HEADER OXIDOREDUCTASE 24-OCT-12 2YOI TITLE CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST EUKARYOTES TITLE 2 COMMON ANCESTOR (LECA) FROM THE PRECAMBRIAN PERIOD COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECA THIOREDOXIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30A PLUS; SOURCE 9 OTHER_DETAILS: ANCESTRAL, RECONSTRUCTED PHYLOGENETICALLY KEYWDS OXIDOREDUCTASE, ANCESTRAL RECONSTRUCTED EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,A.INGLES-PRIETO,B.IBARRA-MOLERO,J.M.SANCHEZ-RUIZ REVDAT 6 20-DEC-23 2YOI 1 REMARK LINK REVDAT 5 06-MAR-19 2YOI 1 REMARK REVDAT 4 30-JAN-19 2YOI 1 JRNL REMARK ATOM REVDAT 3 25-SEP-13 2YOI 1 JRNL REVDAT 2 28-AUG-13 2YOI 1 HETATM REVDAT 1 21-AUG-13 2YOI 0 JRNL AUTH A.INGLES-PRIETO,B.IBARRA-MOLERO,A.DELGADO-DELGADO, JRNL AUTH 2 R.PEREZ-JIMENEZ,J.M.FERNANDEZ,E.A.GAUCHER,J.M.SANCHEZ-RUIZ, JRNL AUTH 3 J.A.GAVIRA JRNL TITL CONSERVATION OF PROTEIN STRUCTURE OVER FOUR BILLION YEARS. JRNL REF STRUCTURE V. 21 1690 2013 JRNL REFN ISSN 1878-4186 JRNL PMID 23932589 JRNL DOI 10.1016/J.STR.2013.06.020 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.790 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 46540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.5882 - 3.3403 0.98 2816 142 0.1667 0.2057 REMARK 3 2 3.3403 - 2.6522 0.98 2717 166 0.1448 0.1737 REMARK 3 3 2.6522 - 2.3172 0.98 2712 163 0.1450 0.1666 REMARK 3 4 2.3172 - 2.1055 0.97 2673 169 0.1391 0.1564 REMARK 3 5 2.1055 - 1.9546 0.97 2693 142 0.1486 0.2004 REMARK 3 6 1.9546 - 1.8394 0.95 2642 124 0.1565 0.1643 REMARK 3 7 1.8394 - 1.7473 0.94 2612 127 0.1621 0.2035 REMARK 3 8 1.7473 - 1.6713 0.94 2564 159 0.1599 0.1837 REMARK 3 9 1.6713 - 1.6069 0.93 2604 132 0.1520 0.1993 REMARK 3 10 1.6069 - 1.5515 0.93 2545 128 0.1510 0.1772 REMARK 3 11 1.5515 - 1.5030 0.93 2536 139 0.1536 0.1631 REMARK 3 12 1.5030 - 1.4600 0.93 2560 128 0.1586 0.1943 REMARK 3 13 1.4600 - 1.4216 0.93 2571 136 0.1659 0.1818 REMARK 3 14 1.4216 - 1.3869 0.92 2510 145 0.1736 0.2116 REMARK 3 15 1.3869 - 1.3554 0.92 2532 133 0.1845 0.1993 REMARK 3 16 1.3554 - 1.3265 0.92 2565 120 0.1857 0.2198 REMARK 3 17 1.3265 - 1.3000 0.86 2327 108 0.1892 0.2272 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.47 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 66.51 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97870 REMARK 3 B22 (A**2) : -0.22280 REMARK 3 B33 (A**2) : -0.75580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36580 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2006 REMARK 3 ANGLE : 1.287 2750 REMARK 3 CHIRALITY : 0.079 305 REMARK 3 PLANARITY : 0.007 361 REMARK 3 DIHEDRAL : 14.262 825 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7293 -0.6602 33.5299 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.0360 REMARK 3 T33: 0.0396 T12: -0.0460 REMARK 3 T13: -0.0576 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.5941 L22: 4.0723 REMARK 3 L33: 4.9416 L12: 0.3226 REMARK 3 L13: -0.8322 L23: -3.0893 REMARK 3 S TENSOR REMARK 3 S11: 0.2581 S12: -0.1320 S13: -0.1508 REMARK 3 S21: 0.3528 S22: -0.1834 S23: -0.1289 REMARK 3 S31: 0.2625 S32: -0.0175 S33: 0.3113 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 8:17) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5245 -2.6204 37.4104 REMARK 3 T TENSOR REMARK 3 T11: 0.2832 T22: 0.2117 REMARK 3 T33: 0.0819 T12: -0.1473 REMARK 3 T13: 0.0425 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.9837 L22: 2.7085 REMARK 3 L33: 0.8483 L12: 0.5032 REMARK 3 L13: 0.4460 L23: -1.0298 REMARK 3 S TENSOR REMARK 3 S11: 0.1177 S12: -0.2190 S13: -0.0539 REMARK 3 S21: 0.4957 S22: -0.0879 S23: 0.2023 REMARK 3 S31: 0.2542 S32: -0.4085 S33: -0.1126 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 18:31) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5653 -0.6565 25.4927 REMARK 3 T TENSOR REMARK 3 T11: 0.0275 T22: 0.0602 REMARK 3 T33: 0.0300 T12: -0.0170 REMARK 3 T13: -0.0088 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.1500 L22: 6.2623 REMARK 3 L33: 3.8287 L12: -2.0971 REMARK 3 L13: -1.8787 L23: 2.9492 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.0419 S13: 0.0383 REMARK 3 S21: 0.0560 S22: -0.0377 S23: -0.0638 REMARK 3 S31: -0.0201 S32: -0.1701 S33: 0.0358 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 32:47) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6918 5.2312 21.2279 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.0750 REMARK 3 T33: 0.0688 T12: -0.0481 REMARK 3 T13: -0.0133 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.6958 L22: 6.1146 REMARK 3 L33: 3.7053 L12: -0.0898 REMARK 3 L13: -0.5795 L23: 3.2241 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.1214 S13: 0.0915 REMARK 3 S21: -0.0810 S22: 0.0864 S23: -0.3382 REMARK 3 S31: -0.3411 S32: 0.1825 S33: -0.0960 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 48:58) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8179 8.2815 29.8461 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.0571 REMARK 3 T33: 0.1050 T12: -0.0084 REMARK 3 T13: -0.0127 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 3.3765 L22: 1.8984 REMARK 3 L33: 2.3185 L12: 0.2242 REMARK 3 L13: -0.4421 L23: 1.0589 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: -0.0508 S13: 0.4911 REMARK 3 S21: 0.1814 S22: -0.0786 S23: -0.0560 REMARK 3 S31: -0.4060 S32: -0.0618 S33: 0.0045 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 59:75) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0706 -8.7394 25.5352 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1027 REMARK 3 T33: 0.0919 T12: -0.0638 REMARK 3 T13: 0.0261 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 2.9268 L22: 2.5384 REMARK 3 L33: 2.2661 L12: 1.3430 REMARK 3 L13: -0.1807 L23: -1.9449 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.0664 S13: 0.0466 REMARK 3 S21: 0.1281 S22: -0.0912 S23: 0.0847 REMARK 3 S31: 0.2577 S32: -0.2738 S33: 0.0191 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 76:93) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8859 4.5826 24.3171 REMARK 3 T TENSOR REMARK 3 T11: 0.0599 T22: 0.1748 REMARK 3 T33: 0.1215 T12: 0.0181 REMARK 3 T13: -0.0197 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 4.1457 L22: 2.9192 REMARK 3 L33: 3.0947 L12: -0.1145 REMARK 3 L13: -2.0800 L23: -0.0534 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.1967 S13: 0.0934 REMARK 3 S21: 0.0669 S22: -0.0290 S23: 0.3715 REMARK 3 S31: -0.2380 S32: -0.4845 S33: 0.0489 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 94:106) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3800 12.0887 19.1752 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.0562 REMARK 3 T33: 0.1015 T12: -0.0037 REMARK 3 T13: -0.0847 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 6.3015 L22: 4.0930 REMARK 3 L33: 4.4536 L12: -1.1060 REMARK 3 L13: -2.2407 L23: -1.0611 REMARK 3 S TENSOR REMARK 3 S11: -0.1134 S12: -0.0224 S13: 0.3531 REMARK 3 S21: 0.0843 S22: 0.0319 S23: -0.0250 REMARK 3 S31: -0.4981 S32: -0.0986 S33: 0.0158 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2065 -28.9134 14.7954 REMARK 3 T TENSOR REMARK 3 T11: 0.1617 T22: 0.0536 REMARK 3 T33: 0.1619 T12: -0.0114 REMARK 3 T13: -0.0522 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 6.2974 L22: 0.9838 REMARK 3 L33: 5.6693 L12: -1.8454 REMARK 3 L13: 3.1111 L23: 0.2297 REMARK 3 S TENSOR REMARK 3 S11: 0.3106 S12: -0.2298 S13: -0.5040 REMARK 3 S21: 0.4596 S22: -0.0863 S23: -0.1545 REMARK 3 S31: 0.4057 S32: -0.1514 S33: -0.1875 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 8:17) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6029 -27.5304 8.5641 REMARK 3 T TENSOR REMARK 3 T11: 0.1205 T22: 0.1978 REMARK 3 T33: 0.2733 T12: 0.0650 REMARK 3 T13: -0.0342 T23: -0.0730 REMARK 3 L TENSOR REMARK 3 L11: 0.0077 L22: 2.9568 REMARK 3 L33: 5.6398 L12: 0.1490 REMARK 3 L13: 0.0107 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: -0.0364 S13: -0.3837 REMARK 3 S21: 0.1122 S22: 0.1667 S23: -0.4468 REMARK 3 S31: 0.3875 S32: 0.7585 S33: -0.0951 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 18:31) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8860 -21.5367 11.4547 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0640 REMARK 3 T33: 0.0747 T12: -0.0381 REMARK 3 T13: 0.0064 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.9276 L22: 3.2779 REMARK 3 L33: 3.0051 L12: -0.2593 REMARK 3 L13: 0.0583 L23: 1.5595 REMARK 3 S TENSOR REMARK 3 S11: 0.0962 S12: -0.0669 S13: -0.0151 REMARK 3 S21: 0.3357 S22: -0.1741 S23: -0.0853 REMARK 3 S31: 0.2051 S32: -0.0694 S33: 0.0609 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 32:47) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7937 -23.3167 12.6611 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.0816 REMARK 3 T33: 0.0898 T12: -0.0518 REMARK 3 T13: 0.0411 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.5069 L22: 3.8916 REMARK 3 L33: 5.1399 L12: 0.1207 REMARK 3 L13: -0.6406 L23: 2.7794 REMARK 3 S TENSOR REMARK 3 S11: 0.1069 S12: 0.0484 S13: -0.1154 REMARK 3 S21: 0.0934 S22: -0.1231 S23: 0.1799 REMARK 3 S31: 0.0641 S32: -0.1761 S33: 0.0341 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 48:58) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9549 -27.7508 6.5863 REMARK 3 T TENSOR REMARK 3 T11: 0.0449 T22: 0.0505 REMARK 3 T33: 0.0659 T12: 0.0020 REMARK 3 T13: 0.0045 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 4.1323 L22: 5.4078 REMARK 3 L33: 7.4825 L12: 2.5704 REMARK 3 L13: 3.5133 L23: 4.3043 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: 0.0814 S13: -0.1744 REMARK 3 S21: 0.0290 S22: -0.0153 S23: -0.0234 REMARK 3 S31: 0.0637 S32: -0.1057 S33: -0.0565 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 59:68) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1996 -18.4654 17.9243 REMARK 3 T TENSOR REMARK 3 T11: 0.2102 T22: 0.0667 REMARK 3 T33: 0.1088 T12: 0.0190 REMARK 3 T13: -0.0699 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 2.5975 L22: 8.7957 REMARK 3 L33: 2.9245 L12: 0.5779 REMARK 3 L13: 1.7908 L23: -3.4282 REMARK 3 S TENSOR REMARK 3 S11: 0.2012 S12: -0.0721 S13: -0.1274 REMARK 3 S21: 0.6489 S22: 0.0375 S23: -0.2422 REMARK 3 S31: 0.3765 S32: 0.2328 S33: -0.0630 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 69:83) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8458 -16.8927 6.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.0202 T22: 0.0558 REMARK 3 T33: 0.0928 T12: 0.0010 REMARK 3 T13: 0.0126 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 2.5818 L22: 2.2440 REMARK 3 L33: 3.8100 L12: 0.8181 REMARK 3 L13: -0.1305 L23: 1.0581 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: 0.0832 S13: -0.0566 REMARK 3 S21: 0.0397 S22: -0.0309 S23: -0.1147 REMARK 3 S31: 0.1544 S32: 0.1032 S33: 0.0017 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 84:106) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3116 -17.5737 1.1791 REMARK 3 T TENSOR REMARK 3 T11: 0.0460 T22: 0.0939 REMARK 3 T33: 0.1062 T12: -0.0074 REMARK 3 T13: -0.0062 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 3.8775 L22: 3.1200 REMARK 3 L33: 3.9709 L12: -0.0233 REMARK 3 L13: -0.8081 L23: 0.7288 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.1546 S13: 0.0660 REMARK 3 S21: -0.1814 S22: 0.0080 S23: 0.2664 REMARK 3 S31: -0.0048 S32: -0.2593 S33: 0.0361 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YOI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46574 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 36.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2TRX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION, SITTING DROP; 1:1 REMARK 280 RATIO MAGNESIUM ACETATE TETRAHYDRATE, 20% PEG 3350 T 293 K, PH REMARK 280 5.5, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 29.18300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.88600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 29.18300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.88600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2075 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2114 LIES ON A SPECIAL POSITION. REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2001 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2045 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A2104 DISTANCE = 6.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1109 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 1 O REMARK 620 2 HOH A2124 O 94.0 REMARK 620 3 HOH A2221 O 132.3 103.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1110 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 29 OG1 REMARK 620 2 HOH A2137 O 106.3 REMARK 620 3 HOH A2143 O 112.8 116.2 REMARK 620 4 HOH A2222 O 98.5 108.8 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1108 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2051 O REMARK 620 2 HOH A2064 O 120.3 REMARK 620 3 HOH A2220 O 93.9 92.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1112 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2040 O REMARK 620 2 HOH A2058 O 94.1 REMARK 620 3 HOH A2060 O 89.1 90.8 REMARK 620 4 HOH A2116 O 87.2 177.9 90.9 REMARK 620 5 HOH A2224 O 179.4 86.0 90.3 92.7 REMARK 620 6 HOH A2225 O 89.9 85.5 176.1 92.8 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2189 O REMARK 620 2 HOH B2193 O 155.9 REMARK 620 3 HOH B2198 O 108.1 96.0 REMARK 620 4 HOH B2199 O 57.1 114.6 111.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1107 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YN1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST GAMMA- REMARK 900 PROTEOBACTERIA COMMON ANCESTOR (LGPCA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 2YNX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ARCHAEA REMARK 900 COMMON ANCESTOR (LACA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 4BA7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST REMARK 900 BACTERIA COMMON ANCESTOR (LBCA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 2YJ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A HYPERSTABLE PROTEIN FROM THE PRECAMBRIAN REMARK 900 PERIOD REMARK 900 RELATED ID: 2YPM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ANIMAL REMARK 900 AND FUNGI COMMON ANCESTOR (LAFCA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 3ZIV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ARCHAEA- REMARK 900 EUKARYOTES COMMON ANCESTOR (AECA) FROM THE PRECAMBRIAN PERIOD DBREF 2YOI A 1 106 PDB 2YOI 2YOI 1 106 DBREF 2YOI B 1 106 PDB 2YOI 2YOI 1 106 SEQRES 1 A 106 MET VAL ILE GLN VAL THR ASN LYS GLU GLU PHE GLU ALA SEQRES 2 A 106 ILE LEU SER GLU ALA ASP LYS LEU VAL VAL VAL ASP PHE SEQRES 3 A 106 PHE ALA THR TRP CYS GLY PRO CYS LYS MET ILE ALA PRO SEQRES 4 A 106 PHE PHE GLU GLU LEU SER GLU GLU TYR PRO ASP LYS VAL SEQRES 5 A 106 VAL PHE ILE LYS VAL ASP VAL ASP GLU VAL PRO ASP VAL SEQRES 6 A 106 ALA ALA LYS TYR GLY ILE THR SER MET PRO THR PHE LYS SEQRES 7 A 106 PHE PHE LYS ASN GLY LYS LYS VAL ASP GLU LEU VAL GLY SEQRES 8 A 106 ALA ASN GLN GLU LYS LEU LYS GLN MET ILE LEU LYS HIS SEQRES 9 A 106 ALA PRO SEQRES 1 B 106 MET VAL ILE GLN VAL THR ASN LYS GLU GLU PHE GLU ALA SEQRES 2 B 106 ILE LEU SER GLU ALA ASP LYS LEU VAL VAL VAL ASP PHE SEQRES 3 B 106 PHE ALA THR TRP CYS GLY PRO CYS LYS MET ILE ALA PRO SEQRES 4 B 106 PHE PHE GLU GLU LEU SER GLU GLU TYR PRO ASP LYS VAL SEQRES 5 B 106 VAL PHE ILE LYS VAL ASP VAL ASP GLU VAL PRO ASP VAL SEQRES 6 B 106 ALA ALA LYS TYR GLY ILE THR SER MET PRO THR PHE LYS SEQRES 7 B 106 PHE PHE LYS ASN GLY LYS LYS VAL ASP GLU LEU VAL GLY SEQRES 8 B 106 ALA ASN GLN GLU LYS LEU LYS GLN MET ILE LEU LYS HIS SEQRES 9 B 106 ALA PRO HET CL A1107 1 HET NA A1108 1 HET NA A1109 1 HET MG A1110 1 HET ACT A1111 7 HET MG A1112 1 HET NA B1107 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION FORMUL 3 CL CL 1- FORMUL 4 NA 3(NA 1+) FORMUL 6 MG 2(MG 2+) FORMUL 7 ACT C2 H3 O2 1- FORMUL 10 HOH *415(H2 O) HELIX 1 1 ASN A 7 ALA A 18 1 12 HELIX 2 2 CYS A 31 TYR A 48 1 18 HELIX 3 3 VAL A 62 TYR A 69 1 8 HELIX 4 4 ASN A 93 ALA A 105 1 13 HELIX 5 5 ASN B 7 ALA B 18 1 12 HELIX 6 6 CYS B 31 TYR B 48 1 18 HELIX 7 7 VAL B 62 TYR B 69 1 8 HELIX 8 8 ASN B 93 ALA B 105 1 13 SHEET 1 AA 5 ILE A 3 GLN A 4 0 SHEET 2 AA 5 VAL A 52 ASP A 58 1 O PHE A 54 N ILE A 3 SHEET 3 AA 5 LEU A 21 PHE A 27 1 O LEU A 21 N VAL A 53 SHEET 4 AA 5 THR A 76 LYS A 81 -1 O THR A 76 N PHE A 26 SHEET 5 AA 5 LYS A 84 VAL A 90 -1 O LYS A 84 N LYS A 81 SHEET 1 BA 5 VAL B 2 GLN B 4 0 SHEET 2 BA 5 VAL B 52 ASP B 58 1 O PHE B 54 N ILE B 3 SHEET 3 BA 5 LEU B 21 PHE B 27 1 O LEU B 21 N VAL B 53 SHEET 4 BA 5 THR B 76 LYS B 81 -1 O THR B 76 N PHE B 26 SHEET 5 BA 5 LYS B 84 VAL B 90 -1 O LYS B 84 N LYS B 81 SSBOND 1 CYS A 31 CYS A 34 1555 1555 1.98 SSBOND 2 CYS B 31 CYS B 34 1555 1555 2.00 LINK O MET A 1 NA NA A1109 1555 1555 2.70 LINK OG1 THR A 29 MG MG A1110 1555 1555 2.64 LINK NA NA A1108 O HOH A2051 1555 1555 2.93 LINK NA NA A1108 O HOH A2064 1555 1555 2.74 LINK NA NA A1108 O HOH A2220 1555 1555 2.98 LINK NA NA A1109 O HOH A2124 1555 1555 3.03 LINK NA NA A1109 O HOH A2221 1555 1555 3.03 LINK MG MG A1110 O HOH A2137 1555 1555 2.63 LINK MG MG A1110 O HOH A2143 1555 1555 2.56 LINK MG MG A1110 O HOH A2222 1555 1555 2.69 LINK MG MG A1112 O HOH A2040 1555 2556 2.20 LINK MG MG A1112 O HOH A2058 1555 2556 2.34 LINK MG MG A1112 O HOH A2060 1555 2556 2.13 LINK MG MG A1112 O HOH A2116 1555 1555 2.44 LINK MG MG A1112 O HOH A2224 1555 1555 2.23 LINK MG MG A1112 O HOH A2225 1555 1555 2.21 LINK O HOH A2189 NA NA B1107 4445 1555 3.15 LINK NA NA B1107 O HOH B2193 1555 1555 3.00 LINK NA NA B1107 O HOH B2198 1555 1555 2.88 LINK NA NA B1107 O HOH B2199 1555 1555 3.01 CISPEP 1 MET A 74 PRO A 75 0 -7.77 CISPEP 2 MET A 74 PRO A 75 0 -5.73 CISPEP 3 MET B 74 PRO B 75 0 -7.58 SITE 1 AC1 2 LYS A 81 HIS A 104 SITE 1 AC2 4 MET A 1 HOH A2051 HOH A2064 HOH A2220 SITE 1 AC3 4 MET A 1 PHE A 54 HOH A2124 HOH A2221 SITE 1 AC4 4 THR A 29 HOH A2137 HOH A2143 HOH A2222 SITE 1 AC5 11 THR A 6 ASN A 7 LYS A 8 GLU A 61 SITE 2 AC5 11 VAL A 62 ASP A 64 ASN A 82 HOH A2019 SITE 3 AC5 11 HOH A2028 HOH A2144 HOH A2223 SITE 1 AC6 6 HOH A2040 HOH A2058 HOH A2060 HOH A2116 SITE 2 AC6 6 HOH A2224 HOH A2225 SITE 1 AC7 4 PRO B 106 HOH B2193 HOH B2198 HOH B2199 CRYST1 58.366 47.772 73.836 90.00 98.49 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017133 0.000000 0.002558 0.00000 SCALE2 0.000000 0.020933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013694 0.00000