HEADER OXIDOREDUCTASE 06-JUN-11 2YLS TITLE SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION TITLE 2 AND INTERMEDIATE STABILIZATION: REDUCED ENZYME BOUND TO NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLACETONE MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAMO, BAEYER-VILLIGER MONOOXYGENASE, BVMO; COMPND 5 EC: 1.14.13.92; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 3 ORGANISM_TAXID: 2021; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: TOP10 KEYWDS OXIDOREDUCTASE, OXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ORRU,H.M.DUDEK,C.MARTINOLI,D.E.TORRES PAZMINO,A.ROYANT,M.WEIK, AUTHOR 2 M.W.FRAAIJE,A.MATTEVI REVDAT 5 20-DEC-23 2YLS 1 REMARK REVDAT 4 25-SEP-19 2YLS 1 REMARK REVDAT 3 03-APR-19 2YLS 1 REMARK REVDAT 2 24-AUG-11 2YLS 1 JRNL REMARK VERSN REVDAT 1 22-JUN-11 2YLS 0 JRNL AUTH R.ORRU,H.M.DUDEK,C.MARTINOLI,D.E.TORRES PAZMINO,A.ROYANT, JRNL AUTH 2 M.WEIK,M.W.FRAAIJE,A.MATTEVI JRNL TITL SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN JRNL TITL 2 ACTIVATION AND INTERMEDIATE STABILIZATION. JRNL REF J.BIOL.CHEM. V. 286 29284 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21697090 JRNL DOI 10.1074/JBC.M111.255075 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 32332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2304 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4230 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.39000 REMARK 3 B22 (A**2) : 1.39000 REMARK 3 B33 (A**2) : -2.08000 REMARK 3 B12 (A**2) : 0.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.307 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4453 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6082 ; 1.881 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 531 ; 6.577 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 217 ;33.783 ;23.180 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ;16.261 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;19.619 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 647 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3458 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2646 ; 0.953 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4264 ; 1.735 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1807 ; 3.111 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1818 ; 4.798 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES, REFINED INDIVIDUALLY REMARK 4 REMARK 4 2YLS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YLR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BY VAPOR-DIFFUSION AT 4 DEGREES C REMARK 280 USING 1-3 MICROL OF PROTEIN SOLUTIONS (18 MG/ML IN 0.5 MICROM REMARK 280 FAD AND 4 MM NADP, 50 MM TRIS/HCL PH 7.5) MIXED WITH EQUAL REMARK 280 VOLUMES OF RESERVOIR CONTAINING 40% W/V PEG4000, 100 MM MES/HCL REMARK 280 PH 6.5, AND 100 MM NACL., VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.22000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.61000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.61000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 ARG A 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 160 CG OD1 ND2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 346 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 158 CA - CB - CG ANGL. DEV. = 22.6 DEGREES REMARK 500 GLY A 163 C - N - CA ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 246 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 246 NE - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 297 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 392 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 525 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 12 118.56 -168.32 REMARK 500 ARG A 64 138.26 -170.06 REMARK 500 ALA A 149 41.84 -102.71 REMARK 500 ASN A 176 57.06 -149.73 REMARK 500 ARG A 217 -105.84 -104.43 REMARK 500 ASN A 251 50.03 -94.58 REMARK 500 ALA A 386 54.30 -98.59 REMARK 500 LEU A 392 -41.85 76.43 REMARK 500 SER A 441 -131.51 54.44 REMARK 500 ASN A 445 113.90 -33.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 163 LEU A 164 -143.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W4X RELATED DB: PDB REMARK 900 PHENYLACETONE MONOOXYGENASE, A BAEYER-VILLIGER MONOOXYGENASE REMARK 900 RELATED ID: 2YLX RELATED DB: PDB REMARK 900 SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION REMARK 900 AND INTERMEDIATE STABILIZATION: ASP66ALA MUTANT IN COMPLEX WITH REMARK 900 NADP AND MES REMARK 900 RELATED ID: 2YLZ RELATED DB: PDB REMARK 900 SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION REMARK 900 AND INTERMEDIATE STABILIZATION: MET446GLY MUTANT REMARK 900 RELATED ID: 2YLT RELATED DB: PDB REMARK 900 SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION REMARK 900 AND INTERMEDIATE STABILIZATION: COMPLEX WITH NADP AND MES REMARK 900 RELATED ID: 2YM1 RELATED DB: PDB REMARK 900 SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION REMARK 900 AND INTERMEDIATE STABILIZATION: ARG337LYS MUTANT IN COMPLEX WITH REMARK 900 NADP REMARK 900 RELATED ID: 2YM2 RELATED DB: PDB REMARK 900 SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION REMARK 900 AND INTERMEDIATE STABILIZATION: ARG337LYS MUTANT REDUCED STATE WITH REMARK 900 NADP REMARK 900 RELATED ID: 2YLW RELATED DB: PDB REMARK 900 SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION REMARK 900 AND INTERMEDIATE STABILIZATION: ARG337LYS MUTANT IN COMPLEX WITH MES REMARK 900 RELATED ID: 2YLR RELATED DB: PDB REMARK 900 SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION REMARK 900 AND INTERMEDIATE STABILIZATION: COMPLEX WITH NADP DBREF 2YLS A 1 542 UNP Q47PU3 PAMO_THEFY 1 542 SEQRES 1 A 542 MET ALA GLY GLN THR THR VAL ASP SER ARG ARG GLN PRO SEQRES 2 A 542 PRO GLU GLU VAL ASP VAL LEU VAL VAL GLY ALA GLY PHE SEQRES 3 A 542 SER GLY LEU TYR ALA LEU TYR ARG LEU ARG GLU LEU GLY SEQRES 4 A 542 ARG SER VAL HIS VAL ILE GLU THR ALA GLY ASP VAL GLY SEQRES 5 A 542 GLY VAL TRP TYR TRP ASN ARG TYR PRO GLY ALA ARG CYS SEQRES 6 A 542 ASP ILE GLU SER ILE GLU TYR CYS TYR SER PHE SER GLU SEQRES 7 A 542 GLU VAL LEU GLN GLU TRP ASN TRP THR GLU ARG TYR ALA SEQRES 8 A 542 SER GLN PRO GLU ILE LEU ARG TYR ILE ASN PHE VAL ALA SEQRES 9 A 542 ASP LYS PHE ASP LEU ARG SER GLY ILE THR PHE HIS THR SEQRES 10 A 542 THR VAL THR ALA ALA ALA PHE ASP GLU ALA THR ASN THR SEQRES 11 A 542 TRP THR VAL ASP THR ASN HIS GLY ASP ARG ILE ARG ALA SEQRES 12 A 542 ARG TYR LEU ILE MET ALA SER GLY GLN LEU SER VAL PRO SEQRES 13 A 542 GLN LEU PRO ASN PHE PRO GLY LEU LYS ASP PHE ALA GLY SEQRES 14 A 542 ASN LEU TYR HIS THR GLY ASN TRP PRO HIS GLU PRO VAL SEQRES 15 A 542 ASP PHE SER GLY GLN ARG VAL GLY VAL ILE GLY THR GLY SEQRES 16 A 542 SER SER GLY ILE GLN VAL SER PRO GLN ILE ALA LYS GLN SEQRES 17 A 542 ALA ALA GLU LEU PHE VAL PHE GLN ARG THR PRO HIS PHE SEQRES 18 A 542 ALA VAL PRO ALA ARG ASN ALA PRO LEU ASP PRO GLU PHE SEQRES 19 A 542 LEU ALA ASP LEU LYS LYS ARG TYR ALA GLU PHE ARG GLU SEQRES 20 A 542 GLU SER ARG ASN THR PRO GLY GLY THR HIS ARG TYR GLN SEQRES 21 A 542 GLY PRO LYS SER ALA LEU GLU VAL SER ASP GLU GLU LEU SEQRES 22 A 542 VAL GLU THR LEU GLU ARG TYR TRP GLN GLU GLY GLY PRO SEQRES 23 A 542 ASP ILE LEU ALA ALA TYR ARG ASP ILE LEU ARG ASP ARG SEQRES 24 A 542 ASP ALA ASN GLU ARG VAL ALA GLU PHE ILE ARG ASN LYS SEQRES 25 A 542 ILE ARG ASN THR VAL ARG ASP PRO GLU VAL ALA GLU ARG SEQRES 26 A 542 LEU VAL PRO LYS GLY TYR PRO PHE GLY THR LYS ARG LEU SEQRES 27 A 542 ILE LEU GLU ILE ASP TYR TYR GLU MET PHE ASN ARG ASP SEQRES 28 A 542 ASN VAL HIS LEU VAL ASP THR LEU SER ALA PRO ILE GLU SEQRES 29 A 542 THR ILE THR PRO ARG GLY VAL ARG THR SER GLU ARG GLU SEQRES 30 A 542 TYR GLU LEU ASP SER LEU VAL LEU ALA THR GLY PHE ASP SEQRES 31 A 542 ALA LEU THR GLY ALA LEU PHE LYS ILE ASP ILE ARG GLY SEQRES 32 A 542 VAL GLY ASN VAL ALA LEU LYS GLU LYS TRP ALA ALA GLY SEQRES 33 A 542 PRO ARG THR TYR LEU GLY LEU SER THR ALA GLY PHE PRO SEQRES 34 A 542 ASN LEU PHE PHE ILE ALA GLY PRO GLY SER PRO SER ALA SEQRES 35 A 542 LEU SER ASN MET LEU VAL SER ILE GLU GLN HIS VAL GLU SEQRES 36 A 542 TRP VAL THR ASP HIS ILE ALA TYR MET PHE LYS ASN GLY SEQRES 37 A 542 LEU THR ARG SER GLU ALA VAL LEU GLU LYS GLU ASP GLU SEQRES 38 A 542 TRP VAL GLU HIS VAL ASN GLU ILE ALA ASP GLU THR LEU SEQRES 39 A 542 TYR PRO MET THR ALA SER TRP TYR THR GLY ALA ASN VAL SEQRES 40 A 542 PRO GLY LYS PRO ARG VAL PHE MET LEU TYR VAL GLY GLY SEQRES 41 A 542 PHE HIS ARG TYR ARG GLN ILE CYS ASP GLU VAL ALA ALA SEQRES 42 A 542 LYS GLY TYR GLU GLY PHE VAL LEU THR HET FAD A 700 53 HET NAP A 701 48 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 HOH *238(H2 O) HELIX 1 1 GLY A 25 LEU A 38 1 14 HELIX 2 2 GLY A 53 ASN A 58 1 6 HELIX 3 3 SER A 77 TRP A 84 1 8 HELIX 4 4 SER A 92 PHE A 107 1 16 HELIX 5 5 ASP A 108 SER A 111 5 4 HELIX 6 6 GLY A 163 PHE A 167 5 5 HELIX 7 7 GLY A 175 TRP A 177 5 3 HELIX 8 8 GLY A 195 ALA A 206 1 12 HELIX 9 9 ASP A 231 ARG A 241 1 11 HELIX 10 10 ARG A 241 ASN A 251 1 11 HELIX 11 11 SER A 269 GLY A 284 1 16 HELIX 12 12 PRO A 286 ALA A 291 5 6 HELIX 13 13 ASP A 298 ASN A 315 1 18 HELIX 14 14 ASP A 319 VAL A 327 1 9 HELIX 15 15 ASP A 343 PHE A 348 1 6 HELIX 16 16 THR A 393 LYS A 398 1 6 HELIX 17 17 GLY A 403 VAL A 407 5 5 HELIX 18 18 ALA A 408 TRP A 413 1 6 HELIX 19 19 PRO A 440 SER A 444 5 5 HELIX 20 20 ASN A 445 ASN A 467 1 23 HELIX 21 21 VAL A 475 GLU A 492 1 18 HELIX 22 22 LEU A 494 THR A 498 5 5 HELIX 23 23 GLY A 520 LYS A 534 1 15 SHEET 1 AA 5 ILE A 113 THR A 114 0 SHEET 2 AA 5 VAL A 42 ILE A 45 1 O VAL A 44 N THR A 114 SHEET 3 AA 5 GLU A 16 VAL A 22 1 O VAL A 19 N HIS A 43 SHEET 4 AA 5 ARG A 140 MET A 148 1 O ARG A 142 N VAL A 17 SHEET 5 AA 5 LEU A 431 PHE A 433 -1 O PHE A 432 N MET A 148 SHEET 1 AB 7 ILE A 113 THR A 114 0 SHEET 2 AB 7 VAL A 42 ILE A 45 1 O VAL A 44 N THR A 114 SHEET 3 AB 7 GLU A 16 VAL A 22 1 O VAL A 19 N HIS A 43 SHEET 4 AB 7 ARG A 140 MET A 148 1 O ARG A 142 N VAL A 17 SHEET 5 AB 7 THR A 130 THR A 135 -1 O TRP A 131 N ALA A 143 SHEET 6 AB 7 VAL A 119 ASP A 125 -1 N THR A 120 O ASP A 134 SHEET 7 AB 7 ASP A 400 ARG A 402 1 O ASP A 400 N ALA A 122 SHEET 1 AC 2 LEU A 431 PHE A 433 0 SHEET 2 AC 2 ARG A 140 MET A 148 -1 O LEU A 146 N PHE A 432 SHEET 1 AD 5 ASN A 170 HIS A 173 0 SHEET 2 AD 5 SER A 382 LEU A 385 1 O LEU A 383 N TYR A 172 SHEET 3 AD 5 ARG A 188 ILE A 192 1 O GLY A 190 N VAL A 384 SHEET 4 AD 5 GLU A 211 GLN A 216 1 O GLU A 211 N VAL A 189 SHEET 5 AD 5 VAL A 353 ASP A 357 1 O HIS A 354 N VAL A 214 SHEET 1 AE 2 ALA A 222 PRO A 224 0 SHEET 2 AE 2 ILE A 339 GLU A 341 1 O ILE A 339 N VAL A 223 SHEET 1 AF 3 ILE A 363 THR A 367 0 SHEET 2 AF 3 GLY A 370 THR A 373 -1 O GLY A 370 N THR A 367 SHEET 3 AF 3 GLU A 377 GLU A 379 -1 O TYR A 378 N VAL A 371 SHEET 1 AG 2 ARG A 471 ALA A 474 0 SHEET 2 AG 2 PHE A 539 THR A 542 -1 O VAL A 540 N GLU A 473 SITE 1 AC1 33 VAL A 22 GLY A 23 GLY A 25 PHE A 26 SITE 2 AC1 33 SER A 27 GLU A 46 THR A 47 GLY A 53 SITE 3 AC1 33 VAL A 54 TRP A 55 TRP A 57 ASN A 58 SITE 4 AC1 33 CYS A 65 ASP A 66 ILE A 67 TYR A 72 SITE 5 AC1 33 THR A 117 THR A 118 VAL A 119 ALA A 149 SITE 6 AC1 33 SER A 150 GLY A 151 GLN A 152 ILE A 399 SITE 7 AC1 33 MET A 446 ILE A 450 NAP A 701 HOH A2006 SITE 8 AC1 33 HOH A2008 HOH A2020 HOH A2076 HOH A2078 SITE 9 AC1 33 HOH A2176 SITE 1 AC2 37 TYR A 60 ARG A 64 CYS A 65 ASP A 66 SITE 2 AC2 37 LEU A 153 PRO A 159 PHE A 161 GLY A 193 SITE 3 AC2 37 THR A 194 GLY A 195 SER A 196 SER A 197 SITE 4 AC2 37 GLN A 200 ARG A 217 THR A 218 HIS A 220 SITE 5 AC2 37 LYS A 336 ARG A 337 ALA A 386 THR A 387 SITE 6 AC2 37 GLY A 388 PHE A 389 TRP A 501 FAD A 700 SITE 7 AC2 37 HOH A2030 HOH A2080 HOH A2091 HOH A2102 SITE 8 AC2 37 HOH A2103 HOH A2104 HOH A2159 HOH A2172 SITE 9 AC2 37 HOH A2173 HOH A2218 HOH A2219 HOH A2237 SITE 10 AC2 37 HOH A2238 CRYST1 107.920 107.920 106.830 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009266 0.005350 0.000000 0.00000 SCALE2 0.000000 0.010700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009361 0.00000