283 GLN PHE PHE GLY LYS ASP ILE SER VAL GLN HET CYS A 500 7 HET CYS A 600 14 HET SO4 A1276 5 HET SO4 A1277 5 HET GOL A1278 6 HET GOL A1279 6 HET GOL A1280 12 HET GOL A1281 6 HET GOL A1282 6 HET GOL A1283 6 HETNAM CYS CYSTEINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CYS 2(C3 H7 N O2 S) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 GOL 6(C3 H8 O3) FORMUL 12 HOH *275(H2 O) HELIX 1 1 SER A 40 LYS A 48 1 9 HELIX 2 2 GLY A 73 GLY A 87 1 15 HELIX 3 3 GLN A 96 ASP A 98 5 3 HELIX 4 4 SER A 99 ALA A 106 1 8 HELIX 5 5 SER A 120 THR A 126 1 7 HELIX 6 6 SER A 150 ILE A 154 5 5 HELIX 7 7 SER A 165 ALA A 174 1 10 HELIX 8 8 GLY A 183 GLN A 193 1 11 HELIX 9 9 GLU A 203 ASN A 213 1 11 HELIX 10 10 PRO A 225 LYS A 229 5 5 HELIX 11 11 ASN A 240 ASP A 257 1 18 HELIX 12 12 GLY A 258 GLY A 269 1 12 SHEET 1 AA 5 LYS A 89 GLU A 94 0 SHEET 2 AA 5 THR A 50 THR A 55 1 O VAL A 51 N GLU A 91 SHEET 3 AA 5 VAL A 111 VAL A 112 1 O VAL A 111 N GLY A 54 SHEET 4 AA 5 ILE A 235 ASN A 237 -1 O ILE A 235 N VAL A 112 SHEET 5 AA 5 PHE A 127 LYS A 129 -1 O ASP A 128 N VAL A 236 SHEET 1 AB 3 THR A 58 TYR A 59 0 SHEET 2 AB 3 THR A 63 HIS A 65 -1 O THR A 63 N TYR A 59 SHEET 3 AB 3 LEU A 71 THR A 72 -1 O THR A 72 N TYR A 64 SHEET 1 AC 2 SER A 134 SER A 136 0 SHEET 2 AC 2 VAL A 230 SER A 232 -1 O VAL A 230 N SER A 136 SHEET 1 AD 3 ALA A 198 ASP A 202 0 SHEET 2 AD 3 ALA A 138 HIS A 143 -1 O VAL A 139 N ASN A 201 SHEET 3 AD 3 VAL A 218 SER A 223 -1 O LYS A 219 N ALA A 142 SHEET 1 AE 2 LYS A 158 GLN A 161 0 SHEET 2 AE 2 GLN A 177 PRO A 180 1 O GLN A 177 N THR A 159 SSBOND 1 CYS A 500 CYS A 600 1555 1555 2.10 CISPEP 1 ALA A 60 PRO A 61 0 2.48 SITE 1 AC1 11 TYR A 59 TRP A 97 ASN A 114 GLN A 115 SITE 2 AC1 11 VAL A 116 ARG A 123 SER A 165 ASN A 166 SITE 3 AC1 11 CYS A 600 HOH A2029 HOH A2106 SITE 1 AC2 12 GLU A 56 TYR A 59 TRP A 97 SER A 162 SITE 2 AC2 12 SER A 165 TYR A 167 GLY A 183 LEU A 184 SITE 3 AC2 12 ASN A 201 CYS A 500 HOH A2026 HOH A2169 SITE 1 AC3 8 LYS A 93 ARG A 108 GLU A 253 GOL A1278 SITE 2 AC3 8 HOH A2071 HOH A2159 HOH A2263 HOH A2291 SITE 1 AC4 7 ALA A 185 HOH A2193 HOH A2221 HOH A2222 SITE 2 AC4 7 HOH A2292 HOH A2293 HOH A2294 SITE 1 AC5 9 GLY A 103 ARG A 108 ASN A 252 GLU A 253 SITE 2 AC5 9 SO4 A1276 HOH A2089 HOH A2291 HOH A2295 SITE 3 AC5 9 HOH A2296 SITE 1 AC6 11 GLY A 137 ALA A 138 GLU A 203 SER A 223 SITE 2 AC6 11 ALA A 224 ALA A 226 LYS A 229 HOH A2141 SITE 3 AC6 11 HOH A2203 HOH A2233 HOH A2234 SITE 1 AC7 7 ASP A 182 GLN A 186 LYS A 261 GLU A 265 SITE 2 AC7 7 HOH A2188 HOH A2292 HOH A2293 SITE 1 AC8 10 SER A 38 THR A 52 GLY A 107 PHE A 109 SITE 2 AC8 10 ASP A 110 SER A 150 ALA A 152 HOH A2007 SITE 3 AC8 10 HOH A2016 HOH A2097 SITE 1 AC9 2 GLN A 124 HOH A2115 SITE 1 BC1 6 LYS A 129 PRO A 132 TRP A 135 VAL A 230 SITE 2 BC1 6 GLY A 231 HOH A2298 CRYST1 35.730 63.430 44.650 90.00 96.89 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027988 0.000000 0.003382 0.00000 SCALE2 0.000000 0.015765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022559 0.00000