data_2YMA # _entry.id 2YMA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YMA pdb_00002yma 10.2210/pdb2yma/pdb PDBE EBI-48567 ? ? WWPDB D_1290048567 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-25 2 'Structure model' 1 1 2012-03-28 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YMA _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-06-07 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hanna, J.' 1 'Schuetz, A.' 2 'Zimmermann, F.' 3 'Behlke, J.' 4 'Sommer, T.' 5 'Heinemann, U.' 6 # _citation.id primary _citation.title ;Structural and Biochemical Basis of Yos9 Protein Dimerization and Possible Contribution to Self-Association of 3-Hydroxy-3-Methylglutaryl-Coenzyme a Reductase Degradation Ubiquitin-Ligase Complex. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 8633 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22262864 _citation.pdbx_database_id_DOI 10.1074/JBC.M111.317644 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hanna, J.' 1 ? primary 'Schutz, A.' 2 ? primary 'Zimmermann, F.' 3 ? primary 'Behlke, J.' 4 ? primary 'Sommer, T.' 5 ? primary 'Heinemann, U.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN OS-9 HOMOLOG' 18258.367 2 ? ? 'DIMERIZATION DOMAIN, RESIDUES 266-424' ? 2 water nat water 18.015 50 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name YOS9P # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSIGSNSIDLITKYEPIFLGSGIYFLRPFNTDERDKLMVTDNAMSNWDEITETYYQKFGNAINKMLSLRLVSLPNGHILQ PGDSCVWLAEVVDMKDRFQTTLSLNILNSQRAEIFFNKTFTFNEDNGNFLSYKIGDHGESTELGQITHSNKADINTAEIR S ; _entity_poly.pdbx_seq_one_letter_code_can ;GSIGSNSIDLITKYEPIFLGSGIYFLRPFNTDERDKLMVTDNAMSNWDEITETYYQKFGNAINKMLSLRLVSLPNGHILQ PGDSCVWLAEVVDMKDRFQTTLSLNILNSQRAEIFFNKTFTFNEDNGNFLSYKIGDHGESTELGQITHSNKADINTAEIR S ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ILE n 1 4 GLY n 1 5 SER n 1 6 ASN n 1 7 SER n 1 8 ILE n 1 9 ASP n 1 10 LEU n 1 11 ILE n 1 12 THR n 1 13 LYS n 1 14 TYR n 1 15 GLU n 1 16 PRO n 1 17 ILE n 1 18 PHE n 1 19 LEU n 1 20 GLY n 1 21 SER n 1 22 GLY n 1 23 ILE n 1 24 TYR n 1 25 PHE n 1 26 LEU n 1 27 ARG n 1 28 PRO n 1 29 PHE n 1 30 ASN n 1 31 THR n 1 32 ASP n 1 33 GLU n 1 34 ARG n 1 35 ASP n 1 36 LYS n 1 37 LEU n 1 38 MET n 1 39 VAL n 1 40 THR n 1 41 ASP n 1 42 ASN n 1 43 ALA n 1 44 MET n 1 45 SER n 1 46 ASN n 1 47 TRP n 1 48 ASP n 1 49 GLU n 1 50 ILE n 1 51 THR n 1 52 GLU n 1 53 THR n 1 54 TYR n 1 55 TYR n 1 56 GLN n 1 57 LYS n 1 58 PHE n 1 59 GLY n 1 60 ASN n 1 61 ALA n 1 62 ILE n 1 63 ASN n 1 64 LYS n 1 65 MET n 1 66 LEU n 1 67 SER n 1 68 LEU n 1 69 ARG n 1 70 LEU n 1 71 VAL n 1 72 SER n 1 73 LEU n 1 74 PRO n 1 75 ASN n 1 76 GLY n 1 77 HIS n 1 78 ILE n 1 79 LEU n 1 80 GLN n 1 81 PRO n 1 82 GLY n 1 83 ASP n 1 84 SER n 1 85 CYS n 1 86 VAL n 1 87 TRP n 1 88 LEU n 1 89 ALA n 1 90 GLU n 1 91 VAL n 1 92 VAL n 1 93 ASP n 1 94 MET n 1 95 LYS n 1 96 ASP n 1 97 ARG n 1 98 PHE n 1 99 GLN n 1 100 THR n 1 101 THR n 1 102 LEU n 1 103 SER n 1 104 LEU n 1 105 ASN n 1 106 ILE n 1 107 LEU n 1 108 ASN n 1 109 SER n 1 110 GLN n 1 111 ARG n 1 112 ALA n 1 113 GLU n 1 114 ILE n 1 115 PHE n 1 116 PHE n 1 117 ASN n 1 118 LYS n 1 119 THR n 1 120 PHE n 1 121 THR n 1 122 PHE n 1 123 ASN n 1 124 GLU n 1 125 ASP n 1 126 ASN n 1 127 GLY n 1 128 ASN n 1 129 PHE n 1 130 LEU n 1 131 SER n 1 132 TYR n 1 133 LYS n 1 134 ILE n 1 135 GLY n 1 136 ASP n 1 137 HIS n 1 138 GLY n 1 139 GLU n 1 140 SER n 1 141 THR n 1 142 GLU n 1 143 LEU n 1 144 GLY n 1 145 GLN n 1 146 ILE n 1 147 THR n 1 148 HIS n 1 149 SER n 1 150 ASN n 1 151 LYS n 1 152 ALA n 1 153 ASP n 1 154 ILE n 1 155 ASN n 1 156 THR n 1 157 ALA n 1 158 GLU n 1 159 ILE n 1 160 ARG n 1 161 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;BAKER'S YEAST ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SACCHAROMYCES CEREVISIAE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'ROSETTA2 T1R' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PQLINKH _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 264 ? ? ? A . n A 1 2 SER 2 265 265 SER SER A . n A 1 3 ILE 3 266 266 ILE ILE A . n A 1 4 GLY 4 267 267 GLY GLY A . n A 1 5 SER 5 268 268 SER SER A . n A 1 6 ASN 6 269 269 ASN ASN A . n A 1 7 SER 7 270 270 SER SER A . n A 1 8 ILE 8 271 271 ILE ILE A . n A 1 9 ASP 9 272 272 ASP ASP A . n A 1 10 LEU 10 273 273 LEU LEU A . n A 1 11 ILE 11 274 274 ILE ILE A . n A 1 12 THR 12 275 275 THR THR A . n A 1 13 LYS 13 276 276 LYS LYS A . n A 1 14 TYR 14 277 277 TYR TYR A . n A 1 15 GLU 15 278 278 GLU GLU A . n A 1 16 PRO 16 279 279 PRO PRO A . n A 1 17 ILE 17 280 280 ILE ILE A . n A 1 18 PHE 18 281 281 PHE PHE A . n A 1 19 LEU 19 282 282 LEU LEU A . n A 1 20 GLY 20 283 283 GLY GLY A . n A 1 21 SER 21 284 284 SER SER A . n A 1 22 GLY 22 285 285 GLY GLY A . n A 1 23 ILE 23 286 286 ILE ILE A . n A 1 24 TYR 24 287 287 TYR TYR A . n A 1 25 PHE 25 288 288 PHE PHE A . n A 1 26 LEU 26 289 289 LEU LEU A . n A 1 27 ARG 27 290 290 ARG ARG A . n A 1 28 PRO 28 291 291 PRO PRO A . n A 1 29 PHE 29 292 292 PHE PHE A . n A 1 30 ASN 30 293 293 ASN ASN A . n A 1 31 THR 31 294 294 THR THR A . n A 1 32 ASP 32 295 295 ASP ASP A . n A 1 33 GLU 33 296 296 GLU GLU A . n A 1 34 ARG 34 297 297 ARG ARG A . n A 1 35 ASP 35 298 298 ASP ASP A . n A 1 36 LYS 36 299 299 LYS LYS A . n A 1 37 LEU 37 300 300 LEU LEU A . n A 1 38 MET 38 301 301 MET MET A . n A 1 39 VAL 39 302 302 VAL VAL A . n A 1 40 THR 40 303 303 THR THR A . n A 1 41 ASP 41 304 304 ASP ASP A . n A 1 42 ASN 42 305 305 ASN ASN A . n A 1 43 ALA 43 306 306 ALA ALA A . n A 1 44 MET 44 307 307 MET MET A . n A 1 45 SER 45 308 308 SER SER A . n A 1 46 ASN 46 309 309 ASN ASN A . n A 1 47 TRP 47 310 310 TRP TRP A . n A 1 48 ASP 48 311 311 ASP ASP A . n A 1 49 GLU 49 312 312 GLU GLU A . n A 1 50 ILE 50 313 313 ILE ILE A . n A 1 51 THR 51 314 314 THR THR A . n A 1 52 GLU 52 315 315 GLU GLU A . n A 1 53 THR 53 316 316 THR THR A . n A 1 54 TYR 54 317 317 TYR TYR A . n A 1 55 TYR 55 318 318 TYR TYR A . n A 1 56 GLN 56 319 319 GLN GLN A . n A 1 57 LYS 57 320 320 LYS LYS A . n A 1 58 PHE 58 321 321 PHE PHE A . n A 1 59 GLY 59 322 322 GLY GLY A . n A 1 60 ASN 60 323 323 ASN ASN A . n A 1 61 ALA 61 324 324 ALA ALA A . n A 1 62 ILE 62 325 325 ILE ILE A . n A 1 63 ASN 63 326 326 ASN ASN A . n A 1 64 LYS 64 327 327 LYS LYS A . n A 1 65 MET 65 328 328 MET MET A . n A 1 66 LEU 66 329 329 LEU LEU A . n A 1 67 SER 67 330 330 SER SER A . n A 1 68 LEU 68 331 331 LEU LEU A . n A 1 69 ARG 69 332 332 ARG ARG A . n A 1 70 LEU 70 333 333 LEU LEU A . n A 1 71 VAL 71 334 334 VAL VAL A . n A 1 72 SER 72 335 335 SER SER A . n A 1 73 LEU 73 336 336 LEU LEU A . n A 1 74 PRO 74 337 337 PRO PRO A . n A 1 75 ASN 75 338 338 ASN ASN A . n A 1 76 GLY 76 339 339 GLY GLY A . n A 1 77 HIS 77 340 340 HIS HIS A . n A 1 78 ILE 78 341 341 ILE ILE A . n A 1 79 LEU 79 342 342 LEU LEU A . n A 1 80 GLN 80 343 343 GLN GLN A . n A 1 81 PRO 81 344 344 PRO PRO A . n A 1 82 GLY 82 345 345 GLY GLY A . n A 1 83 ASP 83 346 346 ASP ASP A . n A 1 84 SER 84 347 347 SER SER A . n A 1 85 CYS 85 348 348 CYS CYS A . n A 1 86 VAL 86 349 349 VAL VAL A . n A 1 87 TRP 87 350 350 TRP TRP A . n A 1 88 LEU 88 351 351 LEU LEU A . n A 1 89 ALA 89 352 352 ALA ALA A . n A 1 90 GLU 90 353 353 GLU GLU A . n A 1 91 VAL 91 354 354 VAL VAL A . n A 1 92 VAL 92 355 355 VAL VAL A . n A 1 93 ASP 93 356 356 ASP ASP A . n A 1 94 MET 94 357 357 MET MET A . n A 1 95 LYS 95 358 358 LYS LYS A . n A 1 96 ASP 96 359 359 ASP ASP A . n A 1 97 ARG 97 360 360 ARG ARG A . n A 1 98 PHE 98 361 361 PHE PHE A . n A 1 99 GLN 99 362 362 GLN GLN A . n A 1 100 THR 100 363 363 THR THR A . n A 1 101 THR 101 364 364 THR THR A . n A 1 102 LEU 102 365 365 LEU LEU A . n A 1 103 SER 103 366 366 SER SER A . n A 1 104 LEU 104 367 367 LEU LEU A . n A 1 105 ASN 105 368 368 ASN ASN A . n A 1 106 ILE 106 369 369 ILE ILE A . n A 1 107 LEU 107 370 370 LEU LEU A . n A 1 108 ASN 108 371 371 ASN ASN A . n A 1 109 SER 109 372 372 SER SER A . n A 1 110 GLN 110 373 373 GLN GLN A . n A 1 111 ARG 111 374 374 ARG ARG A . n A 1 112 ALA 112 375 375 ALA ALA A . n A 1 113 GLU 113 376 376 GLU GLU A . n A 1 114 ILE 114 377 377 ILE ILE A . n A 1 115 PHE 115 378 378 PHE PHE A . n A 1 116 PHE 116 379 379 PHE PHE A . n A 1 117 ASN 117 380 380 ASN ASN A . n A 1 118 LYS 118 381 381 LYS LYS A . n A 1 119 THR 119 382 382 THR THR A . n A 1 120 PHE 120 383 383 PHE PHE A . n A 1 121 THR 121 384 384 THR THR A . n A 1 122 PHE 122 385 385 PHE PHE A . n A 1 123 ASN 123 386 386 ASN ASN A . n A 1 124 GLU 124 387 387 GLU GLU A . n A 1 125 ASP 125 388 388 ASP ASP A . n A 1 126 ASN 126 389 389 ASN ASN A . n A 1 127 GLY 127 390 390 GLY GLY A . n A 1 128 ASN 128 391 391 ASN ASN A . n A 1 129 PHE 129 392 392 PHE PHE A . n A 1 130 LEU 130 393 393 LEU LEU A . n A 1 131 SER 131 394 394 SER SER A . n A 1 132 TYR 132 395 395 TYR TYR A . n A 1 133 LYS 133 396 396 LYS LYS A . n A 1 134 ILE 134 397 397 ILE ILE A . n A 1 135 GLY 135 398 398 GLY GLY A . n A 1 136 ASP 136 399 399 ASP ASP A . n A 1 137 HIS 137 400 ? ? ? A . n A 1 138 GLY 138 401 ? ? ? A . n A 1 139 GLU 139 402 ? ? ? A . n A 1 140 SER 140 403 ? ? ? A . n A 1 141 THR 141 404 ? ? ? A . n A 1 142 GLU 142 405 ? ? ? A . n A 1 143 LEU 143 406 ? ? ? A . n A 1 144 GLY 144 407 ? ? ? A . n A 1 145 GLN 145 408 ? ? ? A . n A 1 146 ILE 146 409 ? ? ? A . n A 1 147 THR 147 410 ? ? ? A . n A 1 148 HIS 148 411 ? ? ? A . n A 1 149 SER 149 412 ? ? ? A . n A 1 150 ASN 150 413 ? ? ? A . n A 1 151 LYS 151 414 ? ? ? A . n A 1 152 ALA 152 415 ? ? ? A . n A 1 153 ASP 153 416 ? ? ? A . n A 1 154 ILE 154 417 ? ? ? A . n A 1 155 ASN 155 418 ? ? ? A . n A 1 156 THR 156 419 ? ? ? A . n A 1 157 ALA 157 420 ? ? ? A . n A 1 158 GLU 158 421 ? ? ? A . n A 1 159 ILE 159 422 ? ? ? A . n A 1 160 ARG 160 423 ? ? ? A . n A 1 161 SER 161 424 ? ? ? A . n B 1 1 GLY 1 264 ? ? ? B . n B 1 2 SER 2 265 ? ? ? B . n B 1 3 ILE 3 266 266 ILE ILE B . n B 1 4 GLY 4 267 267 GLY GLY B . n B 1 5 SER 5 268 268 SER SER B . n B 1 6 ASN 6 269 269 ASN ASN B . n B 1 7 SER 7 270 270 SER SER B . n B 1 8 ILE 8 271 271 ILE ILE B . n B 1 9 ASP 9 272 272 ASP ASP B . n B 1 10 LEU 10 273 273 LEU LEU B . n B 1 11 ILE 11 274 274 ILE ILE B . n B 1 12 THR 12 275 275 THR THR B . n B 1 13 LYS 13 276 276 LYS LYS B . n B 1 14 TYR 14 277 277 TYR TYR B . n B 1 15 GLU 15 278 278 GLU GLU B . n B 1 16 PRO 16 279 279 PRO PRO B . n B 1 17 ILE 17 280 280 ILE ILE B . n B 1 18 PHE 18 281 281 PHE PHE B . n B 1 19 LEU 19 282 282 LEU LEU B . n B 1 20 GLY 20 283 283 GLY GLY B . n B 1 21 SER 21 284 284 SER SER B . n B 1 22 GLY 22 285 285 GLY GLY B . n B 1 23 ILE 23 286 286 ILE ILE B . n B 1 24 TYR 24 287 287 TYR TYR B . n B 1 25 PHE 25 288 288 PHE PHE B . n B 1 26 LEU 26 289 289 LEU LEU B . n B 1 27 ARG 27 290 290 ARG ARG B . n B 1 28 PRO 28 291 291 PRO PRO B . n B 1 29 PHE 29 292 292 PHE PHE B . n B 1 30 ASN 30 293 293 ASN ASN B . n B 1 31 THR 31 294 294 THR THR B . n B 1 32 ASP 32 295 295 ASP ASP B . n B 1 33 GLU 33 296 296 GLU GLU B . n B 1 34 ARG 34 297 297 ARG ARG B . n B 1 35 ASP 35 298 298 ASP ASP B . n B 1 36 LYS 36 299 299 LYS LYS B . n B 1 37 LEU 37 300 300 LEU LEU B . n B 1 38 MET 38 301 301 MET MET B . n B 1 39 VAL 39 302 302 VAL VAL B . n B 1 40 THR 40 303 303 THR THR B . n B 1 41 ASP 41 304 304 ASP ASP B . n B 1 42 ASN 42 305 305 ASN ASN B . n B 1 43 ALA 43 306 306 ALA ALA B . n B 1 44 MET 44 307 307 MET MET B . n B 1 45 SER 45 308 308 SER SER B . n B 1 46 ASN 46 309 309 ASN ASN B . n B 1 47 TRP 47 310 310 TRP TRP B . n B 1 48 ASP 48 311 311 ASP ASP B . n B 1 49 GLU 49 312 312 GLU GLU B . n B 1 50 ILE 50 313 313 ILE ILE B . n B 1 51 THR 51 314 314 THR THR B . n B 1 52 GLU 52 315 315 GLU GLU B . n B 1 53 THR 53 316 316 THR THR B . n B 1 54 TYR 54 317 317 TYR TYR B . n B 1 55 TYR 55 318 318 TYR TYR B . n B 1 56 GLN 56 319 319 GLN GLN B . n B 1 57 LYS 57 320 320 LYS LYS B . n B 1 58 PHE 58 321 321 PHE PHE B . n B 1 59 GLY 59 322 322 GLY GLY B . n B 1 60 ASN 60 323 323 ASN ASN B . n B 1 61 ALA 61 324 324 ALA ALA B . n B 1 62 ILE 62 325 325 ILE ILE B . n B 1 63 ASN 63 326 326 ASN ASN B . n B 1 64 LYS 64 327 327 LYS LYS B . n B 1 65 MET 65 328 328 MET MET B . n B 1 66 LEU 66 329 329 LEU LEU B . n B 1 67 SER 67 330 330 SER SER B . n B 1 68 LEU 68 331 331 LEU LEU B . n B 1 69 ARG 69 332 332 ARG ARG B . n B 1 70 LEU 70 333 333 LEU LEU B . n B 1 71 VAL 71 334 334 VAL VAL B . n B 1 72 SER 72 335 335 SER SER B . n B 1 73 LEU 73 336 336 LEU LEU B . n B 1 74 PRO 74 337 337 PRO PRO B . n B 1 75 ASN 75 338 338 ASN ASN B . n B 1 76 GLY 76 339 339 GLY GLY B . n B 1 77 HIS 77 340 340 HIS HIS B . n B 1 78 ILE 78 341 341 ILE ILE B . n B 1 79 LEU 79 342 342 LEU LEU B . n B 1 80 GLN 80 343 343 GLN GLN B . n B 1 81 PRO 81 344 344 PRO PRO B . n B 1 82 GLY 82 345 345 GLY GLY B . n B 1 83 ASP 83 346 346 ASP ASP B . n B 1 84 SER 84 347 347 SER SER B . n B 1 85 CYS 85 348 348 CYS CYS B . n B 1 86 VAL 86 349 349 VAL VAL B . n B 1 87 TRP 87 350 350 TRP TRP B . n B 1 88 LEU 88 351 351 LEU LEU B . n B 1 89 ALA 89 352 352 ALA ALA B . n B 1 90 GLU 90 353 353 GLU GLU B . n B 1 91 VAL 91 354 354 VAL VAL B . n B 1 92 VAL 92 355 355 VAL VAL B . n B 1 93 ASP 93 356 356 ASP ASP B . n B 1 94 MET 94 357 357 MET MET B . n B 1 95 LYS 95 358 358 LYS LYS B . n B 1 96 ASP 96 359 359 ASP ASP B . n B 1 97 ARG 97 360 360 ARG ARG B . n B 1 98 PHE 98 361 361 PHE PHE B . n B 1 99 GLN 99 362 362 GLN GLN B . n B 1 100 THR 100 363 363 THR THR B . n B 1 101 THR 101 364 364 THR THR B . n B 1 102 LEU 102 365 365 LEU LEU B . n B 1 103 SER 103 366 366 SER SER B . n B 1 104 LEU 104 367 367 LEU LEU B . n B 1 105 ASN 105 368 368 ASN ASN B . n B 1 106 ILE 106 369 369 ILE ILE B . n B 1 107 LEU 107 370 370 LEU LEU B . n B 1 108 ASN 108 371 371 ASN ASN B . n B 1 109 SER 109 372 372 SER SER B . n B 1 110 GLN 110 373 373 GLN GLN B . n B 1 111 ARG 111 374 374 ARG ARG B . n B 1 112 ALA 112 375 375 ALA ALA B . n B 1 113 GLU 113 376 376 GLU GLU B . n B 1 114 ILE 114 377 377 ILE ILE B . n B 1 115 PHE 115 378 378 PHE PHE B . n B 1 116 PHE 116 379 379 PHE PHE B . n B 1 117 ASN 117 380 380 ASN ASN B . n B 1 118 LYS 118 381 381 LYS LYS B . n B 1 119 THR 119 382 382 THR THR B . n B 1 120 PHE 120 383 383 PHE PHE B . n B 1 121 THR 121 384 384 THR THR B . n B 1 122 PHE 122 385 385 PHE PHE B . n B 1 123 ASN 123 386 386 ASN ASN B . n B 1 124 GLU 124 387 387 GLU GLU B . n B 1 125 ASP 125 388 388 ASP ASP B . n B 1 126 ASN 126 389 389 ASN ASN B . n B 1 127 GLY 127 390 390 GLY GLY B . n B 1 128 ASN 128 391 391 ASN ASN B . n B 1 129 PHE 129 392 392 PHE PHE B . n B 1 130 LEU 130 393 393 LEU LEU B . n B 1 131 SER 131 394 394 SER SER B . n B 1 132 TYR 132 395 395 TYR TYR B . n B 1 133 LYS 133 396 396 LYS LYS B . n B 1 134 ILE 134 397 397 ILE ILE B . n B 1 135 GLY 135 398 ? ? ? B . n B 1 136 ASP 136 399 ? ? ? B . n B 1 137 HIS 137 400 ? ? ? B . n B 1 138 GLY 138 401 ? ? ? B . n B 1 139 GLU 139 402 ? ? ? B . n B 1 140 SER 140 403 ? ? ? B . n B 1 141 THR 141 404 ? ? ? B . n B 1 142 GLU 142 405 ? ? ? B . n B 1 143 LEU 143 406 ? ? ? B . n B 1 144 GLY 144 407 ? ? ? B . n B 1 145 GLN 145 408 ? ? ? B . n B 1 146 ILE 146 409 ? ? ? B . n B 1 147 THR 147 410 ? ? ? B . n B 1 148 HIS 148 411 ? ? ? B . n B 1 149 SER 149 412 ? ? ? B . n B 1 150 ASN 150 413 ? ? ? B . n B 1 151 LYS 151 414 ? ? ? B . n B 1 152 ALA 152 415 ? ? ? B . n B 1 153 ASP 153 416 ? ? ? B . n B 1 154 ILE 154 417 ? ? ? B . n B 1 155 ASN 155 418 ? ? ? B . n B 1 156 THR 156 419 ? ? ? B . n B 1 157 ALA 157 420 ? ? ? B . n B 1 158 GLU 158 421 ? ? ? B . n B 1 159 ILE 159 422 ? ? ? B . n B 1 160 ARG 160 423 ? ? ? B . n B 1 161 SER 161 424 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 2001 2001 HOH HOH A . C 2 HOH 2 2002 2002 HOH HOH A . C 2 HOH 3 2003 2003 HOH HOH A . C 2 HOH 4 2004 2004 HOH HOH A . C 2 HOH 5 2005 2005 HOH HOH A . C 2 HOH 6 2006 2006 HOH HOH A . C 2 HOH 7 2007 2007 HOH HOH A . C 2 HOH 8 2008 2008 HOH HOH A . C 2 HOH 9 2009 2009 HOH HOH A . C 2 HOH 10 2010 2010 HOH HOH A . C 2 HOH 11 2011 2011 HOH HOH A . C 2 HOH 12 2012 2012 HOH HOH A . C 2 HOH 13 2013 2013 HOH HOH A . C 2 HOH 14 2014 2014 HOH HOH A . C 2 HOH 15 2015 2015 HOH HOH A . C 2 HOH 16 2016 2016 HOH HOH A . C 2 HOH 17 2017 2017 HOH HOH A . C 2 HOH 18 2018 2018 HOH HOH A . C 2 HOH 19 2019 2019 HOH HOH A . C 2 HOH 20 2020 2020 HOH HOH A . C 2 HOH 21 2021 2021 HOH HOH A . C 2 HOH 22 2022 2022 HOH HOH A . C 2 HOH 23 2023 2023 HOH HOH A . D 2 HOH 1 2001 2001 HOH HOH B . D 2 HOH 2 2002 2002 HOH HOH B . D 2 HOH 3 2003 2003 HOH HOH B . D 2 HOH 4 2004 2004 HOH HOH B . D 2 HOH 5 2005 2005 HOH HOH B . D 2 HOH 6 2006 2006 HOH HOH B . D 2 HOH 7 2007 2007 HOH HOH B . D 2 HOH 8 2008 2008 HOH HOH B . D 2 HOH 9 2009 2009 HOH HOH B . D 2 HOH 10 2010 2010 HOH HOH B . D 2 HOH 11 2011 2011 HOH HOH B . D 2 HOH 12 2012 2012 HOH HOH B . D 2 HOH 13 2013 2013 HOH HOH B . D 2 HOH 14 2014 2014 HOH HOH B . D 2 HOH 15 2015 2015 HOH HOH B . D 2 HOH 16 2016 2016 HOH HOH B . D 2 HOH 17 2017 2017 HOH HOH B . D 2 HOH 18 2018 2018 HOH HOH B . D 2 HOH 19 2019 2019 HOH HOH B . D 2 HOH 20 2020 2020 HOH HOH B . D 2 HOH 21 2021 2021 HOH HOH B . D 2 HOH 22 2022 2022 HOH HOH B . D 2 HOH 23 2023 2023 HOH HOH B . D 2 HOH 24 2024 2024 HOH HOH B . D 2 HOH 25 2025 2025 HOH HOH B . D 2 HOH 26 2026 2026 HOH HOH B . D 2 HOH 27 2027 2027 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 265 ? OG ? A SER 2 OG 2 1 Y 1 A LYS 276 ? CG ? A LYS 13 CG 3 1 Y 1 A LYS 276 ? CD ? A LYS 13 CD 4 1 Y 1 A LYS 276 ? CE ? A LYS 13 CE 5 1 Y 1 A LYS 276 ? NZ ? A LYS 13 NZ 6 1 Y 1 A PHE 292 ? CG ? A PHE 29 CG 7 1 Y 1 A PHE 292 ? CD1 ? A PHE 29 CD1 8 1 Y 1 A PHE 292 ? CD2 ? A PHE 29 CD2 9 1 Y 1 A PHE 292 ? CE1 ? A PHE 29 CE1 10 1 Y 1 A PHE 292 ? CE2 ? A PHE 29 CE2 11 1 Y 1 A PHE 292 ? CZ ? A PHE 29 CZ 12 1 Y 1 A THR 294 ? OG1 ? A THR 31 OG1 13 1 Y 1 A THR 294 ? CG2 ? A THR 31 CG2 14 1 Y 1 A ASP 295 ? CG ? A ASP 32 CG 15 1 Y 1 A ASP 295 ? OD1 ? A ASP 32 OD1 16 1 Y 1 A ASP 295 ? OD2 ? A ASP 32 OD2 17 1 Y 1 A GLU 312 ? CG ? A GLU 49 CG 18 1 Y 1 A GLU 312 ? CD ? A GLU 49 CD 19 1 Y 1 A GLU 312 ? OE1 ? A GLU 49 OE1 20 1 Y 1 A GLU 312 ? OE2 ? A GLU 49 OE2 21 1 Y 1 A GLN 343 ? CG ? A GLN 80 CG 22 1 Y 1 A GLN 343 ? CD ? A GLN 80 CD 23 1 Y 1 A GLN 343 ? OE1 ? A GLN 80 OE1 24 1 Y 1 A GLN 343 ? NE2 ? A GLN 80 NE2 25 1 Y 1 A LYS 358 ? CG ? A LYS 95 CG 26 1 Y 1 A LYS 358 ? CD ? A LYS 95 CD 27 1 Y 1 A LYS 358 ? CE ? A LYS 95 CE 28 1 Y 1 A LYS 358 ? NZ ? A LYS 95 NZ 29 1 Y 1 A GLN 373 ? CG ? A GLN 110 CG 30 1 Y 1 A GLN 373 ? CD ? A GLN 110 CD 31 1 Y 1 A GLN 373 ? OE1 ? A GLN 110 OE1 32 1 Y 1 A GLN 373 ? NE2 ? A GLN 110 NE2 33 1 Y 1 A ARG 374 ? CG ? A ARG 111 CG 34 1 Y 1 A ARG 374 ? CD ? A ARG 111 CD 35 1 Y 1 A ARG 374 ? NE ? A ARG 111 NE 36 1 Y 1 A ARG 374 ? CZ ? A ARG 111 CZ 37 1 Y 1 A ARG 374 ? NH1 ? A ARG 111 NH1 38 1 Y 1 A ARG 374 ? NH2 ? A ARG 111 NH2 39 1 Y 1 A LYS 381 ? CG ? A LYS 118 CG 40 1 Y 1 A LYS 381 ? CD ? A LYS 118 CD 41 1 Y 1 A LYS 381 ? CE ? A LYS 118 CE 42 1 Y 1 A LYS 381 ? NZ ? A LYS 118 NZ 43 1 Y 1 A GLU 387 ? CG ? A GLU 124 CG 44 1 Y 1 A GLU 387 ? CD ? A GLU 124 CD 45 1 Y 1 A GLU 387 ? OE1 ? A GLU 124 OE1 46 1 Y 1 A GLU 387 ? OE2 ? A GLU 124 OE2 47 1 Y 1 A ASP 399 ? CG ? A ASP 136 CG 48 1 Y 1 A ASP 399 ? OD1 ? A ASP 136 OD1 49 1 Y 1 A ASP 399 ? OD2 ? A ASP 136 OD2 50 1 Y 1 B ILE 266 ? CG1 ? B ILE 3 CG1 51 1 Y 1 B ILE 266 ? CG2 ? B ILE 3 CG2 52 1 Y 1 B ILE 266 ? CD1 ? B ILE 3 CD1 53 1 Y 1 B ASN 305 ? CG ? B ASN 42 CG 54 1 Y 1 B ASN 305 ? OD1 ? B ASN 42 OD1 55 1 Y 1 B ASN 305 ? ND2 ? B ASN 42 ND2 56 1 Y 1 B GLU 312 ? CG ? B GLU 49 CG 57 1 Y 1 B GLU 312 ? CD ? B GLU 49 CD 58 1 Y 1 B GLU 312 ? OE1 ? B GLU 49 OE1 59 1 Y 1 B GLU 312 ? OE2 ? B GLU 49 OE2 60 1 Y 1 B GLU 315 ? CG ? B GLU 52 CG 61 1 Y 1 B GLU 315 ? CD ? B GLU 52 CD 62 1 Y 1 B GLU 315 ? OE1 ? B GLU 52 OE1 63 1 Y 1 B GLU 315 ? OE2 ? B GLU 52 OE2 64 1 Y 1 B GLN 319 ? CG ? B GLN 56 CG 65 1 Y 1 B GLN 319 ? CD ? B GLN 56 CD 66 1 Y 1 B GLN 319 ? OE1 ? B GLN 56 OE1 67 1 Y 1 B GLN 319 ? NE2 ? B GLN 56 NE2 68 1 Y 1 B GLN 343 ? CG ? B GLN 80 CG 69 1 Y 1 B GLN 343 ? CD ? B GLN 80 CD 70 1 Y 1 B GLN 343 ? OE1 ? B GLN 80 OE1 71 1 Y 1 B GLN 343 ? NE2 ? B GLN 80 NE2 72 1 Y 1 B LYS 358 ? CG ? B LYS 95 CG 73 1 Y 1 B LYS 358 ? CD ? B LYS 95 CD 74 1 Y 1 B LYS 358 ? CE ? B LYS 95 CE 75 1 Y 1 B LYS 358 ? NZ ? B LYS 95 NZ 76 1 Y 1 B SER 372 ? OG ? B SER 109 OG 77 1 Y 1 B GLN 373 ? CG ? B GLN 110 CG 78 1 Y 1 B GLN 373 ? CD ? B GLN 110 CD 79 1 Y 1 B GLN 373 ? OE1 ? B GLN 110 OE1 80 1 Y 1 B GLN 373 ? NE2 ? B GLN 110 NE2 81 1 Y 1 B ARG 374 ? CG ? B ARG 111 CG 82 1 Y 1 B ARG 374 ? CD ? B ARG 111 CD 83 1 Y 1 B ARG 374 ? NE ? B ARG 111 NE 84 1 Y 1 B ARG 374 ? CZ ? B ARG 111 CZ 85 1 Y 1 B ARG 374 ? NH1 ? B ARG 111 NH1 86 1 Y 1 B ARG 374 ? NH2 ? B ARG 111 NH2 87 1 Y 1 B GLU 387 ? CG ? B GLU 124 CG 88 1 Y 1 B GLU 387 ? CD ? B GLU 124 CD 89 1 Y 1 B GLU 387 ? OE1 ? B GLU 124 OE1 90 1 Y 1 B GLU 387 ? OE2 ? B GLU 124 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 PHENIX phasing . ? 4 # _cell.entry_id 2YMA _cell.length_a 160.800 _cell.length_b 160.800 _cell.length_c 97.660 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YMA _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # _exptl.entry_id 2YMA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.3 _exptl_crystal.density_percent_sol 63 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.55 M NAH2PO4, 0.55 M KH2PO4, 0.1 M TRIS, PH 5.05.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2010-01-19 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI-111 CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength 0.91841 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YMA _reflns.observed_criterion_sigma_I 2.9 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.80 _reflns.d_resolution_high 2.54 _reflns.number_obs 15832 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.20 _reflns.B_iso_Wilson_estimate 54.12 _reflns.pdbx_redundancy 5.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.54 _reflns_shell.d_res_low 2.61 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.60 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.90 _reflns_shell.pdbx_redundancy 5.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YMA _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15831 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.793 _refine.ls_d_res_high 2.545 _refine.ls_percent_reflns_obs 98.93 _refine.ls_R_factor_obs 0.1830 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1811 _refine.ls_R_factor_R_free 0.2204 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 790 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 68.18 _refine.aniso_B[1][1] -9.0506 _refine.aniso_B[2][2] -9.0506 _refine.aniso_B[3][3] 18.1012 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.399 _refine.solvent_model_param_bsol 81.359 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ;REFINED COORDINATES WAS VALIDATED USING MOLPROBITY. OUTPUT SCORES: BAD ROTAMERS, 9/220 (4.1%) RAMACHANDRAN OUTLIERS, 0/263 (0.0%); RAMACHANDRAN FAVORED 256/263 (97.3%). ; _refine.pdbx_starting_model 'SEMET DERIVATIVE REFINED MODEL SOLVED BY MAD' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.20 _refine.pdbx_overall_phase_error 22.15 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2074 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 2124 _refine_hist.d_res_high 2.545 _refine_hist.d_res_low 32.793 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 2119 'X-RAY DIFFRACTION' ? f_angle_d 1.145 ? ? 2880 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.553 ? ? 739 'X-RAY DIFFRACTION' ? f_chiral_restr 0.080 ? ? 328 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 370 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 A 710 ? ? POSITIONAL 1 1 'X-RAY DIFFRACTION' ? ? ? ? ? ? 2 B 710 0.138 ? POSITIONAL 1 2 'X-RAY DIFFRACTION' ? ? ? ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.5454 2.7048 2430 0.2177 97.00 0.2794 . . 128 . . 'X-RAY DIFFRACTION' . 2.7048 2.9135 2508 0.2091 100.00 0.2904 . . 130 . . 'X-RAY DIFFRACTION' . 2.9135 3.2065 2499 0.1950 100.00 0.2609 . . 131 . . 'X-RAY DIFFRACTION' . 3.2065 3.6699 2511 0.1848 100.00 0.2417 . . 133 . . 'X-RAY DIFFRACTION' . 3.6699 4.6217 2521 0.1546 99.00 0.1834 . . 132 . . 'X-RAY DIFFRACTION' . 4.6217 32.7956 2572 0.1847 98.00 0.2030 . . 136 . . # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.782286 _struct_ncs_oper.matrix[1][2] 0.018025 _struct_ncs_oper.matrix[1][3] -0.622659 _struct_ncs_oper.matrix[2][1] 0.045100 _struct_ncs_oper.matrix[2][2] -0.995319 _struct_ncs_oper.matrix[2][3] -0.085474 _struct_ncs_oper.matrix[3][1] -0.621285 _struct_ncs_oper.matrix[3][2] -0.094947 _struct_ncs_oper.matrix[3][3] 0.777811 _struct_ncs_oper.vector[1] -13.21360 _struct_ncs_oper.vector[2] 55.16570 _struct_ncs_oper.vector[3] -2.10779 # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 ? 1 2 ? 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.end_auth_comp_id 1 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 1 ;CHAIN A AND (RESSEQ 280:283 OR RESSEQ 286:289 OR RESSEQ 291:293 OR RESSEQ 297: 304 OR RESSEQ 306:334 OR RESSEQ 341:359 OR RESSEQ 375:397) ; ? ? 2 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 1 ;CHAIN B AND (RESSEQ 280:283 OR RESSEQ 286:289 OR RESSEQ 291:293 OR RESSEQ 297: 304 OR RESSEQ 306:334 OR RESSEQ 341:359 OR RESSEQ 375:397) ; ? ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _database_PDB_matrix.entry_id 2YMA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2YMA _struct.title 'X-ray structure of the Yos9 dimerization domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YMA _struct_keywords.pdbx_keywords 'CARBOHYDRATE BINDING PROTEIN' _struct_keywords.text ;CARBOHYDRATE BINDING PROTEIN, QUALITY CONTROL, ENDOPLASMIC RETICULUM-ASSOCIATED PROTEIN DEGRADATION, HRD COMPLEX, MISFOLDED PROTEINS, ENDOPLASMIC RETICULUM ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OS9_YEAST _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q99220 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YMA A 3 ? 161 ? Q99220 266 ? 424 ? 266 424 2 1 2YMA B 3 ? 161 ? Q99220 266 ? 424 ? 266 424 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YMA GLY A 1 ? UNP Q99220 ? ? 'expression tag' 264 1 1 2YMA SER A 2 ? UNP Q99220 ? ? 'expression tag' 265 2 2 2YMA GLY B 1 ? UNP Q99220 ? ? 'expression tag' 264 3 2 2YMA SER B 2 ? UNP Q99220 ? ? 'expression tag' 265 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1770 ? 1 MORE -7.3 ? 1 'SSA (A^2)' 14150 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 41 ? SER A 45 ? ASP A 304 SER A 308 5 ? 5 HELX_P HELX_P2 2 THR A 51 ? LEU A 68 ? THR A 314 LEU A 331 1 ? 18 HELX_P HELX_P3 3 SER B 7 ? LYS B 13 ? SER B 270 LYS B 276 1 ? 7 HELX_P HELX_P4 4 ASP B 41 ? SER B 45 ? ASP B 304 SER B 308 5 ? 5 HELX_P HELX_P5 5 THR B 51 ? LEU B 68 ? THR B 314 LEU B 331 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 5 ? BA ? 6 ? BB ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? parallel AB 4 5 ? parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? parallel BA 4 5 ? anti-parallel BA 5 6 ? anti-parallel BB 1 2 ? anti-parallel BB 2 3 ? anti-parallel BB 3 4 ? parallel BB 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TYR A 14 ? GLY A 20 ? TYR A 277 GLY A 283 AA 2 ILE A 23 ? PRO A 28 ? ILE A 286 PRO A 291 AA 3 LYS A 36 ? VAL A 39 ? LYS A 299 VAL A 302 AA 4 SER A 84 ? VAL A 92 ? SER A 347 VAL A 355 AA 5 PHE A 98 ? ILE A 106 ? PHE A 361 ILE A 369 AA 6 ALA A 112 ? ASN A 117 ? ALA A 375 ASN A 380 AB 1 TYR A 14 ? GLY A 20 ? TYR A 277 GLY A 283 AB 2 ILE A 23 ? PRO A 28 ? ILE A 286 PRO A 291 AB 3 LYS A 36 ? VAL A 39 ? LYS A 299 VAL A 302 AB 4 SER A 84 ? VAL A 92 ? SER A 347 VAL A 355 AB 5 PHE A 129 ? LYS A 133 ? PHE A 392 LYS A 396 BA 1 TYR B 14 ? GLY B 20 ? TYR B 277 GLY B 283 BA 2 ILE B 23 ? PRO B 28 ? ILE B 286 PRO B 291 BA 3 LYS B 36 ? VAL B 39 ? LYS B 299 VAL B 302 BA 4 SER B 84 ? VAL B 92 ? SER B 347 VAL B 355 BA 5 PHE B 98 ? ILE B 106 ? PHE B 361 ILE B 369 BA 6 ALA B 112 ? ASN B 117 ? ALA B 375 ASN B 380 BB 1 TYR B 14 ? GLY B 20 ? TYR B 277 GLY B 283 BB 2 ILE B 23 ? PRO B 28 ? ILE B 286 PRO B 291 BB 3 LYS B 36 ? VAL B 39 ? LYS B 299 VAL B 302 BB 4 SER B 84 ? VAL B 92 ? SER B 347 VAL B 355 BB 5 PHE B 129 ? LYS B 133 ? PHE B 392 LYS B 396 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 19 ? N LEU A 282 O ILE A 23 ? O ILE A 286 AA 2 3 N LEU A 26 ? N LEU A 289 O LYS A 36 ? O LYS A 299 AA 3 4 N LEU A 37 ? N LEU A 300 O GLU A 90 ? O GLU A 353 AA 4 5 O VAL A 91 ? O VAL A 354 N GLN A 99 ? N GLN A 362 AA 5 6 N ASN A 105 ? N ASN A 368 O GLU A 113 ? O GLU A 376 AB 1 2 N LEU A 19 ? N LEU A 282 O ILE A 23 ? O ILE A 286 AB 2 3 N LEU A 26 ? N LEU A 289 O LYS A 36 ? O LYS A 299 AB 3 4 N LEU A 37 ? N LEU A 300 O GLU A 90 ? O GLU A 353 AB 4 5 O VAL A 86 ? O VAL A 349 N LEU A 130 ? N LEU A 393 BA 1 2 N LEU B 19 ? N LEU B 282 O ILE B 23 ? O ILE B 286 BA 2 3 N LEU B 26 ? N LEU B 289 O LYS B 36 ? O LYS B 299 BA 3 4 N LEU B 37 ? N LEU B 300 O GLU B 90 ? O GLU B 353 BA 4 5 O VAL B 91 ? O VAL B 354 N GLN B 99 ? N GLN B 362 BA 5 6 N ASN B 105 ? N ASN B 368 O GLU B 113 ? O GLU B 376 BB 1 2 N LEU B 19 ? N LEU B 282 O ILE B 23 ? O ILE B 286 BB 2 3 N LEU B 26 ? N LEU B 289 O LYS B 36 ? O LYS B 299 BB 3 4 N LEU B 37 ? N LEU B 300 O GLU B 90 ? O GLU B 353 BB 4 5 O VAL B 86 ? O VAL B 349 N LEU B 130 ? N LEU B 393 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU B 336 ? ? -57.27 172.00 2 1 ASN B 338 ? ? -57.83 0.84 3 1 ASN B 371 ? ? -170.34 -163.01 4 1 GLN B 373 ? ? -122.16 -59.95 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -16.8717 48.9618 11.3076 0.3166 0.3248 0.7322 0.0011 0.0706 0.0206 0.0451 1.4510 2.7129 -1.3574 1.8645 -2.1332 0.0057 0.3622 0.7039 0.2738 0.0572 -0.6489 -0.6847 0.4108 -0.1241 'X-RAY DIFFRACTION' 2 ? refined -16.2186 36.0145 20.5204 0.2460 0.2938 0.3386 0.0490 0.0598 -0.0904 2.5011 3.7224 1.1477 -2.1112 0.2175 0.3829 -0.1294 0.0582 0.3901 0.0684 0.1688 -0.1634 0.1786 0.1780 -0.0598 'X-RAY DIFFRACTION' 3 ? refined -9.7772 9.5385 17.6040 0.2233 0.2293 0.3357 0.0441 -0.0402 -0.0285 1.4909 6.8702 3.6114 -1.8757 -1.0275 0.1908 -0.2635 0.0931 -0.0595 0.3615 0.1736 0.2965 0.2040 -0.1190 0.0612 'X-RAY DIFFRACTION' 4 ? refined -12.7765 19.4018 18.5776 0.4084 0.3882 0.2611 0.1002 0.0241 -0.0619 1.9923 5.6730 0.1963 -1.6900 0.1829 -0.7343 -0.1569 -0.2856 0.0387 0.5352 0.2245 0.2048 -0.1424 0.1508 -0.0593 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 265:310)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 311:399)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 266:343)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 344:397)' # _pdbx_entry_details.entry_id 2YMA _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'RESIDUAL GS AT THE N-TERMINUS AFTER TAG REMOVAL.' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 264 ? A GLY 1 2 1 Y 1 A HIS 400 ? A HIS 137 3 1 Y 1 A GLY 401 ? A GLY 138 4 1 Y 1 A GLU 402 ? A GLU 139 5 1 Y 1 A SER 403 ? A SER 140 6 1 Y 1 A THR 404 ? A THR 141 7 1 Y 1 A GLU 405 ? A GLU 142 8 1 Y 1 A LEU 406 ? A LEU 143 9 1 Y 1 A GLY 407 ? A GLY 144 10 1 Y 1 A GLN 408 ? A GLN 145 11 1 Y 1 A ILE 409 ? A ILE 146 12 1 Y 1 A THR 410 ? A THR 147 13 1 Y 1 A HIS 411 ? A HIS 148 14 1 Y 1 A SER 412 ? A SER 149 15 1 Y 1 A ASN 413 ? A ASN 150 16 1 Y 1 A LYS 414 ? A LYS 151 17 1 Y 1 A ALA 415 ? A ALA 152 18 1 Y 1 A ASP 416 ? A ASP 153 19 1 Y 1 A ILE 417 ? A ILE 154 20 1 Y 1 A ASN 418 ? A ASN 155 21 1 Y 1 A THR 419 ? A THR 156 22 1 Y 1 A ALA 420 ? A ALA 157 23 1 Y 1 A GLU 421 ? A GLU 158 24 1 Y 1 A ILE 422 ? A ILE 159 25 1 Y 1 A ARG 423 ? A ARG 160 26 1 Y 1 A SER 424 ? A SER 161 27 1 Y 1 B GLY 264 ? B GLY 1 28 1 Y 1 B SER 265 ? B SER 2 29 1 Y 1 B GLY 398 ? B GLY 135 30 1 Y 1 B ASP 399 ? B ASP 136 31 1 Y 1 B HIS 400 ? B HIS 137 32 1 Y 1 B GLY 401 ? B GLY 138 33 1 Y 1 B GLU 402 ? B GLU 139 34 1 Y 1 B SER 403 ? B SER 140 35 1 Y 1 B THR 404 ? B THR 141 36 1 Y 1 B GLU 405 ? B GLU 142 37 1 Y 1 B LEU 406 ? B LEU 143 38 1 Y 1 B GLY 407 ? B GLY 144 39 1 Y 1 B GLN 408 ? B GLN 145 40 1 Y 1 B ILE 409 ? B ILE 146 41 1 Y 1 B THR 410 ? B THR 147 42 1 Y 1 B HIS 411 ? B HIS 148 43 1 Y 1 B SER 412 ? B SER 149 44 1 Y 1 B ASN 413 ? B ASN 150 45 1 Y 1 B LYS 414 ? B LYS 151 46 1 Y 1 B ALA 415 ? B ALA 152 47 1 Y 1 B ASP 416 ? B ASP 153 48 1 Y 1 B ILE 417 ? B ILE 154 49 1 Y 1 B ASN 418 ? B ASN 155 50 1 Y 1 B THR 419 ? B THR 156 51 1 Y 1 B ALA 420 ? B ALA 157 52 1 Y 1 B GLU 421 ? B GLU 158 53 1 Y 1 B ILE 422 ? B ILE 159 54 1 Y 1 B ARG 423 ? B ARG 160 55 1 Y 1 B SER 424 ? B SER 161 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'SEMET DERIVATIVE REFINED MODEL SOLVED BY MAD' # _atom_sites.entry_id 2YMA _atom_sites.fract_transf_matrix[1][1] 0.006219 _atom_sites.fract_transf_matrix[1][2] 0.003590 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007181 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010240 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_