HEADER HYDROLASE 10-OCT-12 2YMP TITLE CHLOROACETIC ACID COMPLEX BOUND L-HALOACID DEHALOGENASE FROM A TITLE 2 RHODOBACTERACEAE FAMILY BACTERIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-HALOACID DEHALOGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTERACEAE; SOURCE 3 ORGANISM_TAXID: 31989; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIPL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.R.NOVAK,C.SAYER,M.N.ISUPOV,K.PASZKIEWICZ,D.GOTZ,A.M.SPRAGG, AUTHOR 2 J.A.LITTLECHILD REVDAT 2 20-DEC-23 2YMP 1 LINK REVDAT 1 01-MAY-13 2YMP 0 JRNL AUTH H.R.NOVAK,C.SAYER,M.N.ISUPOV,K.PASZKIEWICZ,D.GOTZ, JRNL AUTH 2 A.MEARNS SPRAGG,J.A.LITTLECHILD JRNL TITL MARINE RHODOBACTERACEAE L-HALOACID DEHALOGENASE CONTAINS A JRNL TITL 2 NOVEL HIS/GLU DYAD THAT COULD ACTIVATE THE CATALYTIC WATER. JRNL REF FEBS J. V. 280 1664 2013 JRNL REFN ISSN 1742-464X JRNL PMID 23384397 JRNL DOI 10.1111/FEBS.12177 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3466 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 1.14000 REMARK 3 B33 (A**2) : -1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.714 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3825 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5285 ; 1.469 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 5.486 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;32.039 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 621 ;13.648 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.368 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2948 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97780 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33846 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 42.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2YML REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.17500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 ARG A 11 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 PRO B 6 REMARK 465 ALA B 7 REMARK 465 ARG B 8 REMARK 465 PRO B 9 REMARK 465 SER B 10 REMARK 465 ARG B 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2051 O HOH B 2147 1.99 REMARK 500 O HOH A 2036 O HOH A 2093 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 17 C ASB A 18 N 0.292 REMARK 500 ASB B 18 C VAL B 19 N 0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 17 CA - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 19 -60.22 -103.33 REMARK 500 GLU A 21 -38.75 76.03 REMARK 500 ASP A 39 108.62 -164.77 REMARK 500 PRO A 158 36.52 -98.71 REMARK 500 PRO A 203 126.41 -37.60 REMARK 500 GLU A 212 -10.56 75.96 REMARK 500 VAL B 19 -63.26 -100.83 REMARK 500 GLU B 21 -39.92 78.78 REMARK 500 ASP B 39 105.65 -167.67 REMARK 500 PRO B 158 31.69 -95.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 17 ASB B 18 149.92 REMARK 500 PHE B 17 ASB B 18 144.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 17 -12.14 REMARK 500 PHE B 17 -13.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YML RELATED DB: PDB REMARK 900 NATIVE L-HALOACID DEHALOGENASE FROM A RHODOBACTERACEAE FAMILY REMARK 900 BACTERIUM REMARK 900 RELATED ID: 2YMM RELATED DB: PDB REMARK 900 SULFATE BOUND L-HALOACID DEHALOGENASE FROM A RHODOBACTERACEAE REMARK 900 FAMILY BACTERIUM REMARK 900 RELATED ID: 2YMQ RELATED DB: PDB REMARK 900 CHLOROPROPIONIC ACID COMPLEX BOUND L-HALOACID DEHALOGENASE FROM A REMARK 900 RHODOBACTERACEAE FAMILY BACTERIUM REMARK 900 RELATED ID: 2YN4 RELATED DB: PDB REMARK 900 L-2-CHLOROBUTRYIC ACID BOUND COMPLEX L-HALOACID DEHALOGENASE FROM A REMARK 900 RHODOBACTERACEAE FAMILY BACTERIUM REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE MATCHES TO GENBANK JX868516 DBREF 2YMP A 1 236 PDB 2YMP 2YMP 1 236 DBREF 2YMP B 1 236 PDB 2YMP 2YMP 1 236 SEQRES 1 A 236 MET THR PRO SER HIS PRO ALA ARG PRO SER ARG SER GLY SEQRES 2 A 236 ILE LEU VAL PHE ASB VAL ASN GLU THR LEU LEU ASP LEU SEQRES 3 A 236 THR SER LEU SER PRO LEU PHE GLU ARG VAL PHE GLY ASP SEQRES 4 A 236 ALA LYS VAL LEU ARG GLU TRP PHE PRO GLU LEU ILE LEU SEQRES 5 A 236 TYR SER GLN THR LEU THR LEU THR GLY LEU TYR ARG PRO SEQRES 6 A 236 PHE GLY GLU ILE ALA ALA ALA VAL PHE GLU MET VAL ALA SEQRES 7 A 236 ALA ASN HIS GLN ALA LYS VAL THR PRO ASP ASP ILE ALA SEQRES 8 A 236 GLU LEU LYS THR ARG LEU THR SER MET PRO ALA TYR PRO SEQRES 9 A 236 ASP VAL ALA PRO ALA LEU THR ARG LEU GLN ASP ALA GLY SEQRES 10 A 236 PHE ARG LEU VAL THR LEU THR ASN SER ALA PRO SER PRO SEQRES 11 A 236 ALA PRO SER PRO LEU GLU LYS ALA GLY ILE ALA SER PHE SEQRES 12 A 236 PHE GLU ALA HIS LEU THR VAL HIS SER SER GLN ARG PHE SEQRES 13 A 236 LYS PRO HIS PRO SER VAL TYR ASP SER THR ALA GLU THR SEQRES 14 A 236 LEU GLY ALA LYS PRO GLU GLU LEU CYS MET ILE ALA CYS SEQRES 15 A 236 HIS ILE TRP ASP THR ILE GLY ALA GLN ALA ARG GLY TRP SEQRES 16 A 236 ARG GLY GLY PHE VAL ALA ARG PRO HIS ASN THR PRO LEU SEQRES 17 A 236 THR LEU ALA GLU VAL PRO GLN PRO ASP PHE ILE GLY ARG SEQRES 18 A 236 ASP MET GLY GLU LEU ALA ASP GLN LEU ILE ALA SER LEU SEQRES 19 A 236 THR ALA SEQRES 1 B 236 MET THR PRO SER HIS PRO ALA ARG PRO SER ARG SER GLY SEQRES 2 B 236 ILE LEU VAL PHE ASB VAL ASN GLU THR LEU LEU ASP LEU SEQRES 3 B 236 THR SER LEU SER PRO LEU PHE GLU ARG VAL PHE GLY ASP SEQRES 4 B 236 ALA LYS VAL LEU ARG GLU TRP PHE PRO GLU LEU ILE LEU SEQRES 5 B 236 TYR SER GLN THR LEU THR LEU THR GLY LEU TYR ARG PRO SEQRES 6 B 236 PHE GLY GLU ILE ALA ALA ALA VAL PHE GLU MET VAL ALA SEQRES 7 B 236 ALA ASN HIS GLN ALA LYS VAL THR PRO ASP ASP ILE ALA SEQRES 8 B 236 GLU LEU LYS THR ARG LEU THR SER MET PRO ALA TYR PRO SEQRES 9 B 236 ASP VAL ALA PRO ALA LEU THR ARG LEU GLN ASP ALA GLY SEQRES 10 B 236 PHE ARG LEU VAL THR LEU THR ASN SER ALA PRO SER PRO SEQRES 11 B 236 ALA PRO SER PRO LEU GLU LYS ALA GLY ILE ALA SER PHE SEQRES 12 B 236 PHE GLU ALA HIS LEU THR VAL HIS SER SER GLN ARG PHE SEQRES 13 B 236 LYS PRO HIS PRO SER VAL TYR ASP SER THR ALA GLU THR SEQRES 14 B 236 LEU GLY ALA LYS PRO GLU GLU LEU CYS MET ILE ALA CYS SEQRES 15 B 236 HIS ILE TRP ASP THR ILE GLY ALA GLN ALA ARG GLY TRP SEQRES 16 B 236 ARG GLY GLY PHE VAL ALA ARG PRO HIS ASN THR PRO LEU SEQRES 17 B 236 THR LEU ALA GLU VAL PRO GLN PRO ASP PHE ILE GLY ARG SEQRES 18 B 236 ASP MET GLY GLU LEU ALA ASP GLN LEU ILE ALA SER LEU SEQRES 19 B 236 THR ALA MODRES 2YMP ASB A 18 ASP ASPARTIC ACID-4-CARBOXYMETHYL ESTER MODRES 2YMP ASB B 18 ASP ASPARTIC ACID-4-CARBOXYMETHYL ESTER HET ASB A 18 21 HET ASB B 18 22 HETNAM ASB ASPARTIC ACID-4-CARBOXYMETHYL ESTER FORMUL 1 ASB 2(C6 H9 N O6) FORMUL 3 HOH *379(H2 O) HELIX 1 1 ASP A 25 SER A 28 5 4 HELIX 2 2 LEU A 29 GLY A 38 1 10 HELIX 3 3 ASP A 39 LYS A 41 5 3 HELIX 4 4 VAL A 42 THR A 60 1 19 HELIX 5 5 PRO A 65 HIS A 81 1 17 HELIX 6 6 THR A 86 THR A 98 1 13 HELIX 7 7 ASP A 105 ALA A 116 1 12 HELIX 8 8 SER A 133 ALA A 138 1 6 HELIX 9 9 ILE A 140 PHE A 144 5 5 HELIX 10 10 HIS A 159 LEU A 170 1 12 HELIX 11 11 LYS A 173 GLU A 175 5 3 HELIX 12 12 HIS A 183 ARG A 193 1 11 HELIX 13 13 ASP A 222 SER A 233 1 12 HELIX 14 14 ASP B 25 SER B 28 5 4 HELIX 15 15 LEU B 29 GLY B 38 1 10 HELIX 16 16 ASP B 39 LYS B 41 5 3 HELIX 17 17 VAL B 42 THR B 60 1 19 HELIX 18 18 PRO B 65 HIS B 81 1 17 HELIX 19 19 THR B 86 THR B 98 1 13 HELIX 20 20 ASP B 105 ALA B 116 1 12 HELIX 21 21 SER B 133 ALA B 138 1 6 HELIX 22 22 ILE B 140 PHE B 144 5 5 HELIX 23 23 HIS B 159 LEU B 170 1 12 HELIX 24 24 LYS B 173 GLU B 175 5 3 HELIX 25 25 HIS B 183 ALA B 192 1 10 HELIX 26 26 ASP B 222 ALA B 236 1 15 SHEET 1 AA 6 ALA A 146 THR A 149 0 SHEET 2 AA 6 ARG A 119 THR A 124 1 O THR A 122 N LEU A 148 SHEET 3 AA 6 ILE A 14 PHE A 17 1 O LEU A 15 N VAL A 121 SHEET 4 AA 6 LEU A 177 ALA A 181 1 O CYS A 178 N VAL A 16 SHEET 5 AA 6 ARG A 196 VAL A 200 1 O ARG A 196 N MET A 179 SHEET 6 AA 6 PHE A 218 GLY A 220 1 O PHE A 218 N PHE A 199 SHEET 1 BA 6 ALA B 146 THR B 149 0 SHEET 2 BA 6 ARG B 119 THR B 124 1 O THR B 122 N LEU B 148 SHEET 3 BA 6 ILE B 14 PHE B 17 1 O LEU B 15 N VAL B 121 SHEET 4 BA 6 LEU B 177 ALA B 181 1 O CYS B 178 N VAL B 16 SHEET 5 BA 6 ARG B 196 VAL B 200 1 O ARG B 196 N MET B 179 SHEET 6 BA 6 PHE B 218 GLY B 220 1 O PHE B 218 N PHE B 199 LINK C PHE A 17 N ASB A 18 1555 1555 1.63 LINK C ASB A 18 N VAL A 19 1555 1555 1.45 LINK C PHE B 17 N ASB B 18 1555 1555 1.39 LINK C ASB B 18 N VAL B 19 1555 1555 1.50 CISPEP 1 ALA A 131 PRO A 132 0 -5.52 CISPEP 2 LYS A 157 PRO A 158 0 3.13 CISPEP 3 ALA B 131 PRO B 132 0 -4.85 CISPEP 4 LYS B 157 PRO B 158 0 0.19 CRYST1 42.350 68.420 157.960 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006331 0.00000 MTRIX1 1 -0.999740 0.020440 -0.010500 -18.51460 1 MTRIX2 1 0.022220 0.743240 -0.668660 14.75514 1 MTRIX3 1 -0.005860 -0.668720 -0.743490 37.85790 1