data_2YNK # _entry.id 2YNK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YNK PDBE EBI-54489 WWPDB D_1290054489 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YNK _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-10-16 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bushell, S.R.' 1 'Mainprize, I.L.' 2 'Wear, M.A.' 3 'Lou, H.' 4 'Kong, L.' 5 'Davis, B.' 6 'Bayley, H.' 7 'Whitfield, C.' 8 'Naismith, J.H.' 9 # _citation.id primary _citation.title 'Wzi is an Outer Membrane Lectin that Underpins Group 1 Capsule Assembly in Escherichia Coli.' _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 844 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23623732 _citation.pdbx_database_id_DOI 10.1016/J.STR.2013.03.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bushell, S.R.' 1 primary 'Mainprize, I.L.' 2 primary 'Wear, M.A.' 3 primary 'Lou, H.' 4 primary 'Whitfield, C.' 5 primary 'Naismith, J.H.' 6 # _cell.entry_id 2YNK _cell.length_a 136.660 _cell.length_b 152.080 _cell.length_c 95.040 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YNK _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat WZI 51089.824 1 ? ? ? ? 2 non-polymer syn N-OCTANE 114.229 6 ? ? ? ? 3 non-polymer syn DODECANE 170.335 7 ? ? ? ? 4 non-polymer syn HEXANE 86.175 5 ? ? ? ? 5 water nat water 18.015 14 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;AGLVVNDNDLRNDLAWLSDRGVIHLSLSTWPLSQEEIARALKKAKPSYSSEQVVLARINQRLSALKADFRVTGYTSTDQP GTPQGFGQTQPADNSLGLAFNNSGEWWDVHLQGNVEGGERISNGSRFNANGAYGAVKFWNQWLSFGQVPQWWGPGYEGSL IRGDA(MSE)RP(MSE)TGFL(MSE)QRAEQAAPETWWLRWVGPWQYQISASQ(MSE)NQYNAVPHAKIIGGRFTFSPIQ SLELGASRI(MSE)QWGGKGRPESLSNFWDGLTGKDNTAANDPNEPGNQLAGFDFKFKLEPTLGWPVSFYGQ(MSE)IGE DESGFLPSAN(MSE)FLGGIEGHHGWGKDAVNWYLEAHDTRTN(MSE)SRTNYSYTHHIYKDGYYQQGYPLGDA(MSE)G GDGQLVAGKVELITEDNQRWSTRLVYAKVNPENQSINKAFPHADTLKGIQLGWSGDVYQSVRLNTSLWYTNANNSDSDDV GASAGIEIPFSL ; _entity_poly.pdbx_seq_one_letter_code_can ;AGLVVNDNDLRNDLAWLSDRGVIHLSLSTWPLSQEEIARALKKAKPSYSSEQVVLARINQRLSALKADFRVTGYTSTDQP GTPQGFGQTQPADNSLGLAFNNSGEWWDVHLQGNVEGGERISNGSRFNANGAYGAVKFWNQWLSFGQVPQWWGPGYEGSL IRGDAMRPMTGFLMQRAEQAAPETWWLRWVGPWQYQISASQMNQYNAVPHAKIIGGRFTFSPIQSLELGASRIMQWGGKG RPESLSNFWDGLTGKDNTAANDPNEPGNQLAGFDFKFKLEPTLGWPVSFYGQMIGEDESGFLPSANMFLGGIEGHHGWGK DAVNWYLEAHDTRTNMSRTNYSYTHHIYKDGYYQQGYPLGDAMGGDGQLVAGKVELITEDNQRWSTRLVYAKVNPENQSI NKAFPHADTLKGIQLGWSGDVYQSVRLNTSLWYTNANNSDSDDVGASAGIEIPFSL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLY n 1 3 LEU n 1 4 VAL n 1 5 VAL n 1 6 ASN n 1 7 ASP n 1 8 ASN n 1 9 ASP n 1 10 LEU n 1 11 ARG n 1 12 ASN n 1 13 ASP n 1 14 LEU n 1 15 ALA n 1 16 TRP n 1 17 LEU n 1 18 SER n 1 19 ASP n 1 20 ARG n 1 21 GLY n 1 22 VAL n 1 23 ILE n 1 24 HIS n 1 25 LEU n 1 26 SER n 1 27 LEU n 1 28 SER n 1 29 THR n 1 30 TRP n 1 31 PRO n 1 32 LEU n 1 33 SER n 1 34 GLN n 1 35 GLU n 1 36 GLU n 1 37 ILE n 1 38 ALA n 1 39 ARG n 1 40 ALA n 1 41 LEU n 1 42 LYS n 1 43 LYS n 1 44 ALA n 1 45 LYS n 1 46 PRO n 1 47 SER n 1 48 TYR n 1 49 SER n 1 50 SER n 1 51 GLU n 1 52 GLN n 1 53 VAL n 1 54 VAL n 1 55 LEU n 1 56 ALA n 1 57 ARG n 1 58 ILE n 1 59 ASN n 1 60 GLN n 1 61 ARG n 1 62 LEU n 1 63 SER n 1 64 ALA n 1 65 LEU n 1 66 LYS n 1 67 ALA n 1 68 ASP n 1 69 PHE n 1 70 ARG n 1 71 VAL n 1 72 THR n 1 73 GLY n 1 74 TYR n 1 75 THR n 1 76 SER n 1 77 THR n 1 78 ASP n 1 79 GLN n 1 80 PRO n 1 81 GLY n 1 82 THR n 1 83 PRO n 1 84 GLN n 1 85 GLY n 1 86 PHE n 1 87 GLY n 1 88 GLN n 1 89 THR n 1 90 GLN n 1 91 PRO n 1 92 ALA n 1 93 ASP n 1 94 ASN n 1 95 SER n 1 96 LEU n 1 97 GLY n 1 98 LEU n 1 99 ALA n 1 100 PHE n 1 101 ASN n 1 102 ASN n 1 103 SER n 1 104 GLY n 1 105 GLU n 1 106 TRP n 1 107 TRP n 1 108 ASP n 1 109 VAL n 1 110 HIS n 1 111 LEU n 1 112 GLN n 1 113 GLY n 1 114 ASN n 1 115 VAL n 1 116 GLU n 1 117 GLY n 1 118 GLY n 1 119 GLU n 1 120 ARG n 1 121 ILE n 1 122 SER n 1 123 ASN n 1 124 GLY n 1 125 SER n 1 126 ARG n 1 127 PHE n 1 128 ASN n 1 129 ALA n 1 130 ASN n 1 131 GLY n 1 132 ALA n 1 133 TYR n 1 134 GLY n 1 135 ALA n 1 136 VAL n 1 137 LYS n 1 138 PHE n 1 139 TRP n 1 140 ASN n 1 141 GLN n 1 142 TRP n 1 143 LEU n 1 144 SER n 1 145 PHE n 1 146 GLY n 1 147 GLN n 1 148 VAL n 1 149 PRO n 1 150 GLN n 1 151 TRP n 1 152 TRP n 1 153 GLY n 1 154 PRO n 1 155 GLY n 1 156 TYR n 1 157 GLU n 1 158 GLY n 1 159 SER n 1 160 LEU n 1 161 ILE n 1 162 ARG n 1 163 GLY n 1 164 ASP n 1 165 ALA n 1 166 MSE n 1 167 ARG n 1 168 PRO n 1 169 MSE n 1 170 THR n 1 171 GLY n 1 172 PHE n 1 173 LEU n 1 174 MSE n 1 175 GLN n 1 176 ARG n 1 177 ALA n 1 178 GLU n 1 179 GLN n 1 180 ALA n 1 181 ALA n 1 182 PRO n 1 183 GLU n 1 184 THR n 1 185 TRP n 1 186 TRP n 1 187 LEU n 1 188 ARG n 1 189 TRP n 1 190 VAL n 1 191 GLY n 1 192 PRO n 1 193 TRP n 1 194 GLN n 1 195 TYR n 1 196 GLN n 1 197 ILE n 1 198 SER n 1 199 ALA n 1 200 SER n 1 201 GLN n 1 202 MSE n 1 203 ASN n 1 204 GLN n 1 205 TYR n 1 206 ASN n 1 207 ALA n 1 208 VAL n 1 209 PRO n 1 210 HIS n 1 211 ALA n 1 212 LYS n 1 213 ILE n 1 214 ILE n 1 215 GLY n 1 216 GLY n 1 217 ARG n 1 218 PHE n 1 219 THR n 1 220 PHE n 1 221 SER n 1 222 PRO n 1 223 ILE n 1 224 GLN n 1 225 SER n 1 226 LEU n 1 227 GLU n 1 228 LEU n 1 229 GLY n 1 230 ALA n 1 231 SER n 1 232 ARG n 1 233 ILE n 1 234 MSE n 1 235 GLN n 1 236 TRP n 1 237 GLY n 1 238 GLY n 1 239 LYS n 1 240 GLY n 1 241 ARG n 1 242 PRO n 1 243 GLU n 1 244 SER n 1 245 LEU n 1 246 SER n 1 247 ASN n 1 248 PHE n 1 249 TRP n 1 250 ASP n 1 251 GLY n 1 252 LEU n 1 253 THR n 1 254 GLY n 1 255 LYS n 1 256 ASP n 1 257 ASN n 1 258 THR n 1 259 ALA n 1 260 ALA n 1 261 ASN n 1 262 ASP n 1 263 PRO n 1 264 ASN n 1 265 GLU n 1 266 PRO n 1 267 GLY n 1 268 ASN n 1 269 GLN n 1 270 LEU n 1 271 ALA n 1 272 GLY n 1 273 PHE n 1 274 ASP n 1 275 PHE n 1 276 LYS n 1 277 PHE n 1 278 LYS n 1 279 LEU n 1 280 GLU n 1 281 PRO n 1 282 THR n 1 283 LEU n 1 284 GLY n 1 285 TRP n 1 286 PRO n 1 287 VAL n 1 288 SER n 1 289 PHE n 1 290 TYR n 1 291 GLY n 1 292 GLN n 1 293 MSE n 1 294 ILE n 1 295 GLY n 1 296 GLU n 1 297 ASP n 1 298 GLU n 1 299 SER n 1 300 GLY n 1 301 PHE n 1 302 LEU n 1 303 PRO n 1 304 SER n 1 305 ALA n 1 306 ASN n 1 307 MSE n 1 308 PHE n 1 309 LEU n 1 310 GLY n 1 311 GLY n 1 312 ILE n 1 313 GLU n 1 314 GLY n 1 315 HIS n 1 316 HIS n 1 317 GLY n 1 318 TRP n 1 319 GLY n 1 320 LYS n 1 321 ASP n 1 322 ALA n 1 323 VAL n 1 324 ASN n 1 325 TRP n 1 326 TYR n 1 327 LEU n 1 328 GLU n 1 329 ALA n 1 330 HIS n 1 331 ASP n 1 332 THR n 1 333 ARG n 1 334 THR n 1 335 ASN n 1 336 MSE n 1 337 SER n 1 338 ARG n 1 339 THR n 1 340 ASN n 1 341 TYR n 1 342 SER n 1 343 TYR n 1 344 THR n 1 345 HIS n 1 346 HIS n 1 347 ILE n 1 348 TYR n 1 349 LYS n 1 350 ASP n 1 351 GLY n 1 352 TYR n 1 353 TYR n 1 354 GLN n 1 355 GLN n 1 356 GLY n 1 357 TYR n 1 358 PRO n 1 359 LEU n 1 360 GLY n 1 361 ASP n 1 362 ALA n 1 363 MSE n 1 364 GLY n 1 365 GLY n 1 366 ASP n 1 367 GLY n 1 368 GLN n 1 369 LEU n 1 370 VAL n 1 371 ALA n 1 372 GLY n 1 373 LYS n 1 374 VAL n 1 375 GLU n 1 376 LEU n 1 377 ILE n 1 378 THR n 1 379 GLU n 1 380 ASP n 1 381 ASN n 1 382 GLN n 1 383 ARG n 1 384 TRP n 1 385 SER n 1 386 THR n 1 387 ARG n 1 388 LEU n 1 389 VAL n 1 390 TYR n 1 391 ALA n 1 392 LYS n 1 393 VAL n 1 394 ASN n 1 395 PRO n 1 396 GLU n 1 397 ASN n 1 398 GLN n 1 399 SER n 1 400 ILE n 1 401 ASN n 1 402 LYS n 1 403 ALA n 1 404 PHE n 1 405 PRO n 1 406 HIS n 1 407 ALA n 1 408 ASP n 1 409 THR n 1 410 LEU n 1 411 LYS n 1 412 GLY n 1 413 ILE n 1 414 GLN n 1 415 LEU n 1 416 GLY n 1 417 TRP n 1 418 SER n 1 419 GLY n 1 420 ASP n 1 421 VAL n 1 422 TYR n 1 423 GLN n 1 424 SER n 1 425 VAL n 1 426 ARG n 1 427 LEU n 1 428 ASN n 1 429 THR n 1 430 SER n 1 431 LEU n 1 432 TRP n 1 433 TYR n 1 434 THR n 1 435 ASN n 1 436 ALA n 1 437 ASN n 1 438 ASN n 1 439 SER n 1 440 ASP n 1 441 SER n 1 442 ASP n 1 443 ASP n 1 444 VAL n 1 445 GLY n 1 446 ALA n 1 447 SER n 1 448 ALA n 1 449 GLY n 1 450 ILE n 1 451 GLU n 1 452 ILE n 1 453 PRO n 1 454 PHE n 1 455 SER n 1 456 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'ESCHERICHIA COLI' _entity_src_nat.pdbx_ncbi_taxonomy_id 562 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain B44 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8GNN6_ECOLX _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q8GNN6 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YNK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 456 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8GNN6 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 479 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 477 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 D12 non-polymer . DODECANE ? 'C12 H26' 170.335 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEX non-polymer . HEXANE ? 'C6 H14' 86.175 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 OCT non-polymer . N-OCTANE ? 'C8 H18' 114.229 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YNK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.66 _exptl_crystal.density_percent_sol 73.61 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'SEE PAPER' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2010-08-31 _diffrn_detector.details 'TOROIDAL FOCUSSING MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111) CHANNEL-CUT MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97862 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength 0.97862 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YNK _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 59.37 _reflns.d_resolution_high 2.64 _reflns.number_obs 28226 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.90 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.64 _reflns_shell.d_res_low 2.74 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs 0.75 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.90 _reflns_shell.pdbx_redundancy 7.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YNK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 27740 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 59.37 _refine.ls_d_res_high 2.64 _refine.ls_percent_reflns_obs 99.15 _refine.ls_R_factor_obs 0.24656 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.24481 _refine.ls_R_factor_R_free 0.27905 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1483 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.911 _refine.correlation_coeff_Fo_to_Fc_free 0.887 _refine.B_iso_mean 50.671 _refine.aniso_B[1][1] 0.32 _refine.aniso_B[2][2] 0.14 _refine.aniso_B[3][3] -0.46 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.348 _refine.pdbx_overall_ESU_R_Free 0.273 _refine.overall_SU_ML 0.227 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 23.784 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3476 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 162 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 3652 _refine_hist.d_res_high 2.64 _refine_hist.d_res_low 59.37 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.020 ? 3722 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 2652 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.163 1.949 ? 4989 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.758 3.000 ? 6423 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.628 5.000 ? 439 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.000 24.317 ? 183 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.815 15.000 ? 515 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.878 15.000 ? 20 'X-RAY DIFFRACTION' ? r_chiral_restr 0.069 0.200 ? 484 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 4105 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 795 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.640 _refine_ls_shell.d_res_low 2.708 _refine_ls_shell.number_reflns_R_work 1883 _refine_ls_shell.R_factor_R_work 0.397 _refine_ls_shell.percent_reflns_obs 98.65 _refine_ls_shell.R_factor_R_free 0.460 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 92 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2YNK _struct.title 'Wzi, an Outer Membrane Protein Involved in Group 1 Capsule Assembly in Escherichia coli, is a Carbohydrate Binding Beta-Barrel' _struct.pdbx_descriptor WZI _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YNK _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'MEMBRANE PROTEIN, CAPSULE EXPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 4 ? O N N 2 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 7 ? ARG A 20 ? ASP A 30 ARG A 43 1 ? 14 HELX_P HELX_P2 2 GLN A 34 ? LYS A 43 ? GLN A 57 LYS A 66 1 ? 10 HELX_P HELX_P3 3 TYR A 48 ? LYS A 66 ? TYR A 71 LYS A 89 1 ? 19 HELX_P HELX_P4 4 THR A 184 ? GLY A 191 ? THR A 207 GLY A 214 5 ? 8 HELX_P HELX_P5 5 LEU A 279 ? GLY A 284 ? LEU A 300 GLY A 305 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 166 N ? ? ? 1_555 A ALA 165 C ? ? A MSE 189 A ALA 188 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 166 C ? ? ? 1_555 A ARG 167 N ? ? A MSE 189 A ARG 190 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? A MSE 169 N ? ? ? 1_555 A PRO 168 C ? ? A MSE 192 A PRO 191 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 169 C ? ? ? 1_555 A THR 170 N ? ? A MSE 192 A THR 193 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A MSE 174 N ? ? ? 1_555 A LEU 173 C ? ? A MSE 197 A LEU 196 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 174 C ? ? ? 1_555 A GLN 175 N ? ? A MSE 197 A GLN 198 1_555 ? ? ? ? ? ? ? 1.338 ? covale7 covale ? ? A MSE 202 N ? ? ? 1_555 A GLN 201 C ? ? A MSE 225 A GLN 224 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? A MSE 202 C ? ? ? 1_555 A ASN 203 N ? ? A MSE 225 A ASN 226 1_555 ? ? ? ? ? ? ? 1.331 ? covale9 covale ? ? A MSE 234 N ? ? ? 1_555 A ILE 233 C ? ? A MSE 257 A ILE 256 1_555 ? ? ? ? ? ? ? 1.328 ? covale10 covale ? ? A MSE 234 C ? ? ? 1_555 A GLN 235 N ? ? A MSE 257 A GLN 258 1_555 ? ? ? ? ? ? ? 1.328 ? covale11 covale ? ? A MSE 293 C ? ? ? 1_555 A ILE 294 N ? ? A MSE 314 A ILE 315 1_555 ? ? ? ? ? ? ? 1.331 ? covale12 covale ? ? A MSE 293 N ? ? ? 1_555 A GLN 292 C ? ? A MSE 314 A GLN 313 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale ? ? A MSE 307 C ? ? ? 1_555 A PHE 308 N ? ? A MSE 328 A PHE 329 1_555 ? ? ? ? ? ? ? 1.327 ? covale14 covale ? ? A MSE 307 N ? ? ? 1_555 A ASN 306 C ? ? A MSE 328 A ASN 327 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale ? ? A MSE 336 C ? ? ? 1_555 A SER 337 N ? ? A MSE 357 A SER 358 1_555 ? ? ? ? ? ? ? 1.327 ? covale16 covale ? ? A MSE 336 N ? ? ? 1_555 A ASN 335 C ? ? A MSE 357 A ASN 356 1_555 ? ? ? ? ? ? ? 1.330 ? covale17 covale ? ? A MSE 363 C ? ? ? 1_555 A GLY 364 N ? ? A MSE 384 A GLY 385 1_555 ? ? ? ? ? ? ? 1.328 ? covale18 covale ? ? A MSE 363 N ? ? ? 1_555 A ALA 362 C ? ? A MSE 384 A ALA 383 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 30 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 53 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 31 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 54 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.68 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 20 ? AD ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel AC 4 5 ? anti-parallel AC 5 6 ? anti-parallel AC 6 7 ? anti-parallel AC 7 8 ? anti-parallel AC 8 9 ? anti-parallel AC 9 10 ? anti-parallel AC 10 11 ? anti-parallel AC 11 12 ? anti-parallel AC 12 13 ? anti-parallel AC 13 14 ? anti-parallel AC 14 15 ? anti-parallel AC 15 16 ? anti-parallel AC 16 17 ? parallel AC 17 18 ? anti-parallel AD 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 3 ? VAL A 4 ? LEU A 26 VAL A 27 AA 2 LEU A 32 ? SER A 33 ? LEU A 55 SER A 56 AB 1 THR A 29 ? TRP A 30 ? THR A 52 TRP A 53 AB 2 TRP A 151 ? TRP A 152 ? TRP A 174 TRP A 175 AC 1 PHE A 69 ? SER A 76 ? PHE A 92 SER A 99 AC 2 VAL A 444 ? PHE A 454 ? VAL A 465 PHE A 475 AC 3 VAL A 425 ? ASN A 435 ? VAL A 446 ASN A 456 AC 4 ASP A 408 ? TYR A 422 ? ASP A 429 TYR A 443 AC 5 ARG A 383 ? VAL A 393 ? ARG A 404 VAL A 414 AC 6 GLN A 368 ? ILE A 377 ? GLN A 389 ILE A 398 AC 7 ALA A 322 ? ASP A 331 ? ALA A 343 ASP A 352 AC 8 LEU A 302 ? GLY A 317 ? LEU A 323 GLY A 338 AC 9 VAL A 287 ? SER A 299 ? VAL A 308 SER A 320 AC 10 ASN A 268 ? LYS A 278 ? ASN A 289 LYS A 299 AC 11 LEU A 226 ? TRP A 236 ? LEU A 249 TRP A 259 AC 12 LYS A 212 ? ILE A 223 ? LYS A 235 ILE A 246 AC 13 TRP A 193 ? GLN A 201 ? TRP A 216 GLN A 224 AC 14 THR A 170 ? ARG A 176 ? THR A 193 ARG A 199 AC 15 GLN A 141 ? GLN A 147 ? GLN A 164 GLN A 170 AC 16 TYR A 133 ? PHE A 138 ? TYR A 156 PHE A 161 AC 17 TRP A 107 ? GLU A 119 ? TRP A 130 GLU A 142 AC 18 ALA A 92 ? GLY A 104 ? ALA A 115 GLY A 127 AC 19 PHE A 69 ? SER A 76 ? PHE A 92 SER A 99 AD 1 TYR A 353 ? GLN A 354 ? TYR A 374 GLN A 375 AD 2 TYR A 357 ? PRO A 358 ? TYR A 378 PRO A 379 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 4 ? N VAL A 27 O LEU A 32 ? O LEU A 55 AB 1 2 N TRP A 30 ? N TRP A 53 O TRP A 151 ? O TRP A 174 AC 1 2 N THR A 75 ? N THR A 98 O ALA A 448 ? O ALA A 469 AC 2 3 N GLU A 451 ? N GLU A 472 O ARG A 426 ? O ARG A 447 AC 3 4 N ASN A 435 ? N ASN A 456 O LYS A 411 ? O LYS A 432 AC 4 5 N SER A 418 ? N SER A 439 O ARG A 383 ? O ARG A 404 AC 5 6 N LYS A 392 ? N LYS A 413 O GLN A 368 ? O GLN A 389 AC 6 7 N ILE A 377 ? N ILE A 398 O ALA A 322 ? O ALA A 343 AC 7 8 N ASP A 331 ? N ASP A 352 O PHE A 308 ? O PHE A 329 AC 8 9 N GLU A 313 ? N GLU A 334 O SER A 288 ? O SER A 309 AC 9 10 N GLY A 295 ? N GLY A 316 O ALA A 271 ? O ALA A 292 AC 10 11 N LYS A 276 ? N LYS A 297 O GLU A 227 ? O GLU A 250 AC 11 12 N TRP A 236 ? N TRP A 259 O LYS A 212 ? O LYS A 235 AC 12 13 N THR A 219 ? N THR A 242 O GLN A 194 ? O GLN A 217 AC 13 14 N GLN A 201 ? N GLN A 224 O THR A 170 ? O THR A 193 AC 14 15 N GLN A 175 ? N GLN A 198 O TRP A 142 ? O TRP A 165 AC 15 16 N PHE A 145 ? N PHE A 168 O GLY A 134 ? O GLY A 157 AC 16 17 N ALA A 135 ? N ALA A 158 O ASP A 108 ? O ASP A 131 AC 17 18 O GLY A 118 ? O GLY A 141 N ASP A 93 ? N ASP A 116 AD 1 2 N GLN A 354 ? N GLN A 375 O TYR A 357 ? O TYR A 378 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE OCT A 1001' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE D12 A 1002' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE D12 A 1003' AC4 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE D12 A 1004' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE D12 A 1005' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE D12 A 1006' AC7 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE D12 A 1007' AC8 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE D12 A 1008' AC9 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE OCT A 1010' BC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE OCT A 1014' BC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE HEX A 1017' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LEU A 111 ? LEU A 134 . ? 1_555 ? 2 AC1 3 GLN A 147 ? GLN A 170 . ? 1_555 ? 3 AC1 3 THR A 170 ? THR A 193 . ? 1_555 ? 4 AC2 2 ASP A 420 ? ASP A 441 . ? 1_555 ? 5 AC2 2 VAL A 421 ? VAL A 442 . ? 1_555 ? 6 AC3 2 GLY A 134 ? GLY A 157 . ? 1_555 ? 7 AC3 2 VAL A 136 ? VAL A 159 . ? 1_555 ? 8 AC4 1 GLN A 382 ? GLN A 403 . ? 4_566 ? 9 AC5 4 TRP A 318 ? TRP A 339 . ? 1_555 ? 10 AC5 4 ASP A 321 ? ASP A 342 . ? 1_555 ? 11 AC5 4 LEU A 376 ? LEU A 397 . ? 1_555 ? 12 AC5 4 TRP A 384 ? TRP A 405 . ? 1_555 ? 13 AC6 4 THR A 77 ? THR A 100 . ? 1_555 ? 14 AC6 4 TYR A 433 ? TYR A 454 . ? 4_566 ? 15 AC6 4 ASP A 443 ? ASP A 464 . ? 4_566 ? 16 AC6 4 VAL A 444 ? VAL A 465 . ? 4_566 ? 17 AC7 4 THR A 75 ? THR A 98 . ? 1_555 ? 18 AC7 4 SER A 76 ? SER A 99 . ? 1_555 ? 19 AC7 4 ALA A 446 ? ALA A 467 . ? 1_555 ? 20 AC7 4 SER A 447 ? SER A 468 . ? 1_555 ? 21 AC8 1 SER A 95 ? SER A 118 . ? 1_555 ? 22 AC9 4 PRO A 182 ? PRO A 205 . ? 1_555 ? 23 AC9 4 GLU A 183 ? GLU A 206 . ? 1_555 ? 24 AC9 4 THR A 184 ? THR A 207 . ? 1_555 ? 25 AC9 4 LEU A 187 ? LEU A 210 . ? 1_555 ? 26 BC1 1 ASN A 438 ? ASN A 459 . ? 2_765 ? 27 BC2 1 ASN A 435 ? ASN A 456 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YNK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YNK _atom_sites.fract_transf_matrix[1][1] 0.007317 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006575 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010522 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 24 24 ALA ALA A . n A 1 2 GLY 2 25 25 GLY GLY A . n A 1 3 LEU 3 26 26 LEU LEU A . n A 1 4 VAL 4 27 27 VAL VAL A . n A 1 5 VAL 5 28 28 VAL VAL A . n A 1 6 ASN 6 29 29 ASN ASN A . n A 1 7 ASP 7 30 30 ASP ASP A . n A 1 8 ASN 8 31 31 ASN ASN A . n A 1 9 ASP 9 32 32 ASP ASP A . n A 1 10 LEU 10 33 33 LEU LEU A . n A 1 11 ARG 11 34 34 ARG ARG A . n A 1 12 ASN 12 35 35 ASN ASN A . n A 1 13 ASP 13 36 36 ASP ASP A . n A 1 14 LEU 14 37 37 LEU LEU A . n A 1 15 ALA 15 38 38 ALA ALA A . n A 1 16 TRP 16 39 39 TRP TRP A . n A 1 17 LEU 17 40 40 LEU LEU A . n A 1 18 SER 18 41 41 SER SER A . n A 1 19 ASP 19 42 42 ASP ASP A . n A 1 20 ARG 20 43 43 ARG ARG A . n A 1 21 GLY 21 44 44 GLY GLY A . n A 1 22 VAL 22 45 45 VAL VAL A . n A 1 23 ILE 23 46 46 ILE ILE A . n A 1 24 HIS 24 47 47 HIS HIS A . n A 1 25 LEU 25 48 48 LEU LEU A . n A 1 26 SER 26 49 49 SER SER A . n A 1 27 LEU 27 50 50 LEU LEU A . n A 1 28 SER 28 51 51 SER SER A . n A 1 29 THR 29 52 52 THR THR A . n A 1 30 TRP 30 53 53 TRP TRP A . n A 1 31 PRO 31 54 54 PRO PRO A . n A 1 32 LEU 32 55 55 LEU LEU A . n A 1 33 SER 33 56 56 SER SER A . n A 1 34 GLN 34 57 57 GLN GLN A . n A 1 35 GLU 35 58 58 GLU GLU A . n A 1 36 GLU 36 59 59 GLU GLU A . n A 1 37 ILE 37 60 60 ILE ILE A . n A 1 38 ALA 38 61 61 ALA ALA A . n A 1 39 ARG 39 62 62 ARG ARG A . n A 1 40 ALA 40 63 63 ALA ALA A . n A 1 41 LEU 41 64 64 LEU LEU A . n A 1 42 LYS 42 65 65 LYS LYS A . n A 1 43 LYS 43 66 66 LYS LYS A . n A 1 44 ALA 44 67 67 ALA ALA A . n A 1 45 LYS 45 68 68 LYS LYS A . n A 1 46 PRO 46 69 69 PRO PRO A . n A 1 47 SER 47 70 70 SER SER A . n A 1 48 TYR 48 71 71 TYR TYR A . n A 1 49 SER 49 72 72 SER SER A . n A 1 50 SER 50 73 73 SER SER A . n A 1 51 GLU 51 74 74 GLU GLU A . n A 1 52 GLN 52 75 75 GLN GLN A . n A 1 53 VAL 53 76 76 VAL VAL A . n A 1 54 VAL 54 77 77 VAL VAL A . n A 1 55 LEU 55 78 78 LEU LEU A . n A 1 56 ALA 56 79 79 ALA ALA A . n A 1 57 ARG 57 80 80 ARG ARG A . n A 1 58 ILE 58 81 81 ILE ILE A . n A 1 59 ASN 59 82 82 ASN ASN A . n A 1 60 GLN 60 83 83 GLN GLN A . n A 1 61 ARG 61 84 84 ARG ARG A . n A 1 62 LEU 62 85 85 LEU LEU A . n A 1 63 SER 63 86 86 SER SER A . n A 1 64 ALA 64 87 87 ALA ALA A . n A 1 65 LEU 65 88 88 LEU LEU A . n A 1 66 LYS 66 89 89 LYS LYS A . n A 1 67 ALA 67 90 90 ALA ALA A . n A 1 68 ASP 68 91 91 ASP ASP A . n A 1 69 PHE 69 92 92 PHE PHE A . n A 1 70 ARG 70 93 93 ARG ARG A . n A 1 71 VAL 71 94 94 VAL VAL A . n A 1 72 THR 72 95 95 THR THR A . n A 1 73 GLY 73 96 96 GLY GLY A . n A 1 74 TYR 74 97 97 TYR TYR A . n A 1 75 THR 75 98 98 THR THR A . n A 1 76 SER 76 99 99 SER SER A . n A 1 77 THR 77 100 100 THR THR A . n A 1 78 ASP 78 101 101 ASP ASP A . n A 1 79 GLN 79 102 102 GLN GLN A . n A 1 80 PRO 80 103 103 PRO PRO A . n A 1 81 GLY 81 104 104 GLY GLY A . n A 1 82 THR 82 105 105 THR THR A . n A 1 83 PRO 83 106 106 PRO PRO A . n A 1 84 GLN 84 107 107 GLN GLN A . n A 1 85 GLY 85 108 108 GLY GLY A . n A 1 86 PHE 86 109 109 PHE PHE A . n A 1 87 GLY 87 110 110 GLY GLY A . n A 1 88 GLN 88 111 111 GLN GLN A . n A 1 89 THR 89 112 112 THR THR A . n A 1 90 GLN 90 113 113 GLN GLN A . n A 1 91 PRO 91 114 114 PRO PRO A . n A 1 92 ALA 92 115 115 ALA ALA A . n A 1 93 ASP 93 116 116 ASP ASP A . n A 1 94 ASN 94 117 117 ASN ASN A . n A 1 95 SER 95 118 118 SER SER A . n A 1 96 LEU 96 119 119 LEU LEU A . n A 1 97 GLY 97 120 120 GLY GLY A . n A 1 98 LEU 98 121 121 LEU LEU A . n A 1 99 ALA 99 122 122 ALA ALA A . n A 1 100 PHE 100 123 123 PHE PHE A . n A 1 101 ASN 101 124 124 ASN ASN A . n A 1 102 ASN 102 125 125 ASN ASN A . n A 1 103 SER 103 126 126 SER SER A . n A 1 104 GLY 104 127 127 GLY GLY A . n A 1 105 GLU 105 128 128 GLU GLU A . n A 1 106 TRP 106 129 129 TRP TRP A . n A 1 107 TRP 107 130 130 TRP TRP A . n A 1 108 ASP 108 131 131 ASP ASP A . n A 1 109 VAL 109 132 132 VAL VAL A . n A 1 110 HIS 110 133 133 HIS HIS A . n A 1 111 LEU 111 134 134 LEU LEU A . n A 1 112 GLN 112 135 135 GLN GLN A . n A 1 113 GLY 113 136 136 GLY GLY A . n A 1 114 ASN 114 137 137 ASN ASN A . n A 1 115 VAL 115 138 138 VAL VAL A . n A 1 116 GLU 116 139 139 GLU GLU A . n A 1 117 GLY 117 140 140 GLY GLY A . n A 1 118 GLY 118 141 141 GLY GLY A . n A 1 119 GLU 119 142 142 GLU GLU A . n A 1 120 ARG 120 143 143 ARG ARG A . n A 1 121 ILE 121 144 144 ILE ILE A . n A 1 122 SER 122 145 145 SER SER A . n A 1 123 ASN 123 146 146 ASN ASN A . n A 1 124 GLY 124 147 147 GLY GLY A . n A 1 125 SER 125 148 148 SER SER A . n A 1 126 ARG 126 149 149 ARG ARG A . n A 1 127 PHE 127 150 150 PHE PHE A . n A 1 128 ASN 128 151 151 ASN ASN A . n A 1 129 ALA 129 152 152 ALA ALA A . n A 1 130 ASN 130 153 153 ASN ASN A . n A 1 131 GLY 131 154 154 GLY GLY A . n A 1 132 ALA 132 155 155 ALA ALA A . n A 1 133 TYR 133 156 156 TYR TYR A . n A 1 134 GLY 134 157 157 GLY GLY A . n A 1 135 ALA 135 158 158 ALA ALA A . n A 1 136 VAL 136 159 159 VAL VAL A . n A 1 137 LYS 137 160 160 LYS LYS A . n A 1 138 PHE 138 161 161 PHE PHE A . n A 1 139 TRP 139 162 162 TRP TRP A . n A 1 140 ASN 140 163 163 ASN ASN A . n A 1 141 GLN 141 164 164 GLN GLN A . n A 1 142 TRP 142 165 165 TRP TRP A . n A 1 143 LEU 143 166 166 LEU LEU A . n A 1 144 SER 144 167 167 SER SER A . n A 1 145 PHE 145 168 168 PHE PHE A . n A 1 146 GLY 146 169 169 GLY GLY A . n A 1 147 GLN 147 170 170 GLN GLN A . n A 1 148 VAL 148 171 171 VAL VAL A . n A 1 149 PRO 149 172 172 PRO PRO A . n A 1 150 GLN 150 173 173 GLN GLN A . n A 1 151 TRP 151 174 174 TRP TRP A . n A 1 152 TRP 152 175 175 TRP TRP A . n A 1 153 GLY 153 176 176 GLY GLY A . n A 1 154 PRO 154 177 177 PRO PRO A . n A 1 155 GLY 155 178 178 GLY GLY A . n A 1 156 TYR 156 179 179 TYR TYR A . n A 1 157 GLU 157 180 180 GLU GLU A . n A 1 158 GLY 158 181 181 GLY GLY A . n A 1 159 SER 159 182 182 SER SER A . n A 1 160 LEU 160 183 183 LEU LEU A . n A 1 161 ILE 161 184 184 ILE ILE A . n A 1 162 ARG 162 185 185 ARG ARG A . n A 1 163 GLY 163 186 186 GLY GLY A . n A 1 164 ASP 164 187 187 ASP ASP A . n A 1 165 ALA 165 188 188 ALA ALA A . n A 1 166 MSE 166 189 189 MSE MSE A . n A 1 167 ARG 167 190 190 ARG ARG A . n A 1 168 PRO 168 191 191 PRO PRO A . n A 1 169 MSE 169 192 192 MSE MSE A . n A 1 170 THR 170 193 193 THR THR A . n A 1 171 GLY 171 194 194 GLY GLY A . n A 1 172 PHE 172 195 195 PHE PHE A . n A 1 173 LEU 173 196 196 LEU LEU A . n A 1 174 MSE 174 197 197 MSE MSE A . n A 1 175 GLN 175 198 198 GLN GLN A . n A 1 176 ARG 176 199 199 ARG ARG A . n A 1 177 ALA 177 200 200 ALA ALA A . n A 1 178 GLU 178 201 201 GLU GLU A . n A 1 179 GLN 179 202 202 GLN GLN A . n A 1 180 ALA 180 203 203 ALA ALA A . n A 1 181 ALA 181 204 204 ALA ALA A . n A 1 182 PRO 182 205 205 PRO PRO A . n A 1 183 GLU 183 206 206 GLU GLU A . n A 1 184 THR 184 207 207 THR THR A . n A 1 185 TRP 185 208 208 TRP TRP A . n A 1 186 TRP 186 209 209 TRP TRP A . n A 1 187 LEU 187 210 210 LEU LEU A . n A 1 188 ARG 188 211 211 ARG ARG A . n A 1 189 TRP 189 212 212 TRP TRP A . n A 1 190 VAL 190 213 213 VAL VAL A . n A 1 191 GLY 191 214 214 GLY GLY A . n A 1 192 PRO 192 215 215 PRO PRO A . n A 1 193 TRP 193 216 216 TRP TRP A . n A 1 194 GLN 194 217 217 GLN GLN A . n A 1 195 TYR 195 218 218 TYR TYR A . n A 1 196 GLN 196 219 219 GLN GLN A . n A 1 197 ILE 197 220 220 ILE ILE A . n A 1 198 SER 198 221 221 SER SER A . n A 1 199 ALA 199 222 222 ALA ALA A . n A 1 200 SER 200 223 223 SER SER A . n A 1 201 GLN 201 224 224 GLN GLN A . n A 1 202 MSE 202 225 225 MSE MSE A . n A 1 203 ASN 203 226 226 ASN ASN A . n A 1 204 GLN 204 227 227 GLN GLN A . n A 1 205 TYR 205 228 228 TYR TYR A . n A 1 206 ASN 206 229 229 ASN ASN A . n A 1 207 ALA 207 230 230 ALA ALA A . n A 1 208 VAL 208 231 231 VAL VAL A . n A 1 209 PRO 209 232 232 PRO PRO A . n A 1 210 HIS 210 233 233 HIS HIS A . n A 1 211 ALA 211 234 234 ALA ALA A . n A 1 212 LYS 212 235 235 LYS LYS A . n A 1 213 ILE 213 236 236 ILE ILE A . n A 1 214 ILE 214 237 237 ILE ILE A . n A 1 215 GLY 215 238 238 GLY GLY A . n A 1 216 GLY 216 239 239 GLY GLY A . n A 1 217 ARG 217 240 240 ARG ARG A . n A 1 218 PHE 218 241 241 PHE PHE A . n A 1 219 THR 219 242 242 THR THR A . n A 1 220 PHE 220 243 243 PHE PHE A . n A 1 221 SER 221 244 244 SER SER A . n A 1 222 PRO 222 245 245 PRO PRO A . n A 1 223 ILE 223 246 246 ILE ILE A . n A 1 224 GLN 224 247 247 GLN GLN A . n A 1 225 SER 225 248 248 SER SER A . n A 1 226 LEU 226 249 249 LEU LEU A . n A 1 227 GLU 227 250 250 GLU GLU A . n A 1 228 LEU 228 251 251 LEU LEU A . n A 1 229 GLY 229 252 252 GLY GLY A . n A 1 230 ALA 230 253 253 ALA ALA A . n A 1 231 SER 231 254 254 SER SER A . n A 1 232 ARG 232 255 255 ARG ARG A . n A 1 233 ILE 233 256 256 ILE ILE A . n A 1 234 MSE 234 257 257 MSE MSE A . n A 1 235 GLN 235 258 258 GLN GLN A . n A 1 236 TRP 236 259 259 TRP TRP A . n A 1 237 GLY 237 260 260 GLY GLY A . n A 1 238 GLY 238 261 261 GLY GLY A . n A 1 239 LYS 239 262 262 LYS LYS A . n A 1 240 GLY 240 263 263 GLY GLY A . n A 1 241 ARG 241 264 264 ARG ARG A . n A 1 242 PRO 242 265 265 PRO PRO A . n A 1 243 GLU 243 266 266 GLU GLU A . n A 1 244 SER 244 267 267 SER SER A . n A 1 245 LEU 245 268 268 LEU LEU A . n A 1 246 SER 246 269 269 SER SER A . n A 1 247 ASN 247 270 270 ASN ASN A . n A 1 248 PHE 248 271 271 PHE PHE A . n A 1 249 TRP 249 272 272 TRP TRP A . n A 1 250 ASP 250 273 273 ASP ASP A . n A 1 251 GLY 251 274 274 GLY GLY A . n A 1 252 LEU 252 274 ? ? ? A A n A 1 253 THR 253 274 ? ? ? A B n A 1 254 GLY 254 275 ? ? ? A . n A 1 255 LYS 255 276 ? ? ? A . n A 1 256 ASP 256 277 ? ? ? A . n A 1 257 ASN 257 278 ? ? ? A . n A 1 258 THR 258 279 ? ? ? A . n A 1 259 ALA 259 280 ? ? ? A . n A 1 260 ALA 260 281 ? ? ? A . n A 1 261 ASN 261 282 ? ? ? A . n A 1 262 ASP 262 283 ? ? ? A . n A 1 263 PRO 263 284 ? ? ? A . n A 1 264 ASN 264 285 ? ? ? A . n A 1 265 GLU 265 286 ? ? ? A . n A 1 266 PRO 266 287 ? ? ? A . n A 1 267 GLY 267 288 288 GLY GLY A . n A 1 268 ASN 268 289 289 ASN ASN A . n A 1 269 GLN 269 290 290 GLN GLN A . n A 1 270 LEU 270 291 291 LEU LEU A . n A 1 271 ALA 271 292 292 ALA ALA A . n A 1 272 GLY 272 293 293 GLY GLY A . n A 1 273 PHE 273 294 294 PHE PHE A . n A 1 274 ASP 274 295 295 ASP ASP A . n A 1 275 PHE 275 296 296 PHE PHE A . n A 1 276 LYS 276 297 297 LYS LYS A . n A 1 277 PHE 277 298 298 PHE PHE A . n A 1 278 LYS 278 299 299 LYS LYS A . n A 1 279 LEU 279 300 300 LEU LEU A . n A 1 280 GLU 280 301 301 GLU GLU A . n A 1 281 PRO 281 302 302 PRO PRO A . n A 1 282 THR 282 303 303 THR THR A . n A 1 283 LEU 283 304 304 LEU LEU A . n A 1 284 GLY 284 305 305 GLY GLY A . n A 1 285 TRP 285 306 306 TRP TRP A . n A 1 286 PRO 286 307 307 PRO PRO A . n A 1 287 VAL 287 308 308 VAL VAL A . n A 1 288 SER 288 309 309 SER SER A . n A 1 289 PHE 289 310 310 PHE PHE A . n A 1 290 TYR 290 311 311 TYR TYR A . n A 1 291 GLY 291 312 312 GLY GLY A . n A 1 292 GLN 292 313 313 GLN GLN A . n A 1 293 MSE 293 314 314 MSE MSE A . n A 1 294 ILE 294 315 315 ILE ILE A . n A 1 295 GLY 295 316 316 GLY GLY A . n A 1 296 GLU 296 317 317 GLU GLU A . n A 1 297 ASP 297 318 318 ASP ASP A . n A 1 298 GLU 298 319 319 GLU GLU A . n A 1 299 SER 299 320 320 SER SER A . n A 1 300 GLY 300 321 321 GLY GLY A . n A 1 301 PHE 301 322 322 PHE PHE A . n A 1 302 LEU 302 323 323 LEU LEU A . n A 1 303 PRO 303 324 324 PRO PRO A . n A 1 304 SER 304 325 325 SER SER A . n A 1 305 ALA 305 326 326 ALA ALA A . n A 1 306 ASN 306 327 327 ASN ASN A . n A 1 307 MSE 307 328 328 MSE MSE A . n A 1 308 PHE 308 329 329 PHE PHE A . n A 1 309 LEU 309 330 330 LEU LEU A . n A 1 310 GLY 310 331 331 GLY GLY A . n A 1 311 GLY 311 332 332 GLY GLY A . n A 1 312 ILE 312 333 333 ILE ILE A . n A 1 313 GLU 313 334 334 GLU GLU A . n A 1 314 GLY 314 335 335 GLY GLY A . n A 1 315 HIS 315 336 336 HIS HIS A . n A 1 316 HIS 316 337 337 HIS HIS A . n A 1 317 GLY 317 338 338 GLY GLY A . n A 1 318 TRP 318 339 339 TRP TRP A . n A 1 319 GLY 319 340 340 GLY GLY A . n A 1 320 LYS 320 341 341 LYS LYS A . n A 1 321 ASP 321 342 342 ASP ASP A . n A 1 322 ALA 322 343 343 ALA ALA A . n A 1 323 VAL 323 344 344 VAL VAL A . n A 1 324 ASN 324 345 345 ASN ASN A . n A 1 325 TRP 325 346 346 TRP TRP A . n A 1 326 TYR 326 347 347 TYR TYR A . n A 1 327 LEU 327 348 348 LEU LEU A . n A 1 328 GLU 328 349 349 GLU GLU A . n A 1 329 ALA 329 350 350 ALA ALA A . n A 1 330 HIS 330 351 351 HIS HIS A . n A 1 331 ASP 331 352 352 ASP ASP A . n A 1 332 THR 332 353 353 THR THR A . n A 1 333 ARG 333 354 354 ARG ARG A . n A 1 334 THR 334 355 355 THR THR A . n A 1 335 ASN 335 356 356 ASN ASN A . n A 1 336 MSE 336 357 357 MSE MSE A . n A 1 337 SER 337 358 358 SER SER A . n A 1 338 ARG 338 359 359 ARG ARG A . n A 1 339 THR 339 360 360 THR THR A . n A 1 340 ASN 340 361 361 ASN ASN A . n A 1 341 TYR 341 362 362 TYR TYR A . n A 1 342 SER 342 363 363 SER SER A . n A 1 343 TYR 343 364 364 TYR TYR A . n A 1 344 THR 344 365 365 THR THR A . n A 1 345 HIS 345 366 366 HIS HIS A . n A 1 346 HIS 346 367 367 HIS HIS A . n A 1 347 ILE 347 368 368 ILE ILE A . n A 1 348 TYR 348 369 369 TYR TYR A . n A 1 349 LYS 349 370 370 LYS LYS A . n A 1 350 ASP 350 371 371 ASP ASP A . n A 1 351 GLY 351 372 372 GLY GLY A . n A 1 352 TYR 352 373 373 TYR TYR A . n A 1 353 TYR 353 374 374 TYR TYR A . n A 1 354 GLN 354 375 375 GLN GLN A . n A 1 355 GLN 355 376 376 GLN GLN A . n A 1 356 GLY 356 377 377 GLY GLY A . n A 1 357 TYR 357 378 378 TYR TYR A . n A 1 358 PRO 358 379 379 PRO PRO A . n A 1 359 LEU 359 380 380 LEU LEU A . n A 1 360 GLY 360 381 381 GLY GLY A . n A 1 361 ASP 361 382 382 ASP ASP A . n A 1 362 ALA 362 383 383 ALA ALA A . n A 1 363 MSE 363 384 384 MSE MSE A . n A 1 364 GLY 364 385 385 GLY GLY A . n A 1 365 GLY 365 386 386 GLY GLY A . n A 1 366 ASP 366 387 387 ASP ASP A . n A 1 367 GLY 367 388 388 GLY GLY A . n A 1 368 GLN 368 389 389 GLN GLN A . n A 1 369 LEU 369 390 390 LEU LEU A . n A 1 370 VAL 370 391 391 VAL VAL A . n A 1 371 ALA 371 392 392 ALA ALA A . n A 1 372 GLY 372 393 393 GLY GLY A . n A 1 373 LYS 373 394 394 LYS LYS A . n A 1 374 VAL 374 395 395 VAL VAL A . n A 1 375 GLU 375 396 396 GLU GLU A . n A 1 376 LEU 376 397 397 LEU LEU A . n A 1 377 ILE 377 398 398 ILE ILE A . n A 1 378 THR 378 399 399 THR THR A . n A 1 379 GLU 379 400 400 GLU GLU A . n A 1 380 ASP 380 401 401 ASP ASP A . n A 1 381 ASN 381 402 402 ASN ASN A . n A 1 382 GLN 382 403 403 GLN GLN A . n A 1 383 ARG 383 404 404 ARG ARG A . n A 1 384 TRP 384 405 405 TRP TRP A . n A 1 385 SER 385 406 406 SER SER A . n A 1 386 THR 386 407 407 THR THR A . n A 1 387 ARG 387 408 408 ARG ARG A . n A 1 388 LEU 388 409 409 LEU LEU A . n A 1 389 VAL 389 410 410 VAL VAL A . n A 1 390 TYR 390 411 411 TYR TYR A . n A 1 391 ALA 391 412 412 ALA ALA A . n A 1 392 LYS 392 413 413 LYS LYS A . n A 1 393 VAL 393 414 414 VAL VAL A . n A 1 394 ASN 394 415 415 ASN ASN A . n A 1 395 PRO 395 416 416 PRO PRO A . n A 1 396 GLU 396 417 417 GLU GLU A . n A 1 397 ASN 397 418 418 ASN ASN A . n A 1 398 GLN 398 419 419 GLN GLN A . n A 1 399 SER 399 420 420 SER SER A . n A 1 400 ILE 400 421 421 ILE ILE A . n A 1 401 ASN 401 422 422 ASN ASN A . n A 1 402 LYS 402 423 423 LYS LYS A . n A 1 403 ALA 403 424 424 ALA ALA A . n A 1 404 PHE 404 425 425 PHE PHE A . n A 1 405 PRO 405 426 426 PRO PRO A . n A 1 406 HIS 406 427 427 HIS HIS A . n A 1 407 ALA 407 428 428 ALA ALA A . n A 1 408 ASP 408 429 429 ASP ASP A . n A 1 409 THR 409 430 430 THR THR A . n A 1 410 LEU 410 431 431 LEU LEU A . n A 1 411 LYS 411 432 432 LYS LYS A . n A 1 412 GLY 412 433 433 GLY GLY A . n A 1 413 ILE 413 434 434 ILE ILE A . n A 1 414 GLN 414 435 435 GLN GLN A . n A 1 415 LEU 415 436 436 LEU LEU A . n A 1 416 GLY 416 437 437 GLY GLY A . n A 1 417 TRP 417 438 438 TRP TRP A . n A 1 418 SER 418 439 439 SER SER A . n A 1 419 GLY 419 440 440 GLY GLY A . n A 1 420 ASP 420 441 441 ASP ASP A . n A 1 421 VAL 421 442 442 VAL VAL A . n A 1 422 TYR 422 443 443 TYR TYR A . n A 1 423 GLN 423 444 444 GLN GLN A . n A 1 424 SER 424 445 445 SER SER A . n A 1 425 VAL 425 446 446 VAL VAL A . n A 1 426 ARG 426 447 447 ARG ARG A . n A 1 427 LEU 427 448 448 LEU LEU A . n A 1 428 ASN 428 449 449 ASN ASN A . n A 1 429 THR 429 450 450 THR THR A . n A 1 430 SER 430 451 451 SER SER A . n A 1 431 LEU 431 452 452 LEU LEU A . n A 1 432 TRP 432 453 453 TRP TRP A . n A 1 433 TYR 433 454 454 TYR TYR A . n A 1 434 THR 434 455 455 THR THR A . n A 1 435 ASN 435 456 456 ASN ASN A . n A 1 436 ALA 436 457 457 ALA ALA A . n A 1 437 ASN 437 458 458 ASN ASN A . n A 1 438 ASN 438 459 459 ASN ASN A . n A 1 439 SER 439 460 460 SER SER A . n A 1 440 ASP 440 461 461 ASP ASP A . n A 1 441 SER 441 462 462 SER SER A . n A 1 442 ASP 442 463 463 ASP ASP A . n A 1 443 ASP 443 464 464 ASP ASP A . n A 1 444 VAL 444 465 465 VAL VAL A . n A 1 445 GLY 445 466 466 GLY GLY A . n A 1 446 ALA 446 467 467 ALA ALA A . n A 1 447 SER 447 468 468 SER SER A . n A 1 448 ALA 448 469 469 ALA ALA A . n A 1 449 GLY 449 470 470 GLY GLY A . n A 1 450 ILE 450 471 471 ILE ILE A . n A 1 451 GLU 451 472 472 GLU GLU A . n A 1 452 ILE 452 473 473 ILE ILE A . n A 1 453 PRO 453 474 474 PRO PRO A . n A 1 454 PHE 454 475 475 PHE PHE A . n A 1 455 SER 455 476 476 SER SER A . n A 1 456 LEU 456 477 477 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OCT 1 1001 1001 OCT OCT A . C 3 D12 1 1002 1002 D12 D12 A . D 3 D12 1 1003 1003 D12 D12 A . E 3 D12 1 1004 1004 D12 D12 A . F 3 D12 1 1005 1005 D12 D12 A . G 3 D12 1 1006 1006 D12 D12 A . H 3 D12 1 1007 1007 D12 D12 A . I 3 D12 1 1008 1008 D12 D12 A . J 2 OCT 1 1009 1009 OCT OCT A . K 2 OCT 1 1010 1010 OCT OCT A . L 2 OCT 1 1011 1011 OCT OCT A . M 2 OCT 1 1012 1012 OCT OCT A . N 4 HEX 1 1013 1013 HEX HEX A . O 2 OCT 1 1014 1014 OCT OCT A . P 4 HEX 1 1015 1015 HEX HEX A . Q 4 HEX 1 1016 1016 HEX HEX A . R 4 HEX 1 1017 1017 HEX HEX A . S 4 HEX 1 1018 1018 HEX HEX A . T 5 HOH 1 2001 2001 HOH HOH A . T 5 HOH 2 2002 2002 HOH HOH A . T 5 HOH 3 2003 2003 HOH HOH A . T 5 HOH 4 2004 2004 HOH HOH A . T 5 HOH 5 2005 2005 HOH HOH A . T 5 HOH 6 2006 2006 HOH HOH A . T 5 HOH 7 2007 2007 HOH HOH A . T 5 HOH 8 2008 2008 HOH HOH A . T 5 HOH 9 2009 2009 HOH HOH A . T 5 HOH 10 2010 2010 HOH HOH A . T 5 HOH 11 2011 2011 HOH HOH A . T 5 HOH 12 2012 2012 HOH HOH A . T 5 HOH 13 2013 2013 HOH HOH A . T 5 HOH 14 2014 2014 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 166 A MSE 189 ? MET SELENOMETHIONINE 2 A MSE 169 A MSE 192 ? MET SELENOMETHIONINE 3 A MSE 174 A MSE 197 ? MET SELENOMETHIONINE 4 A MSE 202 A MSE 225 ? MET SELENOMETHIONINE 5 A MSE 234 A MSE 257 ? MET SELENOMETHIONINE 6 A MSE 293 A MSE 314 ? MET SELENOMETHIONINE 7 A MSE 307 A MSE 328 ? MET SELENOMETHIONINE 8 A MSE 336 A MSE 357 ? MET SELENOMETHIONINE 9 A MSE 363 A MSE 384 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-15 2 'Structure model' 1 1 2013-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 108.5910 71.0190 24.2720 0.0189 0.1154 0.2102 -0.0273 0.0112 0.0184 0.6318 0.8650 1.7917 -0.1793 -0.3362 0.0317 -0.0010 -0.0318 0.1410 0.0124 0.0858 0.1345 -0.0291 -0.2481 -0.0849 'X-RAY DIFFRACTION' 2 ? refined 112.6500 59.7020 13.3600 0.0461 0.1518 0.1866 -0.0682 -0.0132 -0.0047 0.5725 0.8396 1.1300 -0.3196 0.0224 -0.0935 -0.0003 0.1292 -0.0292 -0.1097 0.0864 0.0756 0.1610 -0.1491 -0.0862 'X-RAY DIFFRACTION' 3 ? refined 129.1700 57.0910 3.8290 0.2250 0.2428 0.3206 -0.0420 -0.0092 0.0015 7.3016 0.6088 6.5168 -1.9747 -2.3111 1.2524 -0.0788 0.5190 -0.1340 0.0326 -0.1536 0.0850 0.4127 -0.3369 0.2325 'X-RAY DIFFRACTION' 4 ? refined 110.9460 49.3320 26.8370 0.2024 0.0878 0.2143 -0.0731 0.0087 0.0028 7.8491 1.0467 4.9438 0.8662 -5.0036 -0.9190 -0.3065 0.0543 -0.7004 -0.0026 0.0011 0.0412 0.5115 -0.2717 0.3054 'X-RAY DIFFRACTION' 5 ? refined 125.3730 43.8520 14.4490 0.5704 0.3477 0.4740 0.0570 0.0840 0.0725 22.3070 17.4085 9.8627 16.4441 14.1052 12.5793 0.2142 0.2288 -0.8367 0.2466 -0.2155 0.6690 0.2940 0.0229 0.0013 'X-RAY DIFFRACTION' 6 ? refined 116.1120 53.4050 32.9870 0.1585 0.1000 0.1745 -0.0772 0.0000 0.0505 5.7037 1.9588 3.5558 -1.7285 -2.4335 1.1960 -0.0373 -0.4022 -0.3021 -0.0627 0.0389 0.1220 0.3156 0.0954 -0.0017 'X-RAY DIFFRACTION' 7 ? refined 123.4790 65.1980 32.9010 0.0180 0.1232 0.1908 -0.0184 -0.0036 -0.0130 1.0444 0.5107 2.4157 0.0815 -0.7105 0.3225 -0.0246 -0.2160 0.0156 0.0326 0.0770 -0.0668 0.1170 0.1175 -0.0525 'X-RAY DIFFRACTION' 8 ? refined 117.2560 79.4410 32.7590 0.0263 0.0577 0.2344 -0.0323 0.0379 -0.0402 5.9251 3.1464 5.6783 -2.9549 3.2674 -1.3956 0.0071 -0.2501 0.3058 0.0604 -0.0332 -0.0082 0.0828 -0.3201 0.0261 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 23 ? ? A 153 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 154 ? ? A 254 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 255 ? ? A 274 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 286 ? ? A 316 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 317 ? ? A 322 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 323 ? ? A 359 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 360 ? ? A 459 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 460 ? ? A 477 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0117 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 SHELXCDE phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AC" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 18-STRANDED BARREL THIS IS REPRESENTED BY A 19-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 29 ? ? -43.26 106.04 2 1 GLN A 170 ? ? -114.17 79.11 3 1 ALA A 188 ? ? -105.40 56.60 4 1 MSE A 189 ? ? 170.89 161.46 5 1 ALA A 200 ? ? -83.45 -74.74 6 1 VAL A 231 ? ? -152.75 81.92 7 1 PHE A 271 ? ? -67.06 84.02 8 1 TRP A 339 ? ? -107.91 -105.72 9 1 SER A 358 ? ? -160.14 -61.36 10 1 ILE A 368 ? ? -91.07 -62.33 11 1 GLN A 444 ? ? 39.29 -106.43 12 1 ASN A 459 ? ? -157.93 56.54 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 274 A A LEU 252 2 1 Y 1 A THR 274 B A THR 253 3 1 Y 1 A GLY 275 ? A GLY 254 4 1 Y 1 A LYS 276 ? A LYS 255 5 1 Y 1 A ASP 277 ? A ASP 256 6 1 Y 1 A ASN 278 ? A ASN 257 7 1 Y 1 A THR 279 ? A THR 258 8 1 Y 1 A ALA 280 ? A ALA 259 9 1 Y 1 A ALA 281 ? A ALA 260 10 1 Y 1 A ASN 282 ? A ASN 261 11 1 Y 1 A ASP 283 ? A ASP 262 12 1 Y 1 A PRO 284 ? A PRO 263 13 1 Y 1 A ASN 285 ? A ASN 264 14 1 Y 1 A GLU 286 ? A GLU 265 15 1 Y 1 A PRO 287 ? A PRO 266 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 N-OCTANE OCT 3 DODECANE D12 4 HEXANE HEX 5 water HOH #