data_2YMT # _entry.id 2YMT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YMT pdb_00002ymt 10.2210/pdb2ymt/pdb PDBE EBI-54323 ? ? WWPDB D_1290054323 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-10 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2013-07-24 4 'Structure model' 1 3 2013-08-28 5 'Structure model' 1 4 2017-07-12 6 'Structure model' 1 5 2023-12-20 7 'Structure model' 1 6 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 6 'Structure model' Other 9 6 'Structure model' 'Refinement description' 10 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' diffrn_source 2 6 'Structure model' chem_comp_atom 3 6 'Structure model' chem_comp_bond 4 6 'Structure model' database_2 5 6 'Structure model' pdbx_database_status 6 6 'Structure model' pdbx_initial_refinement_model 7 6 'Structure model' struct_conn 8 6 'Structure model' struct_site 9 7 'Structure model' pdbx_entry_details 10 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_diffrn_source.type' 2 6 'Structure model' '_database_2.pdbx_DOI' 3 6 'Structure model' '_database_2.pdbx_database_accession' 4 6 'Structure model' '_pdbx_database_status.status_code_sf' 5 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YMT _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-10-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4BCX _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'GAMMA 2 ADAPTIN EAR DOMAIN CRYSTAL STRUCTURE' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Juergens, M.C.' 1 'Voros, J.' 2 'Rautureau, G.' 3 'Shepherd, D.' 4 'Pye, V.E.' 5 'Muldoon, J.' 6 'Johnson, C.M.' 7 'Ashcroft, A.' 8 'Freund, S.M.V.' 9 'Ferguson, N.' 10 # _citation.id primary _citation.title 'The Hepatitis B Virus Pres1 Domain Hijacks Host Trafficking Proteins by Motif Mimicry.' _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_volume 9 _citation.page_first 540 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1552-4450 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23851574 _citation.pdbx_database_id_DOI 10.1038/NCHEMBIO.1294 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jurgens, M.C.' 1 ? primary 'Voros, J.' 2 ? primary 'Rautureau, G.J.P.' 3 ? primary 'Shepherd, D.A.' 4 ? primary 'Pye, V.E.' 5 ? primary 'Muldoon, J.' 6 ? primary 'Johnson, C.M.' 7 ? primary 'Ashcroft, A.E.' 8 ? primary 'Freund, S.M.V.' 9 ? primary 'Ferguson, N.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'AP-1 COMPLEX SUBUNIT GAMMA-LIKE 2' 13762.746 1 ? ? 'EAR DOMAIN, RESIDUES 665-785' ? 2 polymer syn 'PHAGE DISPLAY DERIVED GAMMA 2 ADAPTIN EAR DOMAIN BINDING PEPTIDE' 957.019 1 ? ? ? ? 3 non-polymer syn 1,3-PROPANDIOL 76.094 1 ? ? ? ? 4 water nat water 18.015 125 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GAMMA2-ADAPTIN, G2AD, GAMMA 2 ADAPTIN EAR DOMAIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GGSAPIPDLKVFEREGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPI TQLFRILNPNKAPLRLKLRLTYDHFHQSVQEIFEVNNLPVESWQ ; ;GGSAPIPDLKVFEREGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPI TQLFRILNPNKAPLRLKLRLTYDHFHQSVQEIFEVNNLPVESWQ ; A ? 2 'polypeptide(L)' no yes 'GEEWGPWV(NH2)' GEEWGPWVX B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 1,3-PROPANDIOL PDO 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 SER n 1 4 ALA n 1 5 PRO n 1 6 ILE n 1 7 PRO n 1 8 ASP n 1 9 LEU n 1 10 LYS n 1 11 VAL n 1 12 PHE n 1 13 GLU n 1 14 ARG n 1 15 GLU n 1 16 GLY n 1 17 VAL n 1 18 GLN n 1 19 LEU n 1 20 ASN n 1 21 LEU n 1 22 SER n 1 23 PHE n 1 24 ILE n 1 25 ARG n 1 26 PRO n 1 27 PRO n 1 28 GLU n 1 29 ASN n 1 30 PRO n 1 31 ALA n 1 32 LEU n 1 33 LEU n 1 34 LEU n 1 35 ILE n 1 36 THR n 1 37 ILE n 1 38 THR n 1 39 ALA n 1 40 THR n 1 41 ASN n 1 42 PHE n 1 43 SER n 1 44 GLU n 1 45 GLY n 1 46 ASP n 1 47 VAL n 1 48 THR n 1 49 HIS n 1 50 PHE n 1 51 ILE n 1 52 CYS n 1 53 GLN n 1 54 ALA n 1 55 ALA n 1 56 VAL n 1 57 PRO n 1 58 LYS n 1 59 SER n 1 60 LEU n 1 61 GLN n 1 62 LEU n 1 63 GLN n 1 64 LEU n 1 65 GLN n 1 66 ALA n 1 67 PRO n 1 68 SER n 1 69 GLY n 1 70 ASN n 1 71 THR n 1 72 VAL n 1 73 PRO n 1 74 ALA n 1 75 ARG n 1 76 GLY n 1 77 GLY n 1 78 LEU n 1 79 PRO n 1 80 ILE n 1 81 THR n 1 82 GLN n 1 83 LEU n 1 84 PHE n 1 85 ARG n 1 86 ILE n 1 87 LEU n 1 88 ASN n 1 89 PRO n 1 90 ASN n 1 91 LYS n 1 92 ALA n 1 93 PRO n 1 94 LEU n 1 95 ARG n 1 96 LEU n 1 97 LYS n 1 98 LEU n 1 99 ARG n 1 100 LEU n 1 101 THR n 1 102 TYR n 1 103 ASP n 1 104 HIS n 1 105 PHE n 1 106 HIS n 1 107 GLN n 1 108 SER n 1 109 VAL n 1 110 GLN n 1 111 GLU n 1 112 ILE n 1 113 PHE n 1 114 GLU n 1 115 VAL n 1 116 ASN n 1 117 ASN n 1 118 LEU n 1 119 PRO n 1 120 VAL n 1 121 GLU n 1 122 SER n 1 123 TRP n 1 124 GLN n 2 1 GLY n 2 2 GLU n 2 3 GLU n 2 4 TRP n 2 5 GLY n 2 6 PRO n 2 7 TRP n 2 8 VAL n 2 9 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant C41 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'MODIFIED PRSETA' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'SYNTHETIC CONSTRUCT' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PDO non-polymer . 1,3-PROPANDIOL ? 'C3 H8 O2' 76.094 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 662 ? ? ? A . n A 1 2 GLY 2 663 ? ? ? A . n A 1 3 SER 3 664 664 SER SER A . n A 1 4 ALA 4 665 665 ALA ALA A . n A 1 5 PRO 5 666 666 PRO PRO A . n A 1 6 ILE 6 667 667 ILE ILE A . n A 1 7 PRO 7 668 668 PRO PRO A . n A 1 8 ASP 8 669 669 ASP ASP A . n A 1 9 LEU 9 670 670 LEU LEU A . n A 1 10 LYS 10 671 671 LYS LYS A . n A 1 11 VAL 11 672 672 VAL VAL A . n A 1 12 PHE 12 673 673 PHE PHE A . n A 1 13 GLU 13 674 674 GLU GLU A . n A 1 14 ARG 14 675 675 ARG ARG A . n A 1 15 GLU 15 676 676 GLU GLU A . n A 1 16 GLY 16 677 677 GLY GLY A . n A 1 17 VAL 17 678 678 VAL VAL A . n A 1 18 GLN 18 679 679 GLN GLN A . n A 1 19 LEU 19 680 680 LEU LEU A . n A 1 20 ASN 20 681 681 ASN ASN A . n A 1 21 LEU 21 682 682 LEU LEU A . n A 1 22 SER 22 683 683 SER SER A . n A 1 23 PHE 23 684 684 PHE PHE A . n A 1 24 ILE 24 685 685 ILE ILE A . n A 1 25 ARG 25 686 686 ARG ARG A . n A 1 26 PRO 26 687 687 PRO PRO A . n A 1 27 PRO 27 688 688 PRO PRO A . n A 1 28 GLU 28 689 689 GLU GLU A . n A 1 29 ASN 29 690 690 ASN ASN A . n A 1 30 PRO 30 691 691 PRO PRO A . n A 1 31 ALA 31 692 692 ALA ALA A . n A 1 32 LEU 32 693 693 LEU LEU A . n A 1 33 LEU 33 694 694 LEU LEU A . n A 1 34 LEU 34 695 695 LEU LEU A . n A 1 35 ILE 35 696 696 ILE ILE A . n A 1 36 THR 36 697 697 THR THR A . n A 1 37 ILE 37 698 698 ILE ILE A . n A 1 38 THR 38 699 699 THR THR A . n A 1 39 ALA 39 700 700 ALA ALA A . n A 1 40 THR 40 701 701 THR THR A . n A 1 41 ASN 41 702 702 ASN ASN A . n A 1 42 PHE 42 703 703 PHE PHE A . n A 1 43 SER 43 704 704 SER SER A . n A 1 44 GLU 44 705 705 GLU GLU A . n A 1 45 GLY 45 706 706 GLY GLY A . n A 1 46 ASP 46 707 707 ASP ASP A . n A 1 47 VAL 47 708 708 VAL VAL A . n A 1 48 THR 48 709 709 THR THR A . n A 1 49 HIS 49 710 710 HIS HIS A . n A 1 50 PHE 50 711 711 PHE PHE A . n A 1 51 ILE 51 712 712 ILE ILE A . n A 1 52 CYS 52 713 713 CYS CYS A . n A 1 53 GLN 53 714 714 GLN GLN A . n A 1 54 ALA 54 715 715 ALA ALA A . n A 1 55 ALA 55 716 716 ALA ALA A . n A 1 56 VAL 56 717 717 VAL VAL A . n A 1 57 PRO 57 718 718 PRO PRO A . n A 1 58 LYS 58 719 719 LYS LYS A . n A 1 59 SER 59 720 720 SER SER A . n A 1 60 LEU 60 721 721 LEU LEU A . n A 1 61 GLN 61 722 722 GLN GLN A . n A 1 62 LEU 62 723 723 LEU LEU A . n A 1 63 GLN 63 724 724 GLN GLN A . n A 1 64 LEU 64 725 725 LEU LEU A . n A 1 65 GLN 65 726 726 GLN GLN A . n A 1 66 ALA 66 727 727 ALA ALA A . n A 1 67 PRO 67 728 728 PRO PRO A . n A 1 68 SER 68 729 729 SER SER A . n A 1 69 GLY 69 730 730 GLY GLY A . n A 1 70 ASN 70 731 731 ASN ASN A . n A 1 71 THR 71 732 732 THR THR A . n A 1 72 VAL 72 733 733 VAL VAL A . n A 1 73 PRO 73 734 734 PRO PRO A . n A 1 74 ALA 74 735 735 ALA ALA A . n A 1 75 ARG 75 736 736 ARG ARG A . n A 1 76 GLY 76 737 737 GLY GLY A . n A 1 77 GLY 77 738 738 GLY GLY A . n A 1 78 LEU 78 739 739 LEU LEU A . n A 1 79 PRO 79 740 740 PRO PRO A . n A 1 80 ILE 80 741 741 ILE ILE A . n A 1 81 THR 81 742 742 THR THR A . n A 1 82 GLN 82 743 743 GLN GLN A . n A 1 83 LEU 83 744 744 LEU LEU A . n A 1 84 PHE 84 745 745 PHE PHE A . n A 1 85 ARG 85 746 746 ARG ARG A . n A 1 86 ILE 86 747 747 ILE ILE A . n A 1 87 LEU 87 748 748 LEU LEU A . n A 1 88 ASN 88 749 749 ASN ASN A . n A 1 89 PRO 89 750 750 PRO PRO A . n A 1 90 ASN 90 751 751 ASN ASN A . n A 1 91 LYS 91 752 752 LYS LYS A . n A 1 92 ALA 92 753 753 ALA ALA A . n A 1 93 PRO 93 754 754 PRO PRO A . n A 1 94 LEU 94 755 755 LEU LEU A . n A 1 95 ARG 95 756 756 ARG ARG A . n A 1 96 LEU 96 757 757 LEU LEU A . n A 1 97 LYS 97 758 758 LYS LYS A . n A 1 98 LEU 98 759 759 LEU LEU A . n A 1 99 ARG 99 760 760 ARG ARG A . n A 1 100 LEU 100 761 761 LEU LEU A . n A 1 101 THR 101 762 762 THR THR A . n A 1 102 TYR 102 763 763 TYR TYR A . n A 1 103 ASP 103 764 764 ASP ASP A . n A 1 104 HIS 104 765 765 HIS HIS A . n A 1 105 PHE 105 766 766 PHE PHE A . n A 1 106 HIS 106 767 767 HIS HIS A . n A 1 107 GLN 107 768 768 GLN GLN A . n A 1 108 SER 108 769 769 SER SER A . n A 1 109 VAL 109 770 770 VAL VAL A . n A 1 110 GLN 110 771 771 GLN GLN A . n A 1 111 GLU 111 772 772 GLU GLU A . n A 1 112 ILE 112 773 773 ILE ILE A . n A 1 113 PHE 113 774 774 PHE PHE A . n A 1 114 GLU 114 775 775 GLU GLU A . n A 1 115 VAL 115 776 776 VAL VAL A . n A 1 116 ASN 116 777 777 ASN ASN A . n A 1 117 ASN 117 778 778 ASN ASN A . n A 1 118 LEU 118 779 779 LEU LEU A . n A 1 119 PRO 119 780 780 PRO PRO A . n A 1 120 VAL 120 781 781 VAL VAL A . n A 1 121 GLU 121 782 782 GLU GLU A . n A 1 122 SER 122 783 783 SER SER A . n A 1 123 TRP 123 784 784 TRP TRP A . n A 1 124 GLN 124 785 785 GLN GLN A . n B 2 1 GLY 1 -2 ? ? ? B . n B 2 2 GLU 2 -1 ? ? ? B . n B 2 3 GLU 3 0 0 GLU GLU B . n B 2 4 TRP 4 1 1 TRP TRP B . n B 2 5 GLY 5 2 2 GLY GLY B . n B 2 6 PRO 6 3 3 PRO PRO B . n B 2 7 TRP 7 4 4 TRP TRP B . n B 2 8 VAL 8 5 5 VAL VAL B . n B 2 9 NH2 9 6 6 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PDO 1 1786 1786 PDO PDO A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . D 4 HOH 47 2047 2047 HOH HOH A . D 4 HOH 48 2048 2048 HOH HOH A . D 4 HOH 49 2049 2049 HOH HOH A . D 4 HOH 50 2050 2050 HOH HOH A . D 4 HOH 51 2051 2051 HOH HOH A . D 4 HOH 52 2052 2052 HOH HOH A . D 4 HOH 53 2053 2053 HOH HOH A . D 4 HOH 54 2054 2054 HOH HOH A . D 4 HOH 55 2055 2055 HOH HOH A . D 4 HOH 56 2056 2056 HOH HOH A . D 4 HOH 57 2057 2057 HOH HOH A . D 4 HOH 58 2058 2058 HOH HOH A . D 4 HOH 59 2059 2059 HOH HOH A . D 4 HOH 60 2060 2060 HOH HOH A . D 4 HOH 61 2061 2061 HOH HOH A . D 4 HOH 62 2062 2062 HOH HOH A . D 4 HOH 63 2063 2063 HOH HOH A . D 4 HOH 64 2064 2064 HOH HOH A . D 4 HOH 65 2065 2065 HOH HOH A . D 4 HOH 66 2066 2066 HOH HOH A . D 4 HOH 67 2067 2067 HOH HOH A . D 4 HOH 68 2068 2068 HOH HOH A . D 4 HOH 69 2069 2069 HOH HOH A . D 4 HOH 70 2070 2070 HOH HOH A . D 4 HOH 71 2071 2071 HOH HOH A . D 4 HOH 72 2072 2072 HOH HOH A . D 4 HOH 73 2073 2073 HOH HOH A . D 4 HOH 74 2074 2074 HOH HOH A . D 4 HOH 75 2075 2075 HOH HOH A . D 4 HOH 76 2076 2076 HOH HOH A . D 4 HOH 77 2077 2077 HOH HOH A . D 4 HOH 78 2078 2078 HOH HOH A . D 4 HOH 79 2079 2079 HOH HOH A . D 4 HOH 80 2080 2080 HOH HOH A . D 4 HOH 81 2081 2081 HOH HOH A . D 4 HOH 82 2082 2082 HOH HOH A . D 4 HOH 83 2083 2083 HOH HOH A . D 4 HOH 84 2084 2084 HOH HOH A . D 4 HOH 85 2085 2085 HOH HOH A . D 4 HOH 86 2086 2086 HOH HOH A . D 4 HOH 87 2087 2087 HOH HOH A . D 4 HOH 88 2088 2088 HOH HOH A . D 4 HOH 89 2089 2089 HOH HOH A . D 4 HOH 90 2090 2090 HOH HOH A . D 4 HOH 91 2091 2091 HOH HOH A . D 4 HOH 92 2092 2092 HOH HOH A . D 4 HOH 93 2093 2093 HOH HOH A . D 4 HOH 94 2094 2094 HOH HOH A . D 4 HOH 95 2095 2095 HOH HOH A . D 4 HOH 96 2096 2096 HOH HOH A . D 4 HOH 97 2097 2097 HOH HOH A . D 4 HOH 98 2098 2098 HOH HOH A . D 4 HOH 99 2099 2099 HOH HOH A . D 4 HOH 100 2100 2100 HOH HOH A . D 4 HOH 101 2101 2101 HOH HOH A . D 4 HOH 102 2102 2102 HOH HOH A . D 4 HOH 103 2103 2103 HOH HOH A . D 4 HOH 104 2104 2104 HOH HOH A . D 4 HOH 105 2105 2105 HOH HOH A . D 4 HOH 106 2106 2106 HOH HOH A . D 4 HOH 107 2107 2107 HOH HOH A . D 4 HOH 108 2108 2108 HOH HOH A . D 4 HOH 109 2109 2109 HOH HOH A . D 4 HOH 110 2110 2110 HOH HOH A . D 4 HOH 111 2111 2111 HOH HOH A . D 4 HOH 112 2112 2112 HOH HOH A . D 4 HOH 113 2113 2113 HOH HOH A . D 4 HOH 114 2114 2114 HOH HOH A . D 4 HOH 115 2115 2115 HOH HOH A . D 4 HOH 116 2116 2116 HOH HOH A . D 4 HOH 117 2117 2117 HOH HOH A . D 4 HOH 118 2118 2118 HOH HOH A . D 4 HOH 119 2119 2119 HOH HOH A . D 4 HOH 120 2120 2120 HOH HOH A . D 4 HOH 121 2121 2121 HOH HOH A . D 4 HOH 122 2122 2122 HOH HOH A . D 4 HOH 123 2123 2123 HOH HOH A . E 4 HOH 1 2001 2001 HOH HOH B . E 4 HOH 2 2002 2002 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _cell.entry_id 2YMT _cell.length_a 34.803 _cell.length_b 37.772 _cell.length_c 105.471 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YMT _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 2YMT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_percent_sol 51.42 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;100 MM MES/IMIDAZOLE PH 6.5, 0.02 M 1,6-HEXANEDIOL, 0.02 M 1-BUTANOL, 0.02 M (RS)-1,2- PROPANEDIOL, 0.02 M 2-PROPANOL, 0.02 M 1,4-BUTANEDIOL, 0.02 M 1,3-PROPANEDIOL, 10% (W/V) PEG 20000 AND 24% (V/V) PEG400 (USING A 2:1 RATIO OF PROTEIN TO MOTHER LIQUOR) ; # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU IMAGE PLATE' _diffrn_detector.pdbx_collection_date 2012-09-25 _diffrn_detector.details 'OSMIC BLUE CONFOCAL MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'OSMIC VARIMAX HR OPTICS' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YMT _reflns.observed_criterion_sigma_I 2.7 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.71 _reflns.d_resolution_high 1.80 _reflns.number_obs 13212 _reflns.number_all ? _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.60 _reflns.B_iso_Wilson_estimate 17.20 _reflns.pdbx_redundancy 6.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 8.0 _reflns_shell.Rmerge_I_obs 0.49 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.70 _reflns_shell.pdbx_redundancy 3.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YMT _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13166 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.708 _refine.ls_d_res_high 1.802 _refine.ls_percent_reflns_obs 97.74 _refine.ls_R_factor_obs 0.1876 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1850 _refine.ls_R_factor_R_free 0.2420 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 640 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 18.10 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0 _refine.solvent_model_param_bsol 0 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ;SAME KSOL AND BSOL ISSUE AS FOR THE 4BCX ENTRY. THEY DO NOT APPEAR IN THE SOFTWARE OUTPUT. PDB COMMENT WAS THAT THIS IS KNOWN AND NULL IS OK TO PUT INSTEAD OF N A AS THIS IS NOT ACCEPTED DURING DEPOSITION. ; _refine.pdbx_starting_model 'PDB ENTRY 4BCX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.19 _refine.pdbx_overall_phase_error 22.19 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1021 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 1151 _refine_hist.d_res_high 1.802 _refine_hist.d_res_low 30.708 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1078 'X-RAY DIFFRACTION' ? f_angle_d 1.098 ? ? 1479 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.295 ? ? 408 'X-RAY DIFFRACTION' ? f_chiral_restr 0.069 ? ? 168 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 195 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.8016 1.9407 2215 0.2100 89.00 0.2901 . . 121 . . 'X-RAY DIFFRACTION' . 1.9407 2.1360 2514 0.1793 100.00 0.2379 . . 123 . . 'X-RAY DIFFRACTION' . 2.1360 2.4450 2538 0.1826 100.00 0.2245 . . 126 . . 'X-RAY DIFFRACTION' . 2.4450 3.0799 2570 0.1983 100.00 0.2449 . . 122 . . 'X-RAY DIFFRACTION' . 3.0799 30.7122 2689 0.1763 100.00 0.2392 . . 148 . . # _database_PDB_matrix.entry_id 2YMT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2YMT _struct.title 'gamma 2 adaptin EAR domain crystal structure with phage peptide GEEWGPWV' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YMT _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP AP1G2_HUMAN 1 ? ? O75843 ? 2 PDB 2YMT 2 ? ? 2YMT ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YMT A 4 ? 124 ? O75843 665 ? 785 ? 665 785 2 2 2YMT B 1 ? 9 ? 2YMT -2 ? 6 ? -2 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YMT GLY A 1 ? UNP O75843 ? ? 'expression tag' 662 1 1 2YMT GLY A 2 ? UNP O75843 ? ? 'expression tag' 663 2 1 2YMT SER A 3 ? UNP O75843 ? ? 'expression tag' 664 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1310 ? 1 MORE -5.5 ? 1 'SSA (A^2)' 7120 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 119 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id TRP _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 123 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 780 _struct_conf.end_auth_comp_id TRP _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 784 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id VAL _struct_conn.ptnr1_label_seq_id 8 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id NH2 _struct_conn.ptnr2_label_seq_id 9 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id VAL _struct_conn.ptnr1_auth_seq_id 5 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id NH2 _struct_conn.ptnr2_auth_seq_id 6 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.327 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id NH2 _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id 9 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id VAL _pdbx_modification_feature.modified_residue_label_asym_id B _pdbx_modification_feature.modified_residue_label_seq_id 8 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id NH2 _pdbx_modification_feature.auth_asym_id B _pdbx_modification_feature.auth_seq_id 6 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id VAL _pdbx_modification_feature.modified_residue_auth_asym_id B _pdbx_modification_feature.modified_residue_auth_seq_id 5 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id VAL _pdbx_modification_feature.ref_pcm_id 2 _pdbx_modification_feature.ref_comp_id NH2 _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Terminal amidation' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 9 ? ARG A 14 ? LEU A 670 ARG A 675 AA 2 VAL A 17 ? ILE A 24 ? VAL A 678 ILE A 685 AA 3 LEU A 32 ? ASN A 41 ? LEU A 693 ASN A 702 AA 4 ILE A 80 ? LEU A 87 ? ILE A 741 LEU A 748 AA 5 GLN A 61 ? LEU A 64 ? GLN A 722 LEU A 725 AB 1 VAL A 47 ? ALA A 55 ? VAL A 708 ALA A 716 AB 2 LYS A 97 ? HIS A 104 ? LYS A 758 HIS A 765 AB 3 GLN A 107 ? GLU A 114 ? GLN A 768 GLU A 775 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ARG A 14 ? N ARG A 675 O VAL A 17 ? O VAL A 678 AA 2 3 N ILE A 24 ? N ILE A 685 O LEU A 34 ? O LEU A 695 AA 3 4 N ALA A 39 ? N ALA A 700 O ILE A 80 ? O ILE A 741 AA 4 5 N LEU A 87 ? N LEU A 748 O GLN A 61 ? O GLN A 722 AB 1 2 N ALA A 55 ? N ALA A 716 O LYS A 97 ? O LYS A 758 AB 2 3 N HIS A 104 ? N HIS A 765 O GLN A 107 ? O GLN A 768 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id PDO _struct_site.pdbx_auth_seq_id 1786 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE PDO A 1786' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id HOH _struct_site_gen.label_asym_id D _struct_site_gen.label_seq_id . _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id HOH _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 2123 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _pdbx_entry_details.entry_id 2YMT _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 2021 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2045 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 746 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 B _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2027 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 2.16 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TRP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 784 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -144.83 _pdbx_validate_torsion.psi -17.64 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -2.5745 _pdbx_refine_tls.origin_y -3.2126 _pdbx_refine_tls.origin_z 14.8178 _pdbx_refine_tls.T[1][1] 0.0829 _pdbx_refine_tls.T[2][2] 0.1103 _pdbx_refine_tls.T[3][3] 0.0787 _pdbx_refine_tls.T[1][2] 0.0039 _pdbx_refine_tls.T[1][3] -0.0017 _pdbx_refine_tls.T[2][3] -0.0092 _pdbx_refine_tls.L[1][1] 0.6237 _pdbx_refine_tls.L[2][2] 1.4811 _pdbx_refine_tls.L[3][3] 1.8991 _pdbx_refine_tls.L[1][2] -0.1680 _pdbx_refine_tls.L[1][3] -0.2690 _pdbx_refine_tls.L[2][3] 0.8746 _pdbx_refine_tls.S[1][1] -0.0177 _pdbx_refine_tls.S[1][2] 0.0783 _pdbx_refine_tls.S[1][3] 0.0144 _pdbx_refine_tls.S[2][1] -0.0387 _pdbx_refine_tls.S[2][2] -0.0851 _pdbx_refine_tls.S[2][3] 0.1094 _pdbx_refine_tls.S[3][1] -0.0329 _pdbx_refine_tls.S[3][2] -0.2522 _pdbx_refine_tls.S[3][3] 0.0625 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ALL # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2018 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.49 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 662 ? A GLY 1 2 1 Y 1 A GLY 663 ? A GLY 2 3 1 Y 1 B GLY -2 ? B GLY 1 4 1 Y 1 B GLU -1 ? B GLU 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 NH2 N N N N 230 NH2 HN1 H N N 231 NH2 HN2 H N N 232 PDO C1 C N N 233 PDO O1 O N N 234 PDO C2 C N N 235 PDO C3 C N N 236 PDO O3 O N N 237 PDO H11 H N N 238 PDO H12 H N N 239 PDO HO1 H N N 240 PDO H21 H N N 241 PDO H22 H N N 242 PDO H31 H N N 243 PDO H32 H N N 244 PDO HO3 H N N 245 PHE N N N N 246 PHE CA C N S 247 PHE C C N N 248 PHE O O N N 249 PHE CB C N N 250 PHE CG C Y N 251 PHE CD1 C Y N 252 PHE CD2 C Y N 253 PHE CE1 C Y N 254 PHE CE2 C Y N 255 PHE CZ C Y N 256 PHE OXT O N N 257 PHE H H N N 258 PHE H2 H N N 259 PHE HA H N N 260 PHE HB2 H N N 261 PHE HB3 H N N 262 PHE HD1 H N N 263 PHE HD2 H N N 264 PHE HE1 H N N 265 PHE HE2 H N N 266 PHE HZ H N N 267 PHE HXT H N N 268 PRO N N N N 269 PRO CA C N S 270 PRO C C N N 271 PRO O O N N 272 PRO CB C N N 273 PRO CG C N N 274 PRO CD C N N 275 PRO OXT O N N 276 PRO H H N N 277 PRO HA H N N 278 PRO HB2 H N N 279 PRO HB3 H N N 280 PRO HG2 H N N 281 PRO HG3 H N N 282 PRO HD2 H N N 283 PRO HD3 H N N 284 PRO HXT H N N 285 SER N N N N 286 SER CA C N S 287 SER C C N N 288 SER O O N N 289 SER CB C N N 290 SER OG O N N 291 SER OXT O N N 292 SER H H N N 293 SER H2 H N N 294 SER HA H N N 295 SER HB2 H N N 296 SER HB3 H N N 297 SER HG H N N 298 SER HXT H N N 299 THR N N N N 300 THR CA C N S 301 THR C C N N 302 THR O O N N 303 THR CB C N R 304 THR OG1 O N N 305 THR CG2 C N N 306 THR OXT O N N 307 THR H H N N 308 THR H2 H N N 309 THR HA H N N 310 THR HB H N N 311 THR HG1 H N N 312 THR HG21 H N N 313 THR HG22 H N N 314 THR HG23 H N N 315 THR HXT H N N 316 TRP N N N N 317 TRP CA C N S 318 TRP C C N N 319 TRP O O N N 320 TRP CB C N N 321 TRP CG C Y N 322 TRP CD1 C Y N 323 TRP CD2 C Y N 324 TRP NE1 N Y N 325 TRP CE2 C Y N 326 TRP CE3 C Y N 327 TRP CZ2 C Y N 328 TRP CZ3 C Y N 329 TRP CH2 C Y N 330 TRP OXT O N N 331 TRP H H N N 332 TRP H2 H N N 333 TRP HA H N N 334 TRP HB2 H N N 335 TRP HB3 H N N 336 TRP HD1 H N N 337 TRP HE1 H N N 338 TRP HE3 H N N 339 TRP HZ2 H N N 340 TRP HZ3 H N N 341 TRP HH2 H N N 342 TRP HXT H N N 343 TYR N N N N 344 TYR CA C N S 345 TYR C C N N 346 TYR O O N N 347 TYR CB C N N 348 TYR CG C Y N 349 TYR CD1 C Y N 350 TYR CD2 C Y N 351 TYR CE1 C Y N 352 TYR CE2 C Y N 353 TYR CZ C Y N 354 TYR OH O N N 355 TYR OXT O N N 356 TYR H H N N 357 TYR H2 H N N 358 TYR HA H N N 359 TYR HB2 H N N 360 TYR HB3 H N N 361 TYR HD1 H N N 362 TYR HD2 H N N 363 TYR HE1 H N N 364 TYR HE2 H N N 365 TYR HH H N N 366 TYR HXT H N N 367 VAL N N N N 368 VAL CA C N S 369 VAL C C N N 370 VAL O O N N 371 VAL CB C N N 372 VAL CG1 C N N 373 VAL CG2 C N N 374 VAL OXT O N N 375 VAL H H N N 376 VAL H2 H N N 377 VAL HA H N N 378 VAL HB H N N 379 VAL HG11 H N N 380 VAL HG12 H N N 381 VAL HG13 H N N 382 VAL HG21 H N N 383 VAL HG22 H N N 384 VAL HG23 H N N 385 VAL HXT H N N 386 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 NH2 N HN1 sing N N 218 NH2 N HN2 sing N N 219 PDO C1 O1 sing N N 220 PDO C1 C2 sing N N 221 PDO C1 H11 sing N N 222 PDO C1 H12 sing N N 223 PDO O1 HO1 sing N N 224 PDO C2 C3 sing N N 225 PDO C2 H21 sing N N 226 PDO C2 H22 sing N N 227 PDO C3 O3 sing N N 228 PDO C3 H31 sing N N 229 PDO C3 H32 sing N N 230 PDO O3 HO3 sing N N 231 PHE N CA sing N N 232 PHE N H sing N N 233 PHE N H2 sing N N 234 PHE CA C sing N N 235 PHE CA CB sing N N 236 PHE CA HA sing N N 237 PHE C O doub N N 238 PHE C OXT sing N N 239 PHE CB CG sing N N 240 PHE CB HB2 sing N N 241 PHE CB HB3 sing N N 242 PHE CG CD1 doub Y N 243 PHE CG CD2 sing Y N 244 PHE CD1 CE1 sing Y N 245 PHE CD1 HD1 sing N N 246 PHE CD2 CE2 doub Y N 247 PHE CD2 HD2 sing N N 248 PHE CE1 CZ doub Y N 249 PHE CE1 HE1 sing N N 250 PHE CE2 CZ sing Y N 251 PHE CE2 HE2 sing N N 252 PHE CZ HZ sing N N 253 PHE OXT HXT sing N N 254 PRO N CA sing N N 255 PRO N CD sing N N 256 PRO N H sing N N 257 PRO CA C sing N N 258 PRO CA CB sing N N 259 PRO CA HA sing N N 260 PRO C O doub N N 261 PRO C OXT sing N N 262 PRO CB CG sing N N 263 PRO CB HB2 sing N N 264 PRO CB HB3 sing N N 265 PRO CG CD sing N N 266 PRO CG HG2 sing N N 267 PRO CG HG3 sing N N 268 PRO CD HD2 sing N N 269 PRO CD HD3 sing N N 270 PRO OXT HXT sing N N 271 SER N CA sing N N 272 SER N H sing N N 273 SER N H2 sing N N 274 SER CA C sing N N 275 SER CA CB sing N N 276 SER CA HA sing N N 277 SER C O doub N N 278 SER C OXT sing N N 279 SER CB OG sing N N 280 SER CB HB2 sing N N 281 SER CB HB3 sing N N 282 SER OG HG sing N N 283 SER OXT HXT sing N N 284 THR N CA sing N N 285 THR N H sing N N 286 THR N H2 sing N N 287 THR CA C sing N N 288 THR CA CB sing N N 289 THR CA HA sing N N 290 THR C O doub N N 291 THR C OXT sing N N 292 THR CB OG1 sing N N 293 THR CB CG2 sing N N 294 THR CB HB sing N N 295 THR OG1 HG1 sing N N 296 THR CG2 HG21 sing N N 297 THR CG2 HG22 sing N N 298 THR CG2 HG23 sing N N 299 THR OXT HXT sing N N 300 TRP N CA sing N N 301 TRP N H sing N N 302 TRP N H2 sing N N 303 TRP CA C sing N N 304 TRP CA CB sing N N 305 TRP CA HA sing N N 306 TRP C O doub N N 307 TRP C OXT sing N N 308 TRP CB CG sing N N 309 TRP CB HB2 sing N N 310 TRP CB HB3 sing N N 311 TRP CG CD1 doub Y N 312 TRP CG CD2 sing Y N 313 TRP CD1 NE1 sing Y N 314 TRP CD1 HD1 sing N N 315 TRP CD2 CE2 doub Y N 316 TRP CD2 CE3 sing Y N 317 TRP NE1 CE2 sing Y N 318 TRP NE1 HE1 sing N N 319 TRP CE2 CZ2 sing Y N 320 TRP CE3 CZ3 doub Y N 321 TRP CE3 HE3 sing N N 322 TRP CZ2 CH2 doub Y N 323 TRP CZ2 HZ2 sing N N 324 TRP CZ3 CH2 sing Y N 325 TRP CZ3 HZ3 sing N N 326 TRP CH2 HH2 sing N N 327 TRP OXT HXT sing N N 328 TYR N CA sing N N 329 TYR N H sing N N 330 TYR N H2 sing N N 331 TYR CA C sing N N 332 TYR CA CB sing N N 333 TYR CA HA sing N N 334 TYR C O doub N N 335 TYR C OXT sing N N 336 TYR CB CG sing N N 337 TYR CB HB2 sing N N 338 TYR CB HB3 sing N N 339 TYR CG CD1 doub Y N 340 TYR CG CD2 sing Y N 341 TYR CD1 CE1 sing Y N 342 TYR CD1 HD1 sing N N 343 TYR CD2 CE2 doub Y N 344 TYR CD2 HD2 sing N N 345 TYR CE1 CZ doub Y N 346 TYR CE1 HE1 sing N N 347 TYR CE2 CZ sing Y N 348 TYR CE2 HE2 sing N N 349 TYR CZ OH sing N N 350 TYR OH HH sing N N 351 TYR OXT HXT sing N N 352 VAL N CA sing N N 353 VAL N H sing N N 354 VAL N H2 sing N N 355 VAL CA C sing N N 356 VAL CA CB sing N N 357 VAL CA HA sing N N 358 VAL C O doub N N 359 VAL C OXT sing N N 360 VAL CB CG1 sing N N 361 VAL CB CG2 sing N N 362 VAL CB HB sing N N 363 VAL CG1 HG11 sing N N 364 VAL CG1 HG12 sing N N 365 VAL CG1 HG13 sing N N 366 VAL CG2 HG21 sing N N 367 VAL CG2 HG22 sing N N 368 VAL CG2 HG23 sing N N 369 VAL OXT HXT sing N N 370 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4BCX _pdbx_initial_refinement_model.details 'PDB ENTRY 4BCX' # _atom_sites.entry_id 2YMT _atom_sites.fract_transf_matrix[1][1] 0.028733 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026475 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009481 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_