HEADER MEMBRANE PROTEIN 16-OCT-12 2YNK TITLE WZI, AN OUTER MEMBRANE PROTEIN INVOLVED IN GROUP 1 CAPSULE ASSEMBLY TITLE 2 IN ESCHERICHIA COLI, IS A CARBOHYDRATE BINDING BETA-BARREL COMPND MOL_ID: 1; COMPND 2 MOLECULE: WZI; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: B44 KEYWDS MEMBRANE PROTEIN, CAPSULE EXPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.R.BUSHELL,I.L.MAINPRIZE,M.A.WEAR,H.LOU,L.KONG,B.DAVIS,H.BAYLEY, AUTHOR 2 C.WHITFIELD,J.H.NAISMITH REVDAT 2 29-MAY-13 2YNK 1 JRNL REVDAT 1 15-MAY-13 2YNK 0 JRNL AUTH S.R.BUSHELL,I.L.MAINPRIZE,M.A.WEAR,H.LOU,C.WHITFIELD, JRNL AUTH 2 J.H.NAISMITH JRNL TITL WZI IS AN OUTER MEMBRANE LECTIN THAT UNDERPINS GROUP 1 JRNL TITL 2 CAPSULE ASSEMBLY IN ESCHERICHIA COLI. JRNL REF STRUCTURE V. 21 844 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23623732 JRNL DOI 10.1016/J.STR.2013.03.010 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.15 REMARK 3 NUMBER OF REFLECTIONS : 27740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.24656 REMARK 3 R VALUE (WORKING SET) : 0.24481 REMARK 3 FREE R VALUE : 0.27905 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1483 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.640 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.708 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1883 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.397 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3476 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 162 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.671 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32 REMARK 3 B22 (A**2) : 0.14 REMARK 3 B33 (A**2) : -0.46 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.348 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.784 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3722 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2652 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4989 ; 1.163 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6423 ; 0.758 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 6.628 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;37.000 ;24.317 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;14.815 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.878 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 484 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4105 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 795 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 108.5910 71.0190 24.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.0189 T22: 0.1154 REMARK 3 T33: 0.2102 T12: -0.0273 REMARK 3 T13: 0.0112 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.6318 L22: 0.8650 REMARK 3 L33: 1.7917 L12: -0.1793 REMARK 3 L13: -0.3362 L23: 0.0317 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.0318 S13: 0.1410 REMARK 3 S21: 0.0124 S22: 0.0858 S23: 0.1345 REMARK 3 S31: -0.0291 S32: -0.2481 S33: -0.0849 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 154 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 112.6500 59.7020 13.3600 REMARK 3 T TENSOR REMARK 3 T11: 0.0461 T22: 0.1518 REMARK 3 T33: 0.1866 T12: -0.0682 REMARK 3 T13: -0.0132 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5725 L22: 0.8396 REMARK 3 L33: 1.1300 L12: -0.3196 REMARK 3 L13: 0.0224 L23: -0.0935 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.1292 S13: -0.0292 REMARK 3 S21: -0.1097 S22: 0.0864 S23: 0.0756 REMARK 3 S31: 0.1610 S32: -0.1491 S33: -0.0862 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 255 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): 129.1700 57.0910 3.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.2250 T22: 0.2428 REMARK 3 T33: 0.3206 T12: -0.0420 REMARK 3 T13: -0.0092 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 7.3016 L22: 0.6088 REMARK 3 L33: 6.5168 L12: -1.9747 REMARK 3 L13: -2.3111 L23: 1.2524 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: 0.5190 S13: -0.1340 REMARK 3 S21: 0.0326 S22: -0.1536 S23: 0.0850 REMARK 3 S31: 0.4127 S32: -0.3369 S33: 0.2325 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 286 A 316 REMARK 3 ORIGIN FOR THE GROUP (A): 110.9460 49.3320 26.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.2024 T22: 0.0878 REMARK 3 T33: 0.2143 T12: -0.0731 REMARK 3 T13: 0.0087 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 7.8491 L22: 1.0467 REMARK 3 L33: 4.9438 L12: 0.8662 REMARK 3 L13: -5.0036 L23: -0.9190 REMARK 3 S TENSOR REMARK 3 S11: -0.3065 S12: 0.0543 S13: -0.7004 REMARK 3 S21: -0.0026 S22: 0.0011 S23: 0.0412 REMARK 3 S31: 0.5115 S32: -0.2717 S33: 0.3054 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 317 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): 125.3730 43.8520 14.4490 REMARK 3 T TENSOR REMARK 3 T11: 0.5704 T22: 0.3477 REMARK 3 T33: 0.4740 T12: 0.0570 REMARK 3 T13: 0.0840 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 22.3070 L22: 17.4085 REMARK 3 L33: 9.8627 L12: 16.4441 REMARK 3 L13: 14.1052 L23: 12.5793 REMARK 3 S TENSOR REMARK 3 S11: 0.2142 S12: 0.2288 S13: -0.8367 REMARK 3 S21: 0.2466 S22: -0.2155 S23: 0.6690 REMARK 3 S31: 0.2940 S32: 0.0229 S33: 0.0013 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 323 A 359 REMARK 3 ORIGIN FOR THE GROUP (A): 116.1120 53.4050 32.9870 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.1000 REMARK 3 T33: 0.1745 T12: -0.0772 REMARK 3 T13: 0.0000 T23: 0.0505 REMARK 3 L TENSOR REMARK 3 L11: 5.7037 L22: 1.9588 REMARK 3 L33: 3.5558 L12: -1.7285 REMARK 3 L13: -2.4335 L23: 1.1960 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.4022 S13: -0.3021 REMARK 3 S21: -0.0627 S22: 0.0389 S23: 0.1220 REMARK 3 S31: 0.3156 S32: 0.0954 S33: -0.0017 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 360 A 459 REMARK 3 ORIGIN FOR THE GROUP (A): 123.4790 65.1980 32.9010 REMARK 3 T TENSOR REMARK 3 T11: 0.0180 T22: 0.1232 REMARK 3 T33: 0.1908 T12: -0.0184 REMARK 3 T13: -0.0036 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.0444 L22: 0.5107 REMARK 3 L33: 2.4157 L12: 0.0815 REMARK 3 L13: -0.7105 L23: 0.3225 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.2160 S13: 0.0156 REMARK 3 S21: 0.0326 S22: 0.0770 S23: -0.0668 REMARK 3 S31: 0.1170 S32: 0.1175 S33: -0.0525 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 460 A 477 REMARK 3 ORIGIN FOR THE GROUP (A): 117.2560 79.4410 32.7590 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.0577 REMARK 3 T33: 0.2344 T12: -0.0323 REMARK 3 T13: 0.0379 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 5.9251 L22: 3.1464 REMARK 3 L33: 5.6783 L12: -2.9549 REMARK 3 L13: 3.2674 L23: -1.3956 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.2501 S13: 0.3058 REMARK 3 S21: 0.0604 S22: -0.0332 S23: -0.0082 REMARK 3 S31: 0.0828 S32: -0.3201 S33: 0.0261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YNK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-OCT-12. REMARK 100 THE PDBE ID CODE IS EBI-54489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97862 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : TOROIDAL FOCUSSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.64 REMARK 200 RESOLUTION RANGE LOW (A) : 59.37 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 10.0 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.4 REMARK 200 R MERGE FOR SHELL (I) : 0.75 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCDE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEE PAPER REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 68.33000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.04000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 68.33000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.04000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 68.33000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.04000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 68.33000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.04000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 274A REMARK 465 THR A 274B REMARK 465 GLY A 275 REMARK 465 LYS A 276 REMARK 465 ASP A 277 REMARK 465 ASN A 278 REMARK 465 THR A 279 REMARK 465 ALA A 280 REMARK 465 ALA A 281 REMARK 465 ASN A 282 REMARK 465 ASP A 283 REMARK 465 PRO A 284 REMARK 465 ASN A 285 REMARK 465 GLU A 286 REMARK 465 PRO A 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 106.04 -43.26 REMARK 500 GLN A 170 79.11 -114.17 REMARK 500 ALA A 188 56.60 -105.40 REMARK 500 MSE A 189 161.46 170.89 REMARK 500 ALA A 200 -74.74 -83.45 REMARK 500 VAL A 231 81.92 -152.75 REMARK 500 PHE A 271 84.02 -67.06 REMARK 500 TRP A 339 -105.72 -107.91 REMARK 500 SER A 358 -61.36 -160.14 REMARK 500 ILE A 368 -62.33 -91.07 REMARK 500 GLN A 444 -106.43 39.29 REMARK 500 ASN A 459 56.54 -157.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AC" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 18-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 19-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OCT A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OCT A1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OCT A1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEX A1017 DBREF 2YNK A 24 477 UNP Q8GNN6 Q8GNN6_ECOLX 24 479 SEQRES 1 A 456 ALA GLY LEU VAL VAL ASN ASP ASN ASP LEU ARG ASN ASP SEQRES 2 A 456 LEU ALA TRP LEU SER ASP ARG GLY VAL ILE HIS LEU SER SEQRES 3 A 456 LEU SER THR TRP PRO LEU SER GLN GLU GLU ILE ALA ARG SEQRES 4 A 456 ALA LEU LYS LYS ALA LYS PRO SER TYR SER SER GLU GLN SEQRES 5 A 456 VAL VAL LEU ALA ARG ILE ASN GLN ARG LEU SER ALA LEU SEQRES 6 A 456 LYS ALA ASP PHE ARG VAL THR GLY TYR THR SER THR ASP SEQRES 7 A 456 GLN PRO GLY THR PRO GLN GLY PHE GLY GLN THR GLN PRO SEQRES 8 A 456 ALA ASP ASN SER LEU GLY LEU ALA PHE ASN ASN SER GLY SEQRES 9 A 456 GLU TRP TRP ASP VAL HIS LEU GLN GLY ASN VAL GLU GLY SEQRES 10 A 456 GLY GLU ARG ILE SER ASN GLY SER ARG PHE ASN ALA ASN SEQRES 11 A 456 GLY ALA TYR GLY ALA VAL LYS PHE TRP ASN GLN TRP LEU SEQRES 12 A 456 SER PHE GLY GLN VAL PRO GLN TRP TRP GLY PRO GLY TYR SEQRES 13 A 456 GLU GLY SER LEU ILE ARG GLY ASP ALA MSE ARG PRO MSE SEQRES 14 A 456 THR GLY PHE LEU MSE GLN ARG ALA GLU GLN ALA ALA PRO SEQRES 15 A 456 GLU THR TRP TRP LEU ARG TRP VAL GLY PRO TRP GLN TYR SEQRES 16 A 456 GLN ILE SER ALA SER GLN MSE ASN GLN TYR ASN ALA VAL SEQRES 17 A 456 PRO HIS ALA LYS ILE ILE GLY GLY ARG PHE THR PHE SER SEQRES 18 A 456 PRO ILE GLN SER LEU GLU LEU GLY ALA SER ARG ILE MSE SEQRES 19 A 456 GLN TRP GLY GLY LYS GLY ARG PRO GLU SER LEU SER ASN SEQRES 20 A 456 PHE TRP ASP GLY LEU THR GLY LYS ASP ASN THR ALA ALA SEQRES 21 A 456 ASN ASP PRO ASN GLU PRO GLY ASN GLN LEU ALA GLY PHE SEQRES 22 A 456 ASP PHE LYS PHE LYS LEU GLU PRO THR LEU GLY TRP PRO SEQRES 23 A 456 VAL SER PHE TYR GLY GLN MSE ILE GLY GLU ASP GLU SER SEQRES 24 A 456 GLY PHE LEU PRO SER ALA ASN MSE PHE LEU GLY GLY ILE SEQRES 25 A 456 GLU GLY HIS HIS GLY TRP GLY LYS ASP ALA VAL ASN TRP SEQRES 26 A 456 TYR LEU GLU ALA HIS ASP THR ARG THR ASN MSE SER ARG SEQRES 27 A 456 THR ASN TYR SER TYR THR HIS HIS ILE TYR LYS ASP GLY SEQRES 28 A 456 TYR TYR GLN GLN GLY TYR PRO LEU GLY ASP ALA MSE GLY SEQRES 29 A 456 GLY ASP GLY GLN LEU VAL ALA GLY LYS VAL GLU LEU ILE SEQRES 30 A 456 THR GLU ASP ASN GLN ARG TRP SER THR ARG LEU VAL TYR SEQRES 31 A 456 ALA LYS VAL ASN PRO GLU ASN GLN SER ILE ASN LYS ALA SEQRES 32 A 456 PHE PRO HIS ALA ASP THR LEU LYS GLY ILE GLN LEU GLY SEQRES 33 A 456 TRP SER GLY ASP VAL TYR GLN SER VAL ARG LEU ASN THR SEQRES 34 A 456 SER LEU TRP TYR THR ASN ALA ASN ASN SER ASP SER ASP SEQRES 35 A 456 ASP VAL GLY ALA SER ALA GLY ILE GLU ILE PRO PHE SER SEQRES 36 A 456 LEU MODRES 2YNK MSE A 189 MET SELENOMETHIONINE MODRES 2YNK MSE A 192 MET SELENOMETHIONINE MODRES 2YNK MSE A 197 MET SELENOMETHIONINE MODRES 2YNK MSE A 225 MET SELENOMETHIONINE MODRES 2YNK MSE A 257 MET SELENOMETHIONINE MODRES 2YNK MSE A 314 MET SELENOMETHIONINE MODRES 2YNK MSE A 328 MET SELENOMETHIONINE MODRES 2YNK MSE A 357 MET SELENOMETHIONINE MODRES 2YNK MSE A 384 MET SELENOMETHIONINE HET MSE A 189 8 HET MSE A 192 8 HET MSE A 197 8 HET MSE A 225 8 HET MSE A 257 8 HET MSE A 314 8 HET MSE A 328 8 HET MSE A 357 8 HET MSE A 384 8 HET OCT A1001 8 HET D12 A1002 12 HET D12 A1003 12 HET D12 A1004 12 HET D12 A1005 12 HET D12 A1006 12 HET D12 A1007 12 HET D12 A1008 12 HET OCT A1009 8 HET OCT A1010 8 HET OCT A1011 8 HET OCT A1012 8 HET HEX A1013 6 HET OCT A1014 8 HET HEX A1015 6 HET HEX A1016 6 HET HEX A1017 6 HET HEX A1018 6 HETNAM HEX HEXANE HETNAM D12 DODECANE HETNAM OCT N-OCTANE HETNAM MSE SELENOMETHIONINE FORMUL 2 HEX 5(C6 H14) FORMUL 3 D12 7(C12 H26) FORMUL 4 OCT 6(C8 H18) FORMUL 5 MSE 9(C5 H11 N O2 SE) FORMUL 6 HOH *14(H2 O) HELIX 1 1 ASP A 30 ARG A 43 1 14 HELIX 2 2 GLN A 57 LYS A 66 1 10 HELIX 3 3 TYR A 71 LYS A 89 1 19 HELIX 4 4 THR A 207 GLY A 214 5 8 HELIX 5 5 LEU A 300 GLY A 305 1 6 SHEET 1 AA 2 LEU A 26 VAL A 27 0 SHEET 2 AA 2 LEU A 55 SER A 56 -1 O LEU A 55 N VAL A 27 SHEET 1 AB 2 THR A 52 TRP A 53 0 SHEET 2 AB 2 TRP A 174 TRP A 175 -1 O TRP A 174 N TRP A 53 SHEET 1 AC20 PHE A 92 SER A 99 0 SHEET 2 AC20 VAL A 465 PHE A 475 -1 O ALA A 469 N THR A 98 SHEET 3 AC20 VAL A 446 ASN A 456 -1 O ARG A 447 N GLU A 472 SHEET 4 AC20 ASP A 429 TYR A 443 -1 O LYS A 432 N ASN A 456 SHEET 5 AC20 ARG A 404 VAL A 414 -1 O ARG A 404 N SER A 439 SHEET 6 AC20 GLN A 389 ILE A 398 -1 O GLN A 389 N LYS A 413 SHEET 7 AC20 ALA A 343 ASP A 352 -1 O ALA A 343 N ILE A 398 SHEET 8 AC20 LEU A 323 GLY A 338 -1 O PHE A 329 N ASP A 352 SHEET 9 AC20 VAL A 308 SER A 320 -1 O SER A 309 N GLU A 334 SHEET 10 AC20 ASN A 289 LYS A 299 -1 O ALA A 292 N GLY A 316 SHEET 11 AC20 LEU A 249 TRP A 259 -1 O GLU A 250 N LYS A 297 SHEET 12 AC20 LYS A 235 ILE A 246 -1 O LYS A 235 N TRP A 259 SHEET 13 AC20 TRP A 216 GLN A 224 -1 O GLN A 217 N THR A 242 SHEET 14 AC20 THR A 193 ARG A 199 -1 O THR A 193 N GLN A 224 SHEET 15 AC20 GLN A 164 GLN A 170 -1 O TRP A 165 N GLN A 198 SHEET 16 AC20 TYR A 156 PHE A 161 -1 O GLY A 157 N PHE A 168 SHEET 17 AC20 TRP A 130 GLU A 142 1 O ASP A 131 N ALA A 158 SHEET 18 AC20 ALA A 115 GLY A 127 -1 N ASP A 116 O GLY A 141 SHEET 19 AC20 PHE A 92 SER A 99 0 SHEET 1 AD 2 TYR A 374 GLN A 375 0 SHEET 2 AD 2 TYR A 378 PRO A 379 -1 O TYR A 378 N GLN A 375 LINK N MSE A 189 C ALA A 188 1555 1555 1.33 LINK C MSE A 189 N ARG A 190 1555 1555 1.32 LINK N MSE A 192 C PRO A 191 1555 1555 1.33 LINK C MSE A 192 N THR A 193 1555 1555 1.33 LINK N MSE A 197 C LEU A 196 1555 1555 1.33 LINK C MSE A 197 N GLN A 198 1555 1555 1.34 LINK N MSE A 225 C GLN A 224 1555 1555 1.33 LINK C MSE A 225 N ASN A 226 1555 1555 1.33 LINK N MSE A 257 C ILE A 256 1555 1555 1.33 LINK C MSE A 257 N GLN A 258 1555 1555 1.33 LINK C MSE A 314 N ILE A 315 1555 1555 1.33 LINK N MSE A 314 C GLN A 313 1555 1555 1.33 LINK C MSE A 328 N PHE A 329 1555 1555 1.33 LINK N MSE A 328 C ASN A 327 1555 1555 1.33 LINK C MSE A 357 N SER A 358 1555 1555 1.33 LINK N MSE A 357 C ASN A 356 1555 1555 1.33 LINK C MSE A 384 N GLY A 385 1555 1555 1.33 LINK N MSE A 384 C ALA A 383 1555 1555 1.33 CISPEP 1 TRP A 53 PRO A 54 0 3.68 SITE 1 AC1 3 LEU A 134 GLN A 170 THR A 193 SITE 1 AC2 2 ASP A 441 VAL A 442 SITE 1 AC3 2 GLY A 157 VAL A 159 SITE 1 AC4 1 GLN A 403 SITE 1 AC5 4 TRP A 339 ASP A 342 LEU A 397 TRP A 405 SITE 1 AC6 4 THR A 100 TYR A 454 ASP A 464 VAL A 465 SITE 1 AC7 4 THR A 98 SER A 99 ALA A 467 SER A 468 SITE 1 AC8 1 SER A 118 SITE 1 AC9 4 PRO A 205 GLU A 206 THR A 207 LEU A 210 SITE 1 BC1 1 ASN A 459 SITE 1 BC2 1 ASN A 456 CRYST1 136.660 152.080 95.040 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007317 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010522 0.00000