HEADER OXIDOREDUCTASE 11-OCT-12 2YN1 TITLE CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST GAMMA- TITLE 2 PROTEOBACTERIA COMMON ANCESTOR (LGPCA) FROM THE PRECAMBRIAN PERIOD COMPND MOL_ID: 1; COMPND 2 MOLECULE: LGPCA THIOREDOXIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET30A PLUS KEYWDS OXIDOREDUCTASE, ALPHA BETA, ELECTRON TRANSPORT, ANCESTRAL KEYWDS 2 RECONSTRUCTED PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,A.INGLES-PRIETO,B.IBARRA-MOLERO,J.M.SANCHEZ-RUIZ REVDAT 5 20-DEC-23 2YN1 1 REMARK REVDAT 4 06-MAR-19 2YN1 1 REMARK ATOM REVDAT 3 25-SEP-13 2YN1 1 JRNL REVDAT 2 28-AUG-13 2YN1 1 HETATM REVDAT 1 21-AUG-13 2YN1 0 JRNL AUTH A.INGLES-PRIETO,B.IBARRA-MOLERO,A.DELGADO-DELGADO, JRNL AUTH 2 R.PEREZ-JIMENEZ,J.M.FERNANDEZ,E.A.GAUCHER,J.M.SANCHEZ-RUIZ, JRNL AUTH 3 J.A.GAVIRA JRNL TITL CONSERVATION OF PROTEIN STRUCTURE OVER FOUR BILLION YEARS JRNL REF STRUCTURE V. 21 1690 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23932589 JRNL DOI 10.1016/J.STR.2013.06.020 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 43303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1007 - 3.2749 0.97 2606 139 0.1511 0.1876 REMARK 3 2 3.2749 - 2.5997 0.96 2580 137 0.1568 0.2029 REMARK 3 3 2.5997 - 2.2711 0.97 2581 126 0.1537 0.2090 REMARK 3 4 2.2711 - 2.0635 0.98 2618 129 0.1462 0.2030 REMARK 3 5 2.0635 - 1.9156 0.97 2543 139 0.1446 0.1554 REMARK 3 6 1.9156 - 1.8027 0.97 2542 128 0.1572 0.1894 REMARK 3 7 1.8027 - 1.7124 0.98 2575 149 0.1659 0.2093 REMARK 3 8 1.7124 - 1.6379 0.98 2576 158 0.1742 0.2162 REMARK 3 9 1.6379 - 1.5748 0.95 2495 132 0.1906 0.2248 REMARK 3 10 1.5748 - 1.5205 0.96 2553 141 0.1965 0.1978 REMARK 3 11 1.5205 - 1.4729 0.97 2541 144 0.2081 0.2477 REMARK 3 12 1.4729 - 1.4308 0.98 2564 146 0.2191 0.2534 REMARK 3 13 1.4308 - 1.3932 0.98 2604 122 0.2248 0.2684 REMARK 3 14 1.3932 - 1.3592 0.98 2586 141 0.2439 0.2271 REMARK 3 15 1.3592 - 1.3283 0.97 2556 143 0.2601 0.2605 REMARK 3 16 1.3283 - 1.3000 0.98 2589 120 0.2700 0.2689 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1901 REMARK 3 ANGLE : 1.350 2593 REMARK 3 CHIRALITY : 0.072 290 REMARK 3 PLANARITY : 0.008 339 REMARK 3 DIHEDRAL : 12.716 766 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 2:31) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7775 -12.6240 23.2422 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.0801 REMARK 3 T33: 0.0451 T12: 0.0168 REMARK 3 T13: 0.0051 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.8316 L22: 4.8295 REMARK 3 L33: 2.5342 L12: 0.8597 REMARK 3 L13: -0.5462 L23: -1.1460 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.1768 S13: -0.0361 REMARK 3 S21: 0.2327 S22: 0.0431 S23: 0.0003 REMARK 3 S31: -0.0636 S32: -0.0075 S33: -0.0351 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 32:68) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0079 -8.8842 18.3874 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.1038 REMARK 3 T33: 0.0574 T12: 0.0069 REMARK 3 T13: 0.0052 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 3.2949 L22: 2.2030 REMARK 3 L33: 1.2379 L12: 0.5035 REMARK 3 L13: 0.1001 L23: -0.2828 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: -0.2375 S13: 0.1613 REMARK 3 S21: 0.0804 S22: -0.0628 S23: 0.1356 REMARK 3 S31: -0.1244 S32: -0.1337 S33: -0.0143 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 69:106) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4619 -15.5749 11.2098 REMARK 3 T TENSOR REMARK 3 T11: 0.1000 T22: 0.0697 REMARK 3 T33: 0.0480 T12: 0.0125 REMARK 3 T13: -0.0054 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 3.8639 L22: 1.8683 REMARK 3 L33: 1.6511 L12: 0.3328 REMARK 3 L13: 0.4687 L23: 0.3214 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: 0.1201 S13: -0.1094 REMARK 3 S21: -0.1305 S22: -0.0057 S23: 0.0866 REMARK 3 S31: 0.0445 S32: -0.0490 S33: 0.0032 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 2:10) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4430 -1.5896 4.1196 REMARK 3 T TENSOR REMARK 3 T11: 0.1045 T22: 0.1278 REMARK 3 T33: 0.0920 T12: -0.0174 REMARK 3 T13: 0.0465 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 2.0046 L22: 4.9911 REMARK 3 L33: 6.5244 L12: -2.9913 REMARK 3 L13: 3.3376 L23: -2.3515 REMARK 3 S TENSOR REMARK 3 S11: -0.1329 S12: -0.0189 S13: -0.0679 REMARK 3 S21: 0.2377 S22: -0.0556 S23: 0.2256 REMARK 3 S31: 0.1176 S32: -0.1902 S33: 0.2247 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 11:20) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9253 8.0341 4.0670 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.1117 REMARK 3 T33: 0.0705 T12: 0.0200 REMARK 3 T13: 0.0167 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 3.8620 L22: 8.7809 REMARK 3 L33: 7.7938 L12: 3.2377 REMARK 3 L13: 0.6213 L23: 4.6720 REMARK 3 S TENSOR REMARK 3 S11: 0.1274 S12: -0.2236 S13: 0.1748 REMARK 3 S21: 0.3084 S22: -0.0825 S23: 0.1172 REMARK 3 S31: -0.2561 S32: -0.2503 S33: -0.0524 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 21:31) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8544 -6.1412 -3.6842 REMARK 3 T TENSOR REMARK 3 T11: 0.1407 T22: 0.0911 REMARK 3 T33: 0.0575 T12: -0.0083 REMARK 3 T13: 0.0249 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.0350 L22: 3.7806 REMARK 3 L33: 2.6532 L12: -0.3015 REMARK 3 L13: -0.1487 L23: 1.4480 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: -0.1532 S13: -0.1940 REMARK 3 S21: 0.0673 S22: -0.0411 S23: 0.0284 REMARK 3 S31: 0.3780 S32: 0.0213 S33: 0.0710 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 32:47) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2471 -6.3475 1.7917 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: 0.1928 REMARK 3 T33: 0.1363 T12: -0.0295 REMARK 3 T13: -0.0146 T23: 0.0816 REMARK 3 L TENSOR REMARK 3 L11: 3.6665 L22: 7.3448 REMARK 3 L33: 2.0302 L12: 2.5692 REMARK 3 L13: 4.4354 L23: 7.3750 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: -0.1509 S13: -0.1685 REMARK 3 S21: 0.3474 S22: 0.0049 S23: -0.3047 REMARK 3 S31: 0.3410 S32: 0.2754 S33: -0.0699 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 48:68) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2232 0.0741 0.1232 REMARK 3 T TENSOR REMARK 3 T11: 0.0861 T22: 0.1297 REMARK 3 T33: 0.0872 T12: -0.0101 REMARK 3 T13: 0.0344 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 3.4011 L22: 2.3405 REMARK 3 L33: 3.5878 L12: 0.4449 REMARK 3 L13: 0.9665 L23: 0.7686 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.3308 S13: 0.0001 REMARK 3 S21: 0.1122 S22: -0.1868 S23: 0.1892 REMARK 3 S31: 0.0471 S32: -0.0590 S33: 0.1331 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 69:83) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6151 3.3143 -7.6665 REMARK 3 T TENSOR REMARK 3 T11: 0.0855 T22: 0.0710 REMARK 3 T33: 0.0584 T12: 0.0113 REMARK 3 T13: 0.0122 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 3.5812 L22: 4.5485 REMARK 3 L33: 3.5440 L12: -1.5609 REMARK 3 L13: -0.6334 L23: 0.9536 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: 0.0884 S13: 0.1317 REMARK 3 S21: -0.3183 S22: -0.1246 S23: 0.0222 REMARK 3 S31: -0.1797 S32: -0.2375 S33: 0.0130 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 84:94) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8948 3.5055 -7.8695 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.0772 REMARK 3 T33: 0.1211 T12: -0.0169 REMARK 3 T13: 0.0274 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 3.5095 L22: 0.9281 REMARK 3 L33: 2.7666 L12: 0.5005 REMARK 3 L13: 1.8365 L23: -0.9132 REMARK 3 S TENSOR REMARK 3 S11: 0.1525 S12: 0.0866 S13: -0.0887 REMARK 3 S21: -0.0929 S22: 0.0225 S23: -0.1031 REMARK 3 S31: -0.1122 S32: 0.1390 S33: -0.1934 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 95:106) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3741 5.4633 -2.3411 REMARK 3 T TENSOR REMARK 3 T11: 0.0736 T22: 0.1431 REMARK 3 T33: 0.1456 T12: -0.0180 REMARK 3 T13: 0.0010 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 6.5797 L22: 7.2293 REMARK 3 L33: 3.7384 L12: -1.9152 REMARK 3 L13: 1.2700 L23: -0.8347 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: -0.1776 S13: 0.1579 REMARK 3 S21: 0.0551 S22: -0.0659 S23: -0.2592 REMARK 3 S31: -0.0703 S32: 0.2138 S33: 0.0269 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YN1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43308 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 34.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2TRX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COUNTER-DIFFUSION TECHNIQUE. 30% PEG REMARK 280 400, 0.1 M TRIS-HCL, 0.2 M NA CITRATE, PH 8.50, 277K., PH 3.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.45500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2045 O HOH B 2046 1.92 REMARK 500 OE2 GLU B 100 O HOH B 2145 1.92 REMARK 500 OE1 GLU B 29 O HOH B 2052 1.92 REMARK 500 O HOH A 2152 O HOH A 2170 1.94 REMARK 500 O HOH A 2147 O HOH A 2152 1.99 REMARK 500 O HOH A 2054 O HOH A 2122 2.00 REMARK 500 O HOH A 2054 O HOH A 2121 2.04 REMARK 500 OE2 GLU A 49 O HOH A 2005 2.04 REMARK 500 O HOH A 2128 O HOH A 2129 2.06 REMARK 500 O HOH B 2016 O HOH B 2017 2.07 REMARK 500 O HOH A 2009 O HOH A 2018 2.10 REMARK 500 O HOH B 2015 O HOH B 2017 2.11 REMARK 500 OD2 ASP A 60 O HOH A 2130 2.11 REMARK 500 O4 PGE B 1107 O HOH B 2154 2.12 REMARK 500 O HOH B 2041 O HOH B 2099 2.13 REMARK 500 O HOH B 2003 O HOH B 2004 2.13 REMARK 500 OG SER B 2 O HOH B 2006 2.14 REMARK 500 O HOH B 2149 O HOH B 2150 2.15 REMARK 500 O HOH B 2041 O HOH B 2098 2.18 REMARK 500 O HOH B 2039 O HOH B 2094 2.19 REMARK 500 OD1 ASP B 19 O HOH B 2030 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2033 O HOH B 2030 2646 1.78 REMARK 500 NZ LYS A 35 O HOH A 2046 2656 2.06 REMARK 500 NH1 ARG B 72 O HOH A 2106 1554 2.07 REMARK 500 OD1 ASN A 82 O HOH A 2081 2646 2.11 REMARK 500 OD1 ASP A 19 O HOH B 2031 2646 2.12 REMARK 500 NH1 ARG B 72 O HOH A 2104 1554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 72 -74.38 -104.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2053 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A2061 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B2042 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B2155 DISTANCE = 5.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 1107 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YJ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A HYPERSTABLE PROTEIN FROM THE PRECAMBRIAN REMARK 900 PERIOD REMARK 900 RELATED ID: 2YNX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ARCHAEA REMARK 900 COMMON ANCESTOR (LACA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 2YOI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST REMARK 900 EUKARYOTES COMMON ANCESTOR (LECA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 2YPM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ANIMAL REMARK 900 AND FUNGI COMMON ANCESTOR (LAFCA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 3ZIV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ARCHAEA- REMARK 900 EUKARYOTES COMMON ANCESTOR (AECA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 4BA7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST REMARK 900 BACTERIA COMMON ANCESTOR (LBCA) FROM THE PRECAMBRIAN PERIOD DBREF 2YN1 A 1 106 PDB 2YN1 2YN1 1 106 DBREF 2YN1 B 1 106 PDB 2YN1 2YN1 1 106 SEQRES 1 A 106 MET SER ILE ILE HIS VAL THR ASP ASP SER PHE ASP GLN SEQRES 2 A 106 ASP VAL LEU LYS ALA ASP LYS PRO VAL LEU VAL ASP PHE SEQRES 3 A 106 TRP ALA GLU TRP CYS GLY PRO CYS LYS MET ILE ALA PRO SEQRES 4 A 106 ILE LEU ASP GLU ILE ALA GLU GLU TYR GLU GLY LYS LEU SEQRES 5 A 106 LYS VAL ALA LYS VAL ASN ILE ASP GLU ASN PRO GLU THR SEQRES 6 A 106 ALA ALA LYS TYR GLY ILE ARG GLY ILE PRO THR LEU MET SEQRES 7 A 106 LEU PHE LYS ASN GLY GLU VAL ALA ALA THR LYS VAL GLY SEQRES 8 A 106 ALA LEU SER LYS SER GLN LEU LYS GLU PHE LEU ASP ALA SEQRES 9 A 106 ASN LEU SEQRES 1 B 106 MET SER ILE ILE HIS VAL THR ASP ASP SER PHE ASP GLN SEQRES 2 B 106 ASP VAL LEU LYS ALA ASP LYS PRO VAL LEU VAL ASP PHE SEQRES 3 B 106 TRP ALA GLU TRP CYS GLY PRO CYS LYS MET ILE ALA PRO SEQRES 4 B 106 ILE LEU ASP GLU ILE ALA GLU GLU TYR GLU GLY LYS LEU SEQRES 5 B 106 LYS VAL ALA LYS VAL ASN ILE ASP GLU ASN PRO GLU THR SEQRES 6 B 106 ALA ALA LYS TYR GLY ILE ARG GLY ILE PRO THR LEU MET SEQRES 7 B 106 LEU PHE LYS ASN GLY GLU VAL ALA ALA THR LYS VAL GLY SEQRES 8 B 106 ALA LEU SER LYS SER GLN LEU LYS GLU PHE LEU ASP ALA SEQRES 9 B 106 ASN LEU HET PGE A1107 24 HET PGE B1107 24 HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 PGE 2(C6 H14 O4) FORMUL 5 HOH *358(H2 O) HELIX 1 1 SER A 10 VAL A 15 1 6 HELIX 2 2 CYS A 31 TYR A 48 1 18 HELIX 3 3 ASN A 62 TYR A 69 1 8 HELIX 4 4 SER A 94 LEU A 106 1 13 HELIX 5 5 SER B 10 VAL B 15 1 6 HELIX 6 6 CYS B 31 TYR B 48 1 18 HELIX 7 7 ASN B 62 TYR B 69 1 8 HELIX 8 8 SER B 94 LEU B 106 1 13 SHEET 1 AA 5 ILE A 3 HIS A 5 0 SHEET 2 AA 5 LYS A 53 ASN A 58 1 O VAL A 54 N ILE A 4 SHEET 3 AA 5 VAL A 22 TRP A 27 1 O LEU A 23 N ALA A 55 SHEET 4 AA 5 THR A 76 LYS A 81 -1 O THR A 76 N PHE A 26 SHEET 5 AA 5 GLU A 84 VAL A 90 -1 O GLU A 84 N LYS A 81 SHEET 1 BA 5 ILE B 3 HIS B 5 0 SHEET 2 BA 5 LYS B 53 ASN B 58 1 O VAL B 54 N ILE B 4 SHEET 3 BA 5 VAL B 22 TRP B 27 1 O LEU B 23 N ALA B 55 SHEET 4 BA 5 THR B 76 LYS B 81 -1 O THR B 76 N PHE B 26 SHEET 5 BA 5 GLU B 84 VAL B 90 -1 O GLU B 84 N LYS B 81 SSBOND 1 CYS A 31 CYS A 34 1555 1555 2.13 SSBOND 2 CYS B 31 CYS B 34 1555 1555 2.11 CISPEP 1 ILE A 74 PRO A 75 0 0.14 CISPEP 2 ILE B 74 PRO B 75 0 -2.37 SITE 1 AC1 4 LYS A 68 MET A 78 HOH A2205 HOH A2206 SITE 1 AC2 3 LYS B 68 HOH B2153 HOH B2154 CRYST1 36.090 62.910 42.910 90.00 109.17 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027709 0.000000 0.009633 0.00000 SCALE2 0.000000 0.015896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024673 0.00000