HEADER SUGAR BINDING PROTEIN 11-OCT-12 2YMZ TITLE CRYSTAL STRUCTURE OF CHICKEN GALECTIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN 2; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 ORGAN: KIDNEY (EMBRYO); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15(PREP4); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PQE60 KEYWDS SUGAR BINDING PROTEIN, CARBOHYDRATE RECOGNITION EXPDTA X-RAY DIFFRACTION AUTHOR I.S.FERNANDEZ,F.M.RUIZ,D.SOLIS,H.-J.GABIUS,A.ROMERO REVDAT 4 20-DEC-23 2YMZ 1 HETSYN REVDAT 3 29-JUL-20 2YMZ 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 11-SEP-13 2YMZ 1 JRNL REVDAT 1 28-AUG-13 2YMZ 0 JRNL AUTH F.M.RUIZ,I.S.FERNANDEZ,L.LOPEZ-MERINO,L.LAGARTERA,H.KALTNER, JRNL AUTH 2 M.MENENDEZ,S.ANDRE,D.SOLIS,H.-J.GABIUS,A.ROMERO JRNL TITL FINE-TUNING OF PROTOTYPE CHICKEN GALECTINS: STRUCTURE OF JRNL TITL 2 CG-2 AND STRUCTURE-ACTIVITY CORRELATIONS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1665 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23999290 JRNL DOI 10.1107/S0907444913011773 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 85819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4511 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5458 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 280 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6318 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 507 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.436 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6587 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8868 ; 2.171 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 792 ; 7.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 332 ;32.521 ;24.518 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1171 ;14.183 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.521 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 928 ; 0.181 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5001 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90331 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 43.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1QMJ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 1% B REMARK 280 -MERCAPTOETHANOL AT PH 4.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.92650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.82850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.82850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.92650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 2009 O HOH C 2092 1.99 REMARK 500 O HOH F 2013 O HOH F 2016 2.07 REMARK 500 O HOH D 2097 O HOH E 2052 2.08 REMARK 500 NH2 ARG A 3 O HOH A 2003 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2065 O HOH C 2055 4455 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 61 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP B 91 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 99 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG C 108 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 3 109.53 -56.09 REMARK 500 ASP A 11 58.48 -142.28 REMARK 500 GLN A 66 -159.36 -92.93 REMARK 500 LEU A 89 60.08 -111.85 REMARK 500 GLN B 66 -150.90 -93.51 REMARK 500 ASN B 75 62.51 -106.30 REMARK 500 ALA C 28 130.89 -39.50 REMARK 500 LYS D 38 -179.52 -172.61 REMARK 500 SER D 62 61.62 33.71 REMARK 500 GLN D 66 -149.93 -94.45 REMARK 500 PHE D 74 -110.57 57.06 REMARK 500 ASN D 75 32.30 73.63 REMARK 500 GLN E 66 -145.20 -110.86 REMARK 500 HIS E 73 95.82 -68.38 REMARK 500 ASN E 75 46.60 -105.22 REMARK 500 LEU E 89 58.52 -107.38 REMARK 500 SER F 62 54.92 38.48 REMARK 500 GLN F 66 -150.17 -90.67 REMARK 500 ASN F 75 60.01 -117.33 REMARK 500 LEU F 89 63.65 -114.62 REMARK 500 REMARK 500 REMARK: NULL DBREF 2YMZ A 4 131 UNP E1C0Z4 E1C0Z4_CHICK 1 129 DBREF 2YMZ B 4 131 UNP E1C0Z4 E1C0Z4_CHICK 1 129 DBREF 2YMZ C 4 131 UNP E1C0Z4 E1C0Z4_CHICK 1 129 DBREF 2YMZ D 4 131 UNP E1C0Z4 E1C0Z4_CHICK 1 129 DBREF 2YMZ E 4 131 UNP E1C0Z4 E1C0Z4_CHICK 1 129 DBREF 2YMZ F 4 131 UNP E1C0Z4 E1C0Z4_CHICK 1 129 SEQADV 2YMZ ALA A 2 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ ARG A 3 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ A UNP E1C0Z4 TYR 81 DELETION SEQADV 2YMZ ALA B 2 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ ARG B 3 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ B UNP E1C0Z4 TYR 81 DELETION SEQADV 2YMZ ALA C 2 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ ARG C 3 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ C UNP E1C0Z4 TYR 81 DELETION SEQADV 2YMZ ALA D 2 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ ARG D 3 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ D UNP E1C0Z4 TYR 81 DELETION SEQADV 2YMZ ALA E 2 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ ARG E 3 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ E UNP E1C0Z4 TYR 81 DELETION SEQADV 2YMZ ALA F 2 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ ARG F 3 UNP E1C0Z4 EXPRESSION TAG SEQADV 2YMZ F UNP E1C0Z4 TYR 81 DELETION SEQRES 1 A 130 ALA ARG MET PHE GLU MET PHE ASN LEU ASP TRP LYS SER SEQRES 2 A 130 GLY GLY THR MET LYS ILE LYS GLY HIS ILE SER GLU ASP SEQRES 3 A 130 ALA GLU SER PHE ALA ILE ASN LEU GLY CYS LYS SER SER SEQRES 4 A 130 ASP LEU ALA LEU HIS PHE ASN PRO ARG PHE ASN GLU SER SEQRES 5 A 130 VAL ILE VAL CYS ASN SER LEU CYS SER ASP ASN TRP GLN SEQRES 6 A 130 GLN GLU GLN ARG ASP LYS HIS PHE ASN PHE TYR LYS GLY SEQRES 7 A 130 SER THR VAL LYS ILE ILE VAL GLU PHE LEU GLY ASP LYS SEQRES 8 A 130 PHE LEU VAL LYS LEU PRO ASP GLY HIS GLU VAL GLU PHE SEQRES 9 A 130 PRO ASN ARG HIS GLY TYR ASP LYS ILE SER TYR LEU ASN SEQRES 10 A 130 ILE LEU GLY GLY PHE LYS VAL THR SER PHE LYS VAL GLU SEQRES 1 B 130 ALA ARG MET PHE GLU MET PHE ASN LEU ASP TRP LYS SER SEQRES 2 B 130 GLY GLY THR MET LYS ILE LYS GLY HIS ILE SER GLU ASP SEQRES 3 B 130 ALA GLU SER PHE ALA ILE ASN LEU GLY CYS LYS SER SER SEQRES 4 B 130 ASP LEU ALA LEU HIS PHE ASN PRO ARG PHE ASN GLU SER SEQRES 5 B 130 VAL ILE VAL CYS ASN SER LEU CYS SER ASP ASN TRP GLN SEQRES 6 B 130 GLN GLU GLN ARG ASP LYS HIS PHE ASN PHE TYR LYS GLY SEQRES 7 B 130 SER THR VAL LYS ILE ILE VAL GLU PHE LEU GLY ASP LYS SEQRES 8 B 130 PHE LEU VAL LYS LEU PRO ASP GLY HIS GLU VAL GLU PHE SEQRES 9 B 130 PRO ASN ARG HIS GLY TYR ASP LYS ILE SER TYR LEU ASN SEQRES 10 B 130 ILE LEU GLY GLY PHE LYS VAL THR SER PHE LYS VAL GLU SEQRES 1 C 130 ALA ARG MET PHE GLU MET PHE ASN LEU ASP TRP LYS SER SEQRES 2 C 130 GLY GLY THR MET LYS ILE LYS GLY HIS ILE SER GLU ASP SEQRES 3 C 130 ALA GLU SER PHE ALA ILE ASN LEU GLY CYS LYS SER SER SEQRES 4 C 130 ASP LEU ALA LEU HIS PHE ASN PRO ARG PHE ASN GLU SER SEQRES 5 C 130 VAL ILE VAL CYS ASN SER LEU CYS SER ASP ASN TRP GLN SEQRES 6 C 130 GLN GLU GLN ARG ASP LYS HIS PHE ASN PHE TYR LYS GLY SEQRES 7 C 130 SER THR VAL LYS ILE ILE VAL GLU PHE LEU GLY ASP LYS SEQRES 8 C 130 PHE LEU VAL LYS LEU PRO ASP GLY HIS GLU VAL GLU PHE SEQRES 9 C 130 PRO ASN ARG HIS GLY TYR ASP LYS ILE SER TYR LEU ASN SEQRES 10 C 130 ILE LEU GLY GLY PHE LYS VAL THR SER PHE LYS VAL GLU SEQRES 1 D 130 ALA ARG MET PHE GLU MET PHE ASN LEU ASP TRP LYS SER SEQRES 2 D 130 GLY GLY THR MET LYS ILE LYS GLY HIS ILE SER GLU ASP SEQRES 3 D 130 ALA GLU SER PHE ALA ILE ASN LEU GLY CYS LYS SER SER SEQRES 4 D 130 ASP LEU ALA LEU HIS PHE ASN PRO ARG PHE ASN GLU SER SEQRES 5 D 130 VAL ILE VAL CYS ASN SER LEU CYS SER ASP ASN TRP GLN SEQRES 6 D 130 GLN GLU GLN ARG ASP LYS HIS PHE ASN PHE TYR LYS GLY SEQRES 7 D 130 SER THR VAL LYS ILE ILE VAL GLU PHE LEU GLY ASP LYS SEQRES 8 D 130 PHE LEU VAL LYS LEU PRO ASP GLY HIS GLU VAL GLU PHE SEQRES 9 D 130 PRO ASN ARG HIS GLY TYR ASP LYS ILE SER TYR LEU ASN SEQRES 10 D 130 ILE LEU GLY GLY PHE LYS VAL THR SER PHE LYS VAL GLU SEQRES 1 E 130 ALA ARG MET PHE GLU MET PHE ASN LEU ASP TRP LYS SER SEQRES 2 E 130 GLY GLY THR MET LYS ILE LYS GLY HIS ILE SER GLU ASP SEQRES 3 E 130 ALA GLU SER PHE ALA ILE ASN LEU GLY CYS LYS SER SER SEQRES 4 E 130 ASP LEU ALA LEU HIS PHE ASN PRO ARG PHE ASN GLU SER SEQRES 5 E 130 VAL ILE VAL CYS ASN SER LEU CYS SER ASP ASN TRP GLN SEQRES 6 E 130 GLN GLU GLN ARG ASP LYS HIS PHE ASN PHE TYR LYS GLY SEQRES 7 E 130 SER THR VAL LYS ILE ILE VAL GLU PHE LEU GLY ASP LYS SEQRES 8 E 130 PHE LEU VAL LYS LEU PRO ASP GLY HIS GLU VAL GLU PHE SEQRES 9 E 130 PRO ASN ARG HIS GLY TYR ASP LYS ILE SER TYR LEU ASN SEQRES 10 E 130 ILE LEU GLY GLY PHE LYS VAL THR SER PHE LYS VAL GLU SEQRES 1 F 130 ALA ARG MET PHE GLU MET PHE ASN LEU ASP TRP LYS SER SEQRES 2 F 130 GLY GLY THR MET LYS ILE LYS GLY HIS ILE SER GLU ASP SEQRES 3 F 130 ALA GLU SER PHE ALA ILE ASN LEU GLY CYS LYS SER SER SEQRES 4 F 130 ASP LEU ALA LEU HIS PHE ASN PRO ARG PHE ASN GLU SER SEQRES 5 F 130 VAL ILE VAL CYS ASN SER LEU CYS SER ASP ASN TRP GLN SEQRES 6 F 130 GLN GLU GLN ARG ASP LYS HIS PHE ASN PHE TYR LYS GLY SEQRES 7 F 130 SER THR VAL LYS ILE ILE VAL GLU PHE LEU GLY ASP LYS SEQRES 8 F 130 PHE LEU VAL LYS LEU PRO ASP GLY HIS GLU VAL GLU PHE SEQRES 9 F 130 PRO ASN ARG HIS GLY TYR ASP LYS ILE SER TYR LEU ASN SEQRES 10 F 130 ILE LEU GLY GLY PHE LYS VAL THR SER PHE LYS VAL GLU HET BGC G 1 12 HET GAL G 2 11 HET BGC H 1 12 HET GAL H 2 11 HET SO4 A1132 5 HET SO4 B1132 5 HET SO4 C1132 5 HET SO4 D1132 5 HET SO4 F1132 5 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SO4 SULFATE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 7 BGC 2(C6 H12 O6) FORMUL 7 GAL 2(C6 H12 O6) FORMUL 9 SO4 5(O4 S 2-) FORMUL 14 HOH *507(H2 O) HELIX 1 1 PHE C 50 SER C 53 5 4 SHEET 1 AA 2 ASN A 64 TRP A 65 0 SHEET 2 AA 2 VAL A 54 CYS A 61 -1 O CYS A 61 N ASN A 64 SHEET 1 AB 2 GLN A 69 ASP A 71 0 SHEET 2 AB 2 VAL A 54 CYS A 61 -1 O ILE A 55 N ASP A 71 SHEET 1 BA 2 ASN B 64 TRP B 65 0 SHEET 2 BA 2 VAL B 54 CYS B 61 -1 O CYS B 61 N ASN B 64 SHEET 1 BB 2 GLN B 69 ASP B 71 0 SHEET 2 BB 2 VAL B 54 CYS B 61 -1 O ILE B 55 N ASP B 71 SHEET 1 AC 2 TRP A 12 LYS A 13 0 SHEET 2 AC 2 LYS A 113 ILE A 114 -1 O ILE A 114 N TRP A 12 SHEET 1 AD10 GLU A 102 PRO A 106 0 SHEET 2 AD10 LYS A 92 LYS A 96 -1 O PHE A 93 N PHE A 105 SHEET 3 AD10 THR A 81 LEU A 89 -1 O ILE A 85 N LYS A 96 SHEET 4 AD10 THR A 17 ILE A 24 -1 O MET A 18 N VAL A 86 SHEET 5 AD10 PHE A 123 GLU A 131 -1 O LYS A 124 N HIS A 23 SHEET 6 AD10 PHE B 123 GLU B 131 -1 O THR B 126 N VAL A 130 SHEET 7 AD10 THR B 17 ILE B 24 -1 O THR B 17 N GLU B 131 SHEET 8 AD10 THR B 81 PHE B 88 -1 O VAL B 82 N GLY B 22 SHEET 9 AD10 LYS B 92 LYS B 96 -1 O LEU B 94 N GLU B 87 SHEET 10 AD10 GLU B 102 PRO B 106 -1 O VAL B 103 N VAL B 95 SHEET 1 BC 2 TRP B 12 LYS B 13 0 SHEET 2 BC 2 LYS B 113 ILE B 114 -1 O ILE B 114 N TRP B 12 SHEET 1 CA 2 ASN C 64 TRP C 65 0 SHEET 2 CA 2 VAL C 54 CYS C 61 -1 O CYS C 61 N ASN C 64 SHEET 1 CB 2 GLN C 69 ASP C 71 0 SHEET 2 CB 2 VAL C 54 CYS C 61 -1 O ILE C 55 N ASP C 71 SHEET 1 FA 2 ASN F 64 TRP F 65 0 SHEET 2 FA 2 VAL F 54 CYS F 61 -1 O CYS F 61 N ASN F 64 SHEET 1 FB 2 GLN F 69 ASP F 71 0 SHEET 2 FB 2 VAL F 54 CYS F 61 -1 O ILE F 55 N ASP F 71 SHEET 1 CC 2 TRP C 12 LYS C 13 0 SHEET 2 CC 2 LYS C 113 ILE C 114 -1 O ILE C 114 N TRP C 12 SHEET 1 CD10 GLU C 102 PRO C 106 0 SHEET 2 CD10 LYS C 92 LYS C 96 -1 O PHE C 93 N PHE C 105 SHEET 3 CD10 THR C 81 LEU C 89 -1 O ILE C 85 N LYS C 96 SHEET 4 CD10 THR C 17 ILE C 24 -1 O MET C 18 N VAL C 86 SHEET 5 CD10 PHE C 123 VAL C 130 -1 O LYS C 124 N HIS C 23 SHEET 6 CD10 PHE F 123 GLU F 131 -1 O THR F 126 N VAL C 130 SHEET 7 CD10 THR F 17 ILE F 24 -1 O THR F 17 N GLU F 131 SHEET 8 CD10 THR F 81 LEU F 89 -1 O VAL F 82 N GLY F 22 SHEET 9 CD10 LYS F 92 LYS F 96 -1 O LYS F 92 N LEU F 89 SHEET 10 CD10 GLU F 102 PRO F 106 -1 O VAL F 103 N VAL F 95 SHEET 1 DA 2 ASN D 64 TRP D 65 0 SHEET 2 DA 2 VAL D 54 CYS D 61 -1 O CYS D 61 N ASN D 64 SHEET 1 DB 2 GLN D 69 ASP D 71 0 SHEET 2 DB 2 VAL D 54 CYS D 61 -1 O ILE D 55 N ASP D 71 SHEET 1 EA 2 ASN E 64 TRP E 65 0 SHEET 2 EA 2 VAL E 54 CYS E 61 -1 O CYS E 61 N ASN E 64 SHEET 1 EB 2 GLN E 69 ASP E 71 0 SHEET 2 EB 2 VAL E 54 CYS E 61 -1 O ILE E 55 N ASP E 71 SHEET 1 DC10 GLU D 102 PRO D 106 0 SHEET 2 DC10 LYS D 92 LYS D 96 -1 O PHE D 93 N PHE D 105 SHEET 3 DC10 THR D 81 LEU D 89 -1 O ILE D 85 N LYS D 96 SHEET 4 DC10 THR D 17 ILE D 24 -1 O MET D 18 N VAL D 86 SHEET 5 DC10 PHE D 123 GLU D 131 -1 O LYS D 124 N HIS D 23 SHEET 6 DC10 PHE E 123 VAL E 130 -1 O THR E 126 N VAL D 130 SHEET 7 DC10 THR E 17 ILE E 24 -1 O LYS E 19 N LYS E 129 SHEET 8 DC10 THR E 81 LEU E 89 -1 O VAL E 82 N GLY E 22 SHEET 9 DC10 LYS E 92 LYS E 96 -1 O LYS E 92 N LEU E 89 SHEET 10 DC10 GLU E 102 PRO E 106 -1 O VAL E 103 N VAL E 95 SHEET 1 EC 2 TRP E 12 LYS E 13 0 SHEET 2 EC 2 LYS E 113 ILE E 114 -1 O ILE E 114 N TRP E 12 LINK O4 BGC G 1 C1 GAL G 2 1555 1555 1.46 LINK O4 BGC H 1 C1 GAL H 2 1555 1555 1.42 CRYST1 65.853 90.700 151.657 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006594 0.00000