HEADER OXIDOREDUCTASE 10-OCT-12 2YMV TITLE STRUCTURE OF REDUCED M SMEGMATIS 5246, A HOMOLOGUE OF M.TUBERCULOSIS TITLE 2 ACG COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACG NITROREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 STRAIN: MC2-155; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PNIC28-BSA4 KEYWDS OXIDOREDUCTASE, DORMANCY, REDUCED FMN EXPDTA X-RAY DIFFRACTION AUTHOR F.-X.CHAUVIAC,M.BOMMER,H.DOBBEK,N.H.KEEP REVDAT 3 01-MAY-24 2YMV 1 REMARK LINK REVDAT 2 16-JAN-13 2YMV 1 JRNL REVDAT 1 21-NOV-12 2YMV 0 JRNL AUTH F.-X.CHAUVIAC,M.BOMMER,J.YAN,G.PARKIN,T.DAVITER,P.LOWDEN, JRNL AUTH 2 E.L.RAVEN,K.THALASSINOS,N.H.KEEP JRNL TITL CRYSTAL STRUCTURE OF REDUCED MSACG, A PUTATIVE JRNL TITL 2 NITROREDUCTASE FROM MYCOBACTERIUM SMEGMATIS AND A CLOSE JRNL TITL 3 HOMOLOGUE OF MYCOBACTERIUM TUBERCULOSIS ACG. JRNL REF J.BIOL.CHEM. V. 287 44372 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 23148223 JRNL DOI 10.1074/JBC.M112.406264 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 92766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5716 - 4.9611 0.93 2864 151 0.1603 0.1766 REMARK 3 2 4.9611 - 3.9419 0.98 2945 157 0.1124 0.1266 REMARK 3 3 3.9419 - 3.4448 0.98 2955 155 0.1222 0.1355 REMARK 3 4 3.4448 - 3.1304 0.99 2942 155 0.1301 0.1571 REMARK 3 5 3.1304 - 2.9063 0.99 2963 154 0.1297 0.1454 REMARK 3 6 2.9063 - 2.7352 0.99 2943 158 0.1171 0.1397 REMARK 3 7 2.7352 - 2.5983 0.99 2925 153 0.1060 0.1337 REMARK 3 8 2.5983 - 2.4853 0.99 2960 153 0.0939 0.1209 REMARK 3 9 2.4853 - 2.3897 0.99 2950 155 0.0948 0.1306 REMARK 3 10 2.3897 - 2.3073 0.99 2908 153 0.0891 0.1295 REMARK 3 11 2.3073 - 2.2352 1.00 2971 154 0.0878 0.1116 REMARK 3 12 2.2352 - 2.1713 1.00 2927 154 0.0898 0.1290 REMARK 3 13 2.1713 - 2.1142 0.99 2898 152 0.0948 0.1312 REMARK 3 14 2.1142 - 2.0626 0.99 2974 154 0.0976 0.1386 REMARK 3 15 2.0626 - 2.0157 1.00 2912 151 0.1007 0.1216 REMARK 3 16 2.0157 - 1.9728 1.00 2943 155 0.1018 0.1432 REMARK 3 17 1.9728 - 1.9334 1.00 2942 156 0.1047 0.1293 REMARK 3 18 1.9334 - 1.8969 1.00 2952 154 0.1050 0.1485 REMARK 3 19 1.8969 - 1.8630 1.00 2947 155 0.1067 0.1537 REMARK 3 20 1.8630 - 1.8315 1.00 2892 154 0.1163 0.1524 REMARK 3 21 1.8315 - 1.8019 1.00 2977 155 0.1228 0.1841 REMARK 3 22 1.8019 - 1.7742 1.00 2935 156 0.1367 0.1942 REMARK 3 23 1.7742 - 1.7481 1.00 2920 152 0.1383 0.1698 REMARK 3 24 1.7481 - 1.7235 1.00 2968 156 0.1413 0.2007 REMARK 3 25 1.7235 - 1.7002 1.00 2879 151 0.1489 0.1902 REMARK 3 26 1.7002 - 1.6781 1.00 2953 156 0.1551 0.1822 REMARK 3 27 1.6781 - 1.6572 1.00 2963 154 0.1686 0.2115 REMARK 3 28 1.6572 - 1.6372 1.00 2915 154 0.1719 0.2184 REMARK 3 29 1.6372 - 1.6182 1.00 2935 151 0.1828 0.1902 REMARK 3 30 1.6182 - 1.6000 1.00 2982 158 0.1949 0.2486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2759 REMARK 3 ANGLE : 1.721 3772 REMARK 3 CHIRALITY : 0.107 430 REMARK 3 PLANARITY : 0.010 497 REMARK 3 DIHEDRAL : 13.035 1051 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 1-2 AND 330 DISORDERED LOOP REMARK 3 292-294 IN MULTIPLE CONFORMATIONS REMARK 4 REMARK 4 2YMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9148 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92796 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 26.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SAD MODEL AT 2.4 A FROM ANOTHER DATASET REMARK 200 REMARK 200 REMARK: STRUCTURE ORIGINALY SOLVED USING AUTO-RICKSHAW AND 2.4 A REMARK 200 DATASET. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE/MES PH 6.5, REMARK 280 30%(V/V)PEG550MME, 25 MM NA FORMATE, 25 MM AM ACETATE, 25 MM NA REMARK 280 CITRATE, 25 MM NAK TARTRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2226 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 MSE A 2 REMARK 465 SER A 330 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2339 O HOH A 2407 1.97 REMARK 500 OE2 GLU A 162 O HOH A 2337 1.98 REMARK 500 O ARG A 292 O HOH A 2486 1.99 REMARK 500 NH1 ARG A 112 O HOH A 2184 2.00 REMARK 500 O HOH A 2487 O HOH A 2488 2.03 REMARK 500 O HOH A 2438 O HOH A 2439 2.04 REMARK 500 O HOH A 2405 O HOH A 2406 2.05 REMARK 500 O HOH A 2446 O HOH A 2447 2.05 REMARK 500 O HOH A 2040 O HOH A 2152 2.07 REMARK 500 CG ASP A 293 O HOH A 2495 2.09 REMARK 500 O HOH A 2372 O HOH A 2377 2.10 REMARK 500 O HOH A 2200 O HOH A 2458 2.11 REMARK 500 O HOH A 2048 O HOH A 2190 2.13 REMARK 500 OE2 GLU A 161 O HOH A 2332 2.15 REMARK 500 O HOH A 2448 O HOH A 2449 2.15 REMARK 500 O HOH A 2129 O HOH A 2485 2.16 REMARK 500 O HOH A 2182 O HOH A 2427 2.16 REMARK 500 O HOH A 2104 O HOH A 2272 2.17 REMARK 500 O HOH A 2322 O HOH A 2333 2.17 REMARK 500 O HOH A 2399 O HOH A 2400 2.17 REMARK 500 O HOH A 2189 O HOH A 2431 2.18 REMARK 500 O VAL A 211 O HOH A 2399 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2356 O HOH A 2414 2565 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 83 CG GLU A 83 CD 0.100 REMARK 500 GLU A 83 CD GLU A 83 OE1 0.076 REMARK 500 ARG A 174 CG ARG A 174 CD -0.224 REMARK 500 GLU A 194 CB GLU A 194 CG -0.162 REMARK 500 GLU A 194 CG GLU A 194 CD 0.095 REMARK 500 ARG A 318 CZ ARG A 318 NH1 0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 288 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 288 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 292 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 318 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 318 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 30 51.56 -90.57 REMARK 500 ASP A 133 32.98 -96.24 REMARK 500 ARG A 292 129.61 -19.00 REMARK 500 ARG A 292 -123.40 39.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2002 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A2081 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2111 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A2123 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A2158 DISTANCE = 5.82 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 FMN IS THE ONLY BIOLOGICAL RELAVENT HETROGEN IN THIS ENTRY. ALL REMARK 600 OTHER HETATOMS ARE COMPONENTS OF THE CRYSTALLISATION MIX AND REMARK 600 IN THE AUTHORS' OPINION, NO BIOLOGICAL ROLE. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FNR A 1330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 1332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1338 REMARK 999 REMARK 999 SEQUENCE REMARK 999 EXTRA SER ON THE N-TERMINUS FROM TEV CLEAVAGE SITE DBREF 2YMV A 2 330 UNP A0R2V4 A0R2V4_MYCS2 1 329 SEQADV 2YMV SER A 1 UNP A0R2V4 EXPRESSION TAG SEQRES 1 A 330 SER MSE SER ASP THR ARG LEU ASP VAL ALA THR LEU ALA SEQRES 2 A 330 ASN ALA VAL GLN LEU ALA ALA ARG ALA PRO SER LEU HIS SEQRES 3 A 330 ASN THR GLN PRO TRP ARG LEU ILE ALA GLU ASP GLY GLU SEQRES 4 A 330 LEU LYS LEU PHE LEU ASP PRO SER ARG VAL VAL ARG SER SEQRES 5 A 330 THR ASP ARG SER SER ARG GLU ALA VAL MSE SER CYS GLY SEQRES 6 A 330 VAL LEU LEU ASP HIS LEU ARG VAL ALA LEU ALA ALA ALA SEQRES 7 A 330 GLY TRP ASP THR GLU VAL GLN ARG PHE PRO ASN PRO ASN SEQRES 8 A 330 ASP ARG ASP HIS LEU ALA THR LEU SER PHE ARG PRO LEU SEQRES 9 A 330 GLN PHE VAL THR GLU GLY HIS ARG LYS ARG ALA ASP ALA SEQRES 10 A 330 ILE LEU ALA ARG ARG THR ASP ARG LEU PRO MSE SER ALA SEQRES 11 A 330 TYR VAL ASP TRP ASP ALA PHE GLU THR LEU LEU ARG ALA SEQRES 12 A 330 ARG LEU GLY ASP GLY PRO VAL HIS MSE ASP THR LEU GLY SEQRES 13 A 330 GLU ASP VAL ARG GLU GLU VAL ALA GLU ALA ALA ALA LEU SEQRES 14 A 330 THR GLU SER LEU ARG LEU TYR ASP ALA ALA TYR HIS SER SEQRES 15 A 330 GLU LEU ALA TRP TRP THR THR PRO PHE ALA THR GLU ASP SEQRES 16 A 330 GLY ILE PRO GLN THR ALA LEU ILE SER ALA GLU GLU SER SEQRES 17 A 330 GLU ARG VAL ALA VAL SER ARG ASP PHE PRO VAL ALA PRO SEQRES 18 A 330 HIS SER SER ARG ARG PRO ALA LEU ASN ASN ASP ALA ALA SEQRES 19 A 330 THR ILE VAL VAL LEU SER THR ASP GLY TYR SER ARG GLU SEQRES 20 A 330 ASP ALA LEU ASP ALA GLY GLU GLY LEU SER LYS VAL LEU SEQRES 21 A 330 LEU GLU CYS THR MSE SER GLY LEU ALA THR CYS PRO VAL SEQRES 22 A 330 THR HIS VAL THR GLU LEU HIS THR SER ARG ASP ILE ILE SEQRES 23 A 330 GLY ARG LEU ILE VAL ARG ASP ALA CYS PRO GLN VAL LEU SEQRES 24 A 330 VAL ARG ILE GLY LEU ALA PRO ALA LEU ASP GLU VAL PRO SEQRES 25 A 330 PRO PRO THR PRO ARG ARG PRO VAL ASP ALA PHE LEU GLU SEQRES 26 A 330 VAL ARG PRO ARG SER MODRES 2YMV MSE A 62 MET SELENOMETHIONINE MODRES 2YMV MSE A 128 MET SELENOMETHIONINE MODRES 2YMV MSE A 152 MET SELENOMETHIONINE MODRES 2YMV MSE A 265 MET SELENOMETHIONINE HET MSE A 62 8 HET MSE A 128 8 HET MSE A 152 13 HET MSE A 265 13 HET FNR A1330 31 HET FMT A1331 3 HET IMD A1332 5 HET FMT A1333 3 HET ACT A1334 4 HET FMT A1335 3 HET ACT A1336 4 HET PGE A1337 10 HET PGE A1338 10 HETNAM MSE SELENOMETHIONINE HETNAM FNR 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H- HETNAM 2 FNR BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D- HETNAM 3 FNR RIBITOL HETNAM FMT FORMIC ACID HETNAM IMD IMIDAZOLE HETNAM ACT ACETATE ION HETNAM PGE TRIETHYLENE GLYCOL HETSYN FNR TWO ELECTRON REDUCED FLAVIN MONONUCLEOTIDE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 FNR C17 H23 N4 O9 P FORMUL 3 FMT 3(C H2 O2) FORMUL 4 IMD C3 H5 N2 1+ FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 9 PGE 2(C6 H14 O4) FORMUL 11 HOH *518(H2 O) HELIX 1 1 ASP A 8 ALA A 20 1 13 HELIX 2 2 SER A 24 THR A 28 5 5 HELIX 3 3 PRO A 46 VAL A 49 5 4 HELIX 4 4 ASP A 54 SER A 56 5 3 HELIX 5 5 SER A 57 ALA A 78 1 22 HELIX 6 6 THR A 108 ARG A 121 1 14 HELIX 7 7 ASP A 133 GLY A 146 1 14 HELIX 8 8 GLY A 156 ASP A 158 5 3 HELIX 9 9 VAL A 159 ARG A 174 1 16 HELIX 10 10 ASP A 177 TRP A 187 1 11 HELIX 11 11 PRO A 198 LEU A 202 5 5 HELIX 12 12 SER A 204 GLU A 209 1 6 HELIX 13 13 SER A 245 SER A 266 1 22 HELIX 14 14 THR A 274 GLU A 278 5 5 HELIX 15 15 LEU A 279 ARG A 288 1 10 HELIX 16 16 PRO A 319 PHE A 323 1 5 SHEET 1 AA 5 TRP A 80 ARG A 86 0 SHEET 2 AA 5 HIS A 95 PRO A 103 -1 O THR A 98 N GLN A 85 SHEET 3 AA 5 GLU A 39 LEU A 44 -1 O LEU A 40 N LEU A 99 SHEET 4 AA 5 TRP A 31 GLU A 36 -1 O ARG A 32 N PHE A 43 SHEET 5 AA 5 LEU A 324 VAL A 326 1 O GLU A 325 N ALA A 35 SHEET 1 AB 4 HIS A 151 THR A 154 0 SHEET 2 AB 4 THR A 235 THR A 241 -1 O VAL A 238 N ASP A 153 SHEET 3 AB 4 CYS A 295 GLY A 303 -1 O CYS A 295 N THR A 241 SHEET 4 AB 4 ALA A 269 VAL A 273 -1 O ALA A 269 N GLY A 303 LINK C VAL A 61 N MSE A 62 1555 1555 1.32 LINK C MSE A 62 N SER A 63 1555 1555 1.32 LINK C PRO A 127 N MSE A 128 1555 1555 1.32 LINK C MSE A 128 N SER A 129 1555 1555 1.32 LINK C HIS A 151 N MSE A 152 1555 1555 1.32 LINK C MSE A 152 N ASP A 153 1555 1555 1.33 LINK C THR A 264 N MSE A 265 1555 1555 1.32 LINK C MSE A 265 N SER A 266 1555 1555 1.33 CISPEP 1 GLY A 148 PRO A 149 0 9.78 SITE 1 AC1 24 PRO A 23 SER A 24 LEU A 25 ASN A 27 SITE 2 AC1 24 GLU A 59 ARG A 121 ARG A 122 THR A 123 SITE 3 AC1 24 ARG A 125 ILE A 197 ARG A 215 PHE A 217 SITE 4 AC1 24 CYS A 271 PRO A 272 VAL A 273 THR A 274 SITE 5 AC1 24 THR A 315 ARG A 317 HOH A2037 HOH A2041 SITE 6 AC1 24 HOH A2258 HOH A2262 HOH A2410 HOH A2506 SITE 1 AC2 3 GLN A 17 HOH A2020 HOH A2512 SITE 1 AC3 4 TRP A 186 THR A 189 ASP A 195 HOH A2164 SITE 1 AC4 3 ARG A 72 ARG A 86 HOH A2193 SITE 1 AC5 5 ARG A 55 ARG A 283 HOH A2139 HOH A2447 SITE 2 AC5 5 HOH A2513 SITE 1 AC6 5 ASP A 147 HIS A 151 PRO A 190 ALA A 192 SITE 2 AC6 5 HOH A2298 SITE 1 AC7 4 ARG A 283 ASP A 284 ASP A 293 ALA A 294 SITE 1 AC8 4 GLU A 109 LYS A 113 MSE A 265 HOH A2516 SITE 1 AC9 4 ALA A 78 TRP A 80 GLN A 105 HOH A2517 CRYST1 167.799 167.799 43.980 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005960 0.003441 0.000000 0.00000 SCALE2 0.000000 0.006881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022738 0.00000