HEADER TRANSLATION 09-OCT-12 2YMJ TITLE SOLUTION STRUCTURE OF THE QUA1 DIMERIZATION DOMAIN OF PXQUA, THE TITLE 2 XENOPUS ORTHOLOG OF QUAKING. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN QUAKING-A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: QUA1 DOMAIN, RESIDUES 8-57; COMPND 5 SYNONYM: PXQUA, XQUA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: CONTAINS AN EXTRA GS CLONING ARTEFACT AT THE N- COMPND 9 TERMINUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAT10-QUA1 KEYWDS TRANSLATION, HAIRPIN, QKI, STAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.ALI,R.W.BROADHURST REVDAT 4 14-JUN-23 2YMJ 1 REMARK REVDAT 3 25-SEP-19 2YMJ 1 REMARK REVDAT 2 04-MAY-16 2YMJ 1 COMPND REMARK DBREF SEQADV REVDAT 2 2 1 SEQRES HELIX ATOM TER REVDAT 2 3 1 MASTER REVDAT 1 30-OCT-13 2YMJ 0 JRNL AUTH M.ALI,R.W.BROADHURST JRNL TITL SOLUTION STRUCTURE OF THE QUA1 DIMERIZATION DOMAIN OF PXQUA, JRNL TITL 2 THE XENOPUS ORTHOLOG OF QUAKING. JRNL REF PLOS ONE V. 8 57345 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23520467 JRNL DOI 10.1371/JOURNAL.PONE.0057345 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA/CNS REMARK 3 AUTHORS : NILGES ET AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 2YMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054399. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER / 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : [1H; 15N]-HSQC; 15N-TOCSY- HSQC; REMARK 210 15N-NOESY-HSQC; 13C- NOESY-HSQC; REMARK 210 HNCA; HN(CO)CA; HNCACB; CBCA(CO) REMARK 210 NH; HNCO; HBHA(CO)NH; HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS ANALYSIS REMARK 210 METHOD USED : ARIA VERSION 2.3 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY PLUS NO NOE REMARK 210 VIOLATIONS >0.5 ANGSTROMS AND NO REMARK 210 DIHEDRAL ANGLE VIOLATIONS > 5 REMARK 210 DEGREES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON A UNIFORMLY 15N AND 13C LABELLED PXQUA QUA1 REMARK 210 DOMAIN SAMPLE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 32 135.26 71.07 REMARK 500 1 LYS B 32 135.34 70.69 REMARK 500 2 LYS A 32 136.17 71.81 REMARK 500 2 PHE A 58 -151.48 -87.41 REMARK 500 2 SER A 59 60.61 25.86 REMARK 500 2 LYS B 32 135.84 71.79 REMARK 500 2 PHE B 58 -152.08 -87.55 REMARK 500 2 SER B 59 60.17 26.30 REMARK 500 3 PRO A 37 109.03 -59.50 REMARK 500 3 SER A 59 -43.71 -167.62 REMARK 500 3 THR A 63 -61.81 -90.60 REMARK 500 3 ASP A 79 -8.47 -59.20 REMARK 500 3 PRO B 37 109.19 -59.37 REMARK 500 3 SER B 59 -43.53 -167.64 REMARK 500 3 THR B 63 -62.06 -90.48 REMARK 500 3 ASP B 79 -8.89 -59.07 REMARK 500 4 SER A 59 -39.59 -172.62 REMARK 500 4 ASP A 79 0.78 -64.20 REMARK 500 4 SER B 59 -39.31 -172.75 REMARK 500 4 ASP B 79 0.68 -64.06 REMARK 500 5 LYS A 32 142.53 66.96 REMARK 500 5 SER A 59 53.90 -165.94 REMARK 500 5 THR A 63 -65.08 -90.16 REMARK 500 5 LYS B 32 142.24 67.12 REMARK 500 5 SER B 59 54.39 -165.62 REMARK 500 5 THR B 63 -64.99 -90.21 REMARK 500 6 LYS A 32 70.44 57.98 REMARK 500 6 SER A 59 72.39 -69.59 REMARK 500 6 THR A 63 -60.53 -91.79 REMARK 500 6 ASP A 79 -88.05 -78.79 REMARK 500 6 MET A 80 36.79 37.45 REMARK 500 6 LYS B 32 70.55 58.10 REMARK 500 6 SER B 59 72.33 -69.52 REMARK 500 6 THR B 63 -60.18 -91.83 REMARK 500 6 ASP B 79 -88.10 -78.98 REMARK 500 6 MET B 80 36.62 37.59 REMARK 500 7 PHE A 62 76.47 65.58 REMARK 500 7 ASP A 79 42.74 -76.68 REMARK 500 7 PHE B 62 76.58 65.56 REMARK 500 7 ASP B 79 43.23 -76.83 REMARK 500 8 SER A -1 -67.39 -148.19 REMARK 500 8 SER A 59 62.49 -65.74 REMARK 500 8 PHE A 62 91.27 62.35 REMARK 500 8 SER B -1 -67.75 -148.44 REMARK 500 8 SER B 59 62.16 -65.45 REMARK 500 8 PHE B 62 91.31 62.57 REMARK 500 9 SER A -1 -89.50 -86.01 REMARK 500 9 LYS A 32 132.24 64.01 REMARK 500 9 SER A 59 68.71 -67.96 REMARK 500 9 SER B -1 -89.34 -85.83 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18782 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONSTRUCT CORRESPONDS TO RESIDUES 32 TO 81 OF PXQUA, WITH REMARK 999 AN ADDITION GS CLONING ARTEFACT AT THE N-TERMINUS, PLUS A REMARK 999 C59S POINT MUTATION. DBREF 2YMJ A 32 81 UNP Q32NN2 QKIA_XENLA 8 57 DBREF 2YMJ B 32 81 UNP Q32NN2 QKIA_XENLA 8 57 SEQADV 2YMJ GLY A -2 UNP Q32NN2 EXPRESSION TAG SEQADV 2YMJ SER A -1 UNP Q32NN2 EXPRESSION TAG SEQADV 2YMJ SER A 59 UNP Q32NN2 CYS 35 ENGINEERED MUTATION SEQADV 2YMJ GLY B -2 UNP Q32NN2 EXPRESSION TAG SEQADV 2YMJ SER B -1 UNP Q32NN2 EXPRESSION TAG SEQADV 2YMJ SER B 59 UNP Q32NN2 CYS 35 ENGINEERED MUTATION SEQRES 1 A 52 GLY SER LYS GLU LYS PRO LYS PRO THR PRO ASP TYR LEU SEQRES 2 A 52 MET GLN LEU MET ASN ASP LYS LYS LEU MET SER SER LEU SEQRES 3 A 52 PRO ASN PHE SER GLY ILE PHE THR HIS LEU GLU ARG LEU SEQRES 4 A 52 LEU ASP GLU GLU ILE SER ARG VAL ARG LYS ASP MET TYR SEQRES 1 B 52 GLY SER LYS GLU LYS PRO LYS PRO THR PRO ASP TYR LEU SEQRES 2 B 52 MET GLN LEU MET ASN ASP LYS LYS LEU MET SER SER LEU SEQRES 3 B 52 PRO ASN PHE SER GLY ILE PHE THR HIS LEU GLU ARG LEU SEQRES 4 B 52 LEU ASP GLU GLU ILE SER ARG VAL ARG LYS ASP MET TYR HELIX 1 1 THR A 38 SER A 54 1 17 HELIX 2 2 ASN A 57 PHE A 62 1 6 HELIX 3 3 HIS A 64 ASP A 79 1 16 HELIX 4 4 THR B 38 SER B 54 1 17 HELIX 5 5 ASN B 57 PHE B 62 1 6 HELIX 6 6 HIS B 64 ASP B 79 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1