HEADER CHAPERONE 10-OCT-12 2YMS TITLE STRUCTURE AND ASSEMBLY OF A B-PROPELLER WITH NINE BLADES TITLE 2 AND A NEW CONSERVED REPETITIVE SEQUENCE MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FRAGMENTS OF BAMB FROM E. COLI, RESIDUES 62-191; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMB; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: FRAGMENTS OF BAMB FROM E. COLI, RESIDUES 113-186; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMB; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: FRAGMENTS OF BAMB FROM E. COLI, RESIDUES 248-322; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMB; COMPND 18 CHAIN: D; COMPND 19 FRAGMENT: FRAGMENTS OF BAMB FROM E. COLI, RESIDUES 249-320; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 511693; SOURCE 4 STRAIN: BL21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET22; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 511693; SOURCE 13 STRAIN: BL21; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET22; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 21 ORGANISM_TAXID: 511693; SOURCE 22 STRAIN: BL21; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_VECTOR: PET22; SOURCE 28 MOL_ID: 4; SOURCE 29 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 30 ORGANISM_TAXID: 511693; SOURCE 31 STRAIN: BL21; SOURCE 32 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 33 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 34 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 35 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 36 EXPRESSION_SYSTEM_VECTOR: PET22 KEYWDS CHAPERONE, PROPELLER STRUCTURE, ASSEMBLED FROM FRAGMENTS, NINE BLADES EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,R.ALBRECHT REVDAT 1 30-OCT-13 2YMS 0 JRNL AUTH R.ALBRECHT,K.ZETH JRNL TITL STRUCTURE AND ASSEMBLY OF A B-PROPELLER WITH NINE BLADES JRNL TITL 2 AND A NEW CONSERVED REPETITIVE SEQUENCE MOTIF JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.101 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.206 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.02 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.59 REMARK 3 NUMBER OF REFLECTIONS : 21018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1899 REMARK 3 R VALUE (WORKING SET) : 0.1870 REMARK 3 FREE R VALUE : 0.2395 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.2203 - 4.2019 0.97 2507 135 0.1615 0.1899 REMARK 3 2 4.2019 - 3.3354 0.99 2523 140 0.1604 0.2218 REMARK 3 3 3.3354 - 2.9138 1.00 2529 137 0.1853 0.2619 REMARK 3 4 2.9138 - 2.6474 1.00 2481 167 0.2043 0.2737 REMARK 3 5 2.6474 - 2.4577 0.99 2512 129 0.2310 0.3066 REMARK 3 6 2.4577 - 2.3128 0.99 2497 135 0.2439 0.2871 REMARK 3 7 2.3128 - 2.1970 1.00 2512 120 0.2504 0.3069 REMARK 3 8 2.1970 - 2.1013 0.95 2378 116 0.2626 0.3374 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.23 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2635 REMARK 3 ANGLE : 1.069 3597 REMARK 3 CHIRALITY : 0.076 433 REMARK 3 PLANARITY : 0.003 462 REMARK 3 DIHEDRAL : 14.665 907 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 62 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5527 0.3375 24.2616 REMARK 3 T TENSOR REMARK 3 T11: 0.4588 T22: 0.3111 REMARK 3 T33: 0.4496 T12: -0.0489 REMARK 3 T13: -0.0024 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 1.4039 L22: 0.5015 REMARK 3 L33: 0.6635 L12: 0.5220 REMARK 3 L13: 0.9849 L23: 0.3040 REMARK 3 S TENSOR REMARK 3 S11: -0.1901 S12: 0.2351 S13: -0.1785 REMARK 3 S21: -0.3472 S22: -0.1674 S23: 0.3253 REMARK 3 S31: -0.2093 S32: -0.1822 S33: -0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 80 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4397 2.0493 32.0664 REMARK 3 T TENSOR REMARK 3 T11: 0.3771 T22: 0.3151 REMARK 3 T33: 0.4319 T12: -0.0160 REMARK 3 T13: -0.0594 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.6308 L22: 0.6292 REMARK 3 L33: 0.5473 L12: 0.5746 REMARK 3 L13: 0.0667 L23: -0.2136 REMARK 3 S TENSOR REMARK 3 S11: -0.1262 S12: -0.1045 S13: 0.1666 REMARK 3 S21: 0.3560 S22: 0.0780 S23: -0.3423 REMARK 3 S31: -0.4331 S32: 0.2272 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 97 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8681 -7.4730 18.2800 REMARK 3 T TENSOR REMARK 3 T11: 0.4738 T22: 0.4134 REMARK 3 T33: 0.6172 T12: -0.0190 REMARK 3 T13: -0.0547 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.3303 L22: 0.1288 REMARK 3 L33: 0.8370 L12: -0.0209 REMARK 3 L13: 0.1308 L23: 0.0917 REMARK 3 S TENSOR REMARK 3 S11: -1.0000 S12: 0.4945 S13: 0.4507 REMARK 3 S21: -0.8117 S22: 0.6058 S23: 0.0968 REMARK 3 S31: 0.1810 S32: 0.2394 S33: -0.1146 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 116 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9820 -10.7163 23.0421 REMARK 3 T TENSOR REMARK 3 T11: 0.4828 T22: 0.3374 REMARK 3 T33: 0.3603 T12: -0.0385 REMARK 3 T13: -0.0227 T23: 0.0530 REMARK 3 L TENSOR REMARK 3 L11: 0.9351 L22: 0.7761 REMARK 3 L33: 0.4758 L12: 0.1703 REMARK 3 L13: 0.6175 L23: 0.4439 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: -0.1674 S13: 0.2641 REMARK 3 S21: 0.0999 S22: 0.0268 S23: -0.0285 REMARK 3 S31: -0.1622 S32: 0.2459 S33: 0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 136 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8625 -14.0718 19.2660 REMARK 3 T TENSOR REMARK 3 T11: 0.2998 T22: 0.2442 REMARK 3 T33: 0.2644 T12: -0.0032 REMARK 3 T13: -0.0038 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 1.9170 L22: 1.6408 REMARK 3 L33: 1.6986 L12: -0.0170 REMARK 3 L13: 0.1815 L23: -0.2638 REMARK 3 S TENSOR REMARK 3 S11: -0.0722 S12: 0.1878 S13: 0.1245 REMARK 3 S21: -0.1224 S22: 0.0854 S23: -0.0081 REMARK 3 S31: 0.0304 S32: -0.0127 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 176 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7823 -21.0248 13.9601 REMARK 3 T TENSOR REMARK 3 T11: 0.5191 T22: 0.4739 REMARK 3 T33: 0.4533 T12: 0.0120 REMARK 3 T13: -0.0269 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.5720 L22: 0.9711 REMARK 3 L33: 0.8535 L12: 0.6257 REMARK 3 L13: -0.3764 L23: -0.9431 REMARK 3 S TENSOR REMARK 3 S11: -0.3103 S12: 0.4316 S13: 0.1243 REMARK 3 S21: -0.4623 S22: 0.1209 S23: 0.2187 REMARK 3 S31: -0.3798 S32: -0.2496 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN C AND (RESID 229 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9702 -14.3275 11.8789 REMARK 3 T TENSOR REMARK 3 T11: 0.4852 T22: 0.5656 REMARK 3 T33: 0.4357 T12: 0.1037 REMARK 3 T13: 0.0010 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.1754 L22: 0.9371 REMARK 3 L33: 0.6132 L12: -1.3144 REMARK 3 L13: -0.0849 L23: 0.4541 REMARK 3 S TENSOR REMARK 3 S11: 0.4006 S12: 0.1880 S13: -0.5942 REMARK 3 S21: -0.4891 S22: -0.4468 S23: -0.1994 REMARK 3 S31: 0.1431 S32: 0.0190 S33: 0.0006 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN C AND (RESID 277 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7404 -7.4774 3.3701 REMARK 3 T TENSOR REMARK 3 T11: 0.6175 T22: 0.6128 REMARK 3 T33: 0.4479 T12: 0.1054 REMARK 3 T13: -0.0602 T23: -0.1227 REMARK 3 L TENSOR REMARK 3 L11: 1.0214 L22: 2.0287 REMARK 3 L33: 0.1807 L12: -1.3072 REMARK 3 L13: 0.4081 L23: -0.6744 REMARK 3 S TENSOR REMARK 3 S11: 0.5430 S12: 0.2444 S13: -0.3082 REMARK 3 S21: -0.7207 S22: -0.5224 S23: 0.1367 REMARK 3 S31: -0.0958 S32: 0.0707 S33: -0.0021 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 113 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1788 4.6971 7.5328 REMARK 3 T TENSOR REMARK 3 T11: 0.4258 T22: 0.6111 REMARK 3 T33: 0.3478 T12: 0.0606 REMARK 3 T13: 0.0612 T23: -0.1307 REMARK 3 L TENSOR REMARK 3 L11: 0.1452 L22: 0.2714 REMARK 3 L33: 0.1700 L12: 0.2018 REMARK 3 L13: 0.1544 L23: 0.2238 REMARK 3 S TENSOR REMARK 3 S11: 0.3006 S12: 0.6534 S13: 0.0674 REMARK 3 S21: -0.0079 S22: -0.0890 S23: -0.0682 REMARK 3 S31: 0.2762 S32: -0.7766 S33: 0.0018 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 126 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2355 8.2237 -1.0151 REMARK 3 T TENSOR REMARK 3 T11: 0.3484 T22: 0.6815 REMARK 3 T33: 0.4411 T12: 0.1274 REMARK 3 T13: -0.0456 T23: -0.0939 REMARK 3 L TENSOR REMARK 3 L11: 4.7463 L22: 1.6806 REMARK 3 L33: 0.8364 L12: 2.6339 REMARK 3 L13: -1.7837 L23: -0.8443 REMARK 3 S TENSOR REMARK 3 S11: 0.6597 S12: 0.3959 S13: 0.3268 REMARK 3 S21: -0.4861 S22: -0.4531 S23: 0.9182 REMARK 3 S31: -0.6631 S32: 0.4141 S33: -0.0475 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 136 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7117 7.6804 1.3431 REMARK 3 T TENSOR REMARK 3 T11: 0.5694 T22: 0.6483 REMARK 3 T33: 0.3915 T12: 0.0900 REMARK 3 T13: -0.1051 T23: -0.0965 REMARK 3 L TENSOR REMARK 3 L11: 0.8114 L22: 0.8240 REMARK 3 L33: 0.3775 L12: -0.8267 REMARK 3 L13: -0.3326 L23: 0.4329 REMARK 3 S TENSOR REMARK 3 S11: 0.2522 S12: 0.4506 S13: -0.2628 REMARK 3 S21: -0.9375 S22: -0.5503 S23: -0.0165 REMARK 3 S31: 0.1032 S32: 0.4473 S33: -0.0028 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESID 147 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5266 9.9367 3.3233 REMARK 3 T TENSOR REMARK 3 T11: 0.4316 T22: 1.0225 REMARK 3 T33: 0.1813 T12: 0.2293 REMARK 3 T13: 0.1018 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 1.2872 L22: 3.8162 REMARK 3 L33: 2.0050 L12: 0.5596 REMARK 3 L13: 0.6952 L23: 0.2327 REMARK 3 S TENSOR REMARK 3 S11: 0.8085 S12: 0.1684 S13: -0.5154 REMARK 3 S21: -0.9357 S22: -0.9137 S23: -0.8931 REMARK 3 S31: 2.2824 S32: 1.4274 S33: 0.4097 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESID 156 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0973 12.9707 12.2566 REMARK 3 T TENSOR REMARK 3 T11: 0.3249 T22: 0.5312 REMARK 3 T33: 0.2666 T12: -0.0056 REMARK 3 T13: 0.0496 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.2727 L22: 0.3914 REMARK 3 L33: 0.0540 L12: -0.0010 REMARK 3 L13: 0.1354 L23: 0.0029 REMARK 3 S TENSOR REMARK 3 S11: 0.1949 S12: 0.9932 S13: 0.2898 REMARK 3 S21: -0.4679 S22: -0.1861 S23: 0.2836 REMARK 3 S31: -0.0677 S32: -0.3298 S33: -0.0006 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESID 166 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7729 16.9900 2.9030 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 1.3289 REMARK 3 T33: 0.4775 T12: -0.0078 REMARK 3 T13: 0.2209 T23: 0.2188 REMARK 3 L TENSOR REMARK 3 L11: 6.2293 L22: 0.5684 REMARK 3 L33: 0.8731 L12: -0.5543 REMARK 3 L13: -1.8625 L23: 0.5230 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 1.2692 S13: 0.3459 REMARK 3 S21: -0.4274 S22: -0.6579 S23: -0.0466 REMARK 3 S31: -0.1541 S32: 0.2668 S33: -1.0902 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESID 171 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4646 16.4887 7.7712 REMARK 3 T TENSOR REMARK 3 T11: 0.3678 T22: 0.6435 REMARK 3 T33: 0.4381 T12: 0.1196 REMARK 3 T13: -0.0260 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.0045 L22: 0.0296 REMARK 3 L33: 0.1124 L12: 0.0319 REMARK 3 L13: -0.0405 L23: -0.0911 REMARK 3 S TENSOR REMARK 3 S11: 0.1587 S12: 0.2014 S13: -0.2922 REMARK 3 S21: -0.1791 S22: -0.4154 S23: 0.1110 REMARK 3 S31: -0.0842 S32: 0.4847 S33: -0.0012 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN B AND (RESID 181 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5546 22.1054 8.7714 REMARK 3 T TENSOR REMARK 3 T11: 0.5102 T22: 0.6088 REMARK 3 T33: 0.4851 T12: -0.0764 REMARK 3 T13: -0.1010 T23: 0.1746 REMARK 3 L TENSOR REMARK 3 L11: 1.0812 L22: 3.5202 REMARK 3 L33: 0.0288 L12: 1.9633 REMARK 3 L13: -0.1935 L23: -0.3260 REMARK 3 S TENSOR REMARK 3 S11: 0.4126 S12: 0.2093 S13: 0.2258 REMARK 3 S21: 0.6742 S22: 0.5383 S23: 0.8509 REMARK 3 S31: -1.0192 S32: -0.3479 S33: 0.1102 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN D AND (RESID 247 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5704 15.8115 15.7872 REMARK 3 T TENSOR REMARK 3 T11: 0.3657 T22: 0.4282 REMARK 3 T33: 0.3990 T12: -0.0060 REMARK 3 T13: 0.0234 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.8862 L22: 0.8387 REMARK 3 L33: 0.6194 L12: 0.2242 REMARK 3 L13: 0.3338 L23: 0.1096 REMARK 3 S TENSOR REMARK 3 S11: -0.3130 S12: 0.0827 S13: -0.0096 REMARK 3 S21: 0.0341 S22: 0.2379 S23: -0.0255 REMARK 3 S31: 0.0186 S32: -0.0807 S33: -0.0003 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN D AND (RESID 277 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7243 13.7226 23.4933 REMARK 3 T TENSOR REMARK 3 T11: 0.3967 T22: 0.3625 REMARK 3 T33: 0.4300 T12: -0.0311 REMARK 3 T13: 0.0766 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.9835 L22: 1.1546 REMARK 3 L33: 1.3359 L12: -1.1196 REMARK 3 L13: 1.2933 L23: -1.2549 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: 0.1623 S13: -0.0903 REMARK 3 S21: -0.2557 S22: -0.0229 S23: -0.0608 REMARK 3 S31: -0.0874 S32: 0.4640 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-13. REMARK 100 THE PDBE ID CODE IS EBI-54422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21022 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.10 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.6 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 2.1 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.40 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.1 REMARK 200 R MERGE FOR SHELL (I) : 0.45 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.28500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.28500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 100 REMARK 465 ASP A 101 REMARK 465 GLY A 102 REMARK 465 TRP A 103 REMARK 465 PHE A 104 REMARK 465 SER A 105 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN C 294 O HOH C 2009 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 112 -44.30 -150.12 REMARK 500 PRO A 190 106.41 -55.70 REMARK 500 GLU D 282 38.07 -96.07 REMARK 500 SER D 285 69.88 -100.93 REMARK 500 ASP D 292 -126.85 -120.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C1323 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 297 OH REMARK 620 2 HOH C2008 O 106.5 REMARK 620 3 ASP A 69 OD1 90.9 104.9 REMARK 620 4 ASP C 292 O 95.0 72.5 174.0 REMARK 620 5 ASP C 292 OD2 114.4 128.5 104.4 74.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C1323 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YMK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HEXAMERIC ANTI-MICROBIAL REMARK 900 PEPTIDE CHANNEL DERMCIDIN REMARK 900 RELATED ID: 2YMU RELATED DB: PDB REMARK 900 STRUCTURE OF A HIGHLY REPETITIVE PROPELLER STRUCTURE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN CRYSTAL ASSEMBLED FROM FRAGMENTS OF BAMB OF E. REMARK 999 COLI DBREF 2YMS A 62 191 UNP P77774 BAMB_ECOLI 62 191 DBREF 2YMS B 113 186 UNP P77774 BAMB_ECOLI 113 186 DBREF 2YMS C 229 322 UNP P77774 BAMB_ECOLI 248 322 DBREF 2YMS D 247 320 UNP P77774 BAMB_ECOLI 247 320 SEQRES 1 A 130 ASN LEU HIS PRO ALA LEU ALA ASP ASN VAL VAL TYR ALA SEQRES 2 A 130 ALA ASP ARG ALA GLY LEU VAL LYS ALA LEU ASN ALA ASP SEQRES 3 A 130 ASP GLY LYS GLU ILE TRP SER VAL SER LEU ALA GLU LYS SEQRES 4 A 130 ASP GLY TRP PHE SER LYS GLU PRO ALA LEU LEU SER GLY SEQRES 5 A 130 GLY VAL THR VAL SER GLY GLY HIS VAL TYR ILE GLY SER SEQRES 6 A 130 GLU LYS ALA GLN VAL TYR ALA LEU ASN THR SER ASP GLY SEQRES 7 A 130 THR VAL ALA TRP GLN THR LYS VAL ALA GLY GLU ALA LEU SEQRES 8 A 130 SER ARG PRO VAL VAL SER ASP GLY LEU VAL LEU ILE HIS SEQRES 9 A 130 THR SER ASN GLY GLN LEU GLN ALA LEU ASN GLU ALA ASP SEQRES 10 A 130 GLY ALA VAL LYS TRP THR VAL ASN LEU ASP MET PRO SER SEQRES 1 B 74 GLY GLY VAL THR VAL SER GLY GLY HIS VAL TYR ILE GLY SEQRES 2 B 74 SER GLU LYS ALA GLN VAL TYR ALA LEU ASN THR SER ASP SEQRES 3 B 74 GLY THR VAL ALA TRP GLN THR LYS VAL ALA GLY GLU ALA SEQRES 4 B 74 LEU SER ARG PRO VAL VAL SER ASP GLY LEU VAL LEU ILE SEQRES 5 B 74 HIS THR SER ASN GLY GLN LEU GLN ALA LEU ASN GLU ALA SEQRES 6 B 74 ASP GLY ALA VAL LYS TRP THR VAL ASN SEQRES 1 C 75 ASP THR THR PRO VAL VAL VAL ASN GLY VAL VAL PHE ALA SEQRES 2 C 75 LEU ALA TYR ASN GLY ASN LEU THR ALA LEU ASP LEU ARG SEQRES 3 C 75 SER GLY GLN ILE MET TRP LYS ARG GLU LEU GLY SER VAL SEQRES 4 C 75 ASN ASP PHE ILE VAL ASP GLY ASN ARG ILE TYR LEU VAL SEQRES 5 C 75 ASP GLN ASN ASP ARG VAL MET ALA LEU THR ILE ASP GLY SEQRES 6 C 75 GLY VAL THR LEU TRP THR GLN SER ASP LEU SEQRES 1 D 74 VAL ASP THR THR PRO VAL VAL VAL ASN GLY VAL VAL PHE SEQRES 2 D 74 ALA LEU ALA TYR ASN GLY ASN LEU THR ALA LEU ASP LEU SEQRES 3 D 74 ARG SER GLY GLN ILE MET TRP LYS ARG GLU LEU GLY SER SEQRES 4 D 74 VAL ASN ASP PHE ILE VAL ASP GLY ASN ARG ILE TYR LEU SEQRES 5 D 74 VAL ASP GLN ASN ASP ARG VAL MET ALA LEU THR ILE ASP SEQRES 6 D 74 GLY GLY VAL THR LEU TRP THR GLN SER HET NA C1323 1 HETNAM NA SODIUM ION FORMUL 5 NA NA 1+ FORMUL 6 HOH *93(H2 O) SHEET 1 AA 4 ALA A 66 ALA A 68 0 SHEET 2 AA 4 VAL A 71 ALA A 75 -1 O VAL A 71 N ALA A 68 SHEET 3 AA 4 LEU A 80 ASN A 85 -1 O LYS A 82 N ALA A 74 SHEET 4 AA 4 GLU A 91 SER A 96 -1 N ILE A 92 O ALA A 83 SHEET 1 AB 4 LEU A 111 SER A 118 0 SHEET 2 AB 4 HIS A 121 SER A 126 -1 O HIS A 121 N SER A 118 SHEET 3 AB 4 GLN A 130 ASN A 135 -1 O GLN A 130 N SER A 126 SHEET 4 AB 4 VAL A 141 LYS A 146 -1 N ALA A 142 O ALA A 133 SHEET 1 AC 4 VAL A 156 SER A 158 0 SHEET 2 AC 4 LEU A 161 HIS A 165 -1 O LEU A 161 N SER A 158 SHEET 3 AC 4 GLN A 170 ASN A 175 -1 O GLN A 172 N ILE A 164 SHEET 4 AC 4 VAL A 181 ASN A 186 -1 N LYS A 182 O ALA A 173 SHEET 1 BA 4 VAL B 115 SER B 118 0 SHEET 2 BA 4 HIS B 121 GLY B 125 -1 O HIS B 121 N SER B 118 SHEET 3 BA 4 GLN B 130 ASN B 135 -1 O TYR B 132 N ILE B 124 SHEET 4 BA 4 VAL B 141 LYS B 146 -1 N ALA B 142 O ALA B 133 SHEET 1 BB 4 VAL B 156 SER B 158 0 SHEET 2 BB 4 LEU B 161 HIS B 165 -1 O LEU B 161 N SER B 158 SHEET 3 BB 4 LEU B 171 ASN B 175 -1 O GLN B 172 N ILE B 164 SHEET 4 BB 4 VAL B 181 VAL B 185 -1 N LYS B 182 O ALA B 173 SHEET 1 CA 4 VAL C 233 VAL C 235 0 SHEET 2 CA 4 VAL C 238 LEU C 242 -1 O VAL C 238 N VAL C 235 SHEET 3 CA 4 ASN C 247 ASP C 271 -1 O THR C 268 N ALA C 241 SHEET 4 CA 4 ILE C 277 GLU C 282 -1 N MET C 278 O ALA C 269 SHEET 1 CB 4 VAL C 286 ASP C 292 0 SHEET 2 CB 4 ARG C 295 ASP C 300 -1 O ARG C 295 N ASP C 292 SHEET 3 CB 4 VAL C 305 THR C 309 -1 O MET C 306 N LEU C 298 SHEET 4 CB 4 THR C 315 GLN C 319 -1 N LEU C 316 O ALA C 307 SHEET 1 DA 4 VAL D 252 VAL D 254 0 SHEET 2 DA 4 VAL D 257 LEU D 261 -1 O VAL D 257 N VAL D 254 SHEET 3 DA 4 LEU D 267 ASP D 271 -1 O THR D 268 N ALA D 260 SHEET 4 DA 4 ILE D 277 ARG D 281 -1 N MET D 278 O ALA D 269 SHEET 1 DB 4 VAL D 286 VAL D 291 0 SHEET 2 DB 4 ARG D 295 ASP D 300 -1 O TYR D 297 N ILE D 290 SHEET 3 DB 4 VAL D 305 THR D 309 -1 O MET D 306 N LEU D 298 SHEET 4 DB 4 THR D 315 GLN D 319 -1 N LEU D 316 O ALA D 307 LINK NA NA C1323 O HOH C2008 1555 1555 2.97 LINK NA NA C1323 OD1 ASP A 69 1555 2556 3.08 LINK NA NA C1323 O ASP C 292 1555 1555 2.89 LINK NA NA C1323 OD2 ASP C 292 1555 1555 2.45 LINK NA NA C1323 OH TYR C 297 1555 1555 3.02 CISPEP 1 ALA A 98 GLU A 99 0 5.42 CISPEP 2 GLY A 114 VAL A 115 0 0.33 SITE 1 AC1 5 ASP A 69 ASP C 292 ARG C 295 TYR C 297 SITE 2 AC1 5 HOH C2008 CRYST1 88.570 83.450 57.370 90.00 118.94 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011291 0.000000 0.006243 0.00000 SCALE2 0.000000 0.011983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019918 0.00000