HEADER HYDROLASE 25-OCT-12 2YOL TITLE WEST NILE VIRUS NS2B-NS3 PROTEASE IN COMPLEX WITH 3,4- TITLE 2 DICHLOROPHENYLACETYL-LYS-LYS-GCMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NS2B, RESIDUES 1420-1466,AND NS3,1502-1671; COMPND 5 SYNONYM: FLAVIVIRIN PROTEASE NS2B REGULATORY SUBUNIT, NON-STRUCTURAL COMPND 6 PROTEIN 2B, FLAVIVIRIN PROTEASE NS3 CATALYTIC SUBUNIT, NON-STRUCTURAL COMPND 7 PROTEIN 3; COMPND 8 EC: 3.4.21.91, 3.6.1.15, 3.6.4.13; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: RESIDUES SER47 TO PRO91 BELONG TO NS2B, WHICH WE COMPND 11 DESIGNATED AS MOLECULE A IN THE ASSOCIATED PUBLICATION. RESIDUES COMPND 12 GLY1002 TO GLU1169 (RESIDUE NUMBERS WERE INCREMENTED BY 1000) BELONG COMPND 13 TO NS3, WHICH WE DESIGNATED AS MOLECULE B IN THE ASSOCIATED COMPND 14 PUBLICATION. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WEST NILE VIRUS; SOURCE 3 ORGANISM_TAXID: 11082; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-15B KEYWDS SERINE PROTEASE, HYDROLASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR M.Z.HAMMAMY,C.HAASE,M.HAMMAMI,R.HILGENFELD,T.STEINMETZER REVDAT 2 20-DEC-23 2YOL 1 REMARK LINK REVDAT 1 27-MAR-13 2YOL 0 JRNL AUTH M.Z.HAMMAMY,C.HAASE,M.HAMMAMI,R.HILGENFELD,T.STEINMETZER JRNL TITL DEVELOPMENT AND CHARACTERIZATION OF NEW PEPTIDOMIMETIC JRNL TITL 2 INHIBITORS OF THE WEST NILE VIRUS NS2B-NS3 PROTEASE. JRNL REF CHEMMEDCHEM V. 8 231 2013 JRNL REFN ISSN 1860-7179 JRNL PMID 23307694 JRNL DOI 10.1002/CMDC.201200497 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 102.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 8685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 437 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 629 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1629 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : -0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.572 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.297 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.209 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.294 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1721 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2333 ; 1.489 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 213 ; 6.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;37.233 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 278 ;19.881 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;12.161 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 248 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1309 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1050 ; 0.682 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1692 ; 1.275 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 671 ; 1.304 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 639 ; 2.342 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9157 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 51.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2FP7 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL REMARK 280 (PEG)3350, 0.1 M HEPES, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.20000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.10000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.10000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 46 REMARK 465 GLY A 92 REMARK 465 ALA A 93 REMARK 465 PRO A 94 REMARK 465 TRP A 95 REMARK 465 ALA A 96 REMARK 465 GLY A 97 REMARK 465 GLY A 98 REMARK 465 GLY A 99 REMARK 465 GLY A 100 REMARK 465 SER A 101 REMARK 465 GLY A 102 REMARK 465 GLY A 103 REMARK 465 GLY A 104 REMARK 465 GLY A 105 REMARK 465 GLY A 1001 REMARK 465 PRO A 1008 REMARK 465 ARG A 1170 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 78 CD NE CZ NH1 NH2 REMARK 480 LYS A 1011 CD CE NZ REMARK 480 GLU A 1012 CB CG CD OE1 OE2 REMARK 480 LYS A 1117 CG CD CE NZ REMARK 480 LYS A 1142 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 48 59.32 -146.74 REMARK 500 THR A 69 -176.37 -176.68 REMARK 500 ASN A 89 75.05 93.87 REMARK 500 PRO A1010 96.06 -57.36 REMARK 500 THR A1018 16.41 59.66 REMARK 500 HIS A1092 -24.34 -141.36 REMARK 500 VAL A1100 63.77 -102.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A2171 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1087 NE2 REMARK 620 2 HIS A1092 NE2 85.3 REMARK 620 N 1 REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: (S)-6-AMINO-N-((S)-6-AMINO-1-(((1R,4S)-4- REMARK 630 GUANIDINOCYCLOHEXYL)METHYLAMINO)-1-OXOHEXAN-2-YL)-2-(2-(3,4- REMARK 630 DICHLOROPHENYL)ACETAMIDO)HEXANAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 EBN A 2170 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: 05R LYS LYS 05T REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EBN A 2170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2069 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 2171 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 46-49 REMAINED FROM THE N-TERMINAL HIS TAG AFTER THROMBIN REMARK 999 CLEAVAGE. REMARK 999 RESIDUES 97-105 BELONG TO THE ARTIFICIAL LINKER BETWEEN NS2B AND NS3 DBREF 2YOL A 50 96 UNP P06935 POLG_WNV 1420 1466 DBREF 2YOL A 1001 1170 UNP P06935 POLG_WNV 1502 1671 SEQADV 2YOL GLY A 46 UNP P06935 EXPRESSION TAG SEQADV 2YOL SER A 47 UNP P06935 EXPRESSION TAG SEQADV 2YOL HIS A 48 UNP P06935 EXPRESSION TAG SEQADV 2YOL MET A 49 UNP P06935 EXPRESSION TAG SEQADV 2YOL GLY A 97 UNP P06935 LINKER SEQADV 2YOL GLY A 98 UNP P06935 LINKER SEQADV 2YOL GLY A 99 UNP P06935 LINKER SEQADV 2YOL GLY A 100 UNP P06935 LINKER SEQADV 2YOL SER A 101 UNP P06935 LINKER SEQADV 2YOL GLY A 102 UNP P06935 LINKER SEQADV 2YOL GLY A 103 UNP P06935 LINKER SEQADV 2YOL GLY A 104 UNP P06935 LINKER SEQADV 2YOL GLY A 105 UNP P06935 LINKER SEQRES 1 A 230 GLY SER HIS MET THR ASP MET TRP ILE GLU ARG THR ALA SEQRES 2 A 230 ASP ILE THR TRP GLU SER ASP ALA GLU ILE THR GLY SER SEQRES 3 A 230 SER GLU ARG VAL ASP VAL ARG LEU ASP ASP ASP GLY ASN SEQRES 4 A 230 PHE GLN LEU MET ASN ASP PRO GLY ALA PRO TRP ALA GLY SEQRES 5 A 230 GLY GLY GLY SER GLY GLY GLY GLY GLY GLY VAL LEU TRP SEQRES 6 A 230 ASP THR PRO SER PRO LYS GLU TYR LYS LYS GLY ASP THR SEQRES 7 A 230 THR THR GLY VAL TYR ARG ILE MET THR ARG GLY LEU LEU SEQRES 8 A 230 GLY SER TYR GLN ALA GLY ALA GLY VAL MET VAL GLU GLY SEQRES 9 A 230 VAL PHE HIS THR LEU TRP HIS THR THR LYS GLY ALA ALA SEQRES 10 A 230 LEU MET SER GLY GLU GLY ARG LEU ASP PRO TYR TRP GLY SEQRES 11 A 230 SER VAL LYS GLU ASP ARG LEU CYS TYR GLY GLY PRO TRP SEQRES 12 A 230 LYS LEU GLN HIS LYS TRP ASN GLY HIS ASP GLU VAL GLN SEQRES 13 A 230 MET ILE VAL VAL GLU PRO GLY LYS ASN VAL LYS ASN VAL SEQRES 14 A 230 GLN THR LYS PRO GLY VAL PHE LYS THR PRO GLU GLY GLU SEQRES 15 A 230 ILE GLY ALA VAL THR LEU ASP TYR PRO THR GLY THR SER SEQRES 16 A 230 GLY SER PRO ILE VAL ASP LYS ASN GLY ASP VAL ILE GLY SEQRES 17 A 230 LEU TYR GLY ASN GLY VAL ILE MET PRO ASN GLY SER TYR SEQRES 18 A 230 ILE SER ALA ILE VAL GLN GLY GLU ARG HET CL A2069 1 HET EBN A2170 41 HET NI A2171 1 HETNAM CL CHLORIDE ION HETNAM EBN (S)-6-AMINO-N-((S)-6-AMINO-1-(((1R,4S)-4- HETNAM 2 EBN GUANIDINOCYCLOHEXYL)METHYLAMINO)-1-OXOHEXAN-2-YL)-2- HETNAM 3 EBN (2-(3,4-DICHLOROPHENYL)ACETAMIDO)HEXANAMIDE HETNAM NI NICKEL (II) ION HETSYN EBN 3,4-DICHLOROPHENYLACETYL-LYS-LYS-GCMA FORMUL 2 CL CL 1- FORMUL 3 EBN C28 H46 CL2 N8 O3 FORMUL 4 NI NI 2+ FORMUL 5 HOH *7(H2 O) HELIX 1 1 LEU A 1049 LYS A 1054 1 6 HELIX 2 2 PRO A 1131 SER A 1135 5 5 SHEET 1 AA 6 MET A 52 ALA A 58 0 SHEET 2 AA 6 GLY A1021 GLY A1029 -1 O VAL A1022 N THR A 57 SHEET 3 AA 6 GLY A1032 VAL A1042 -1 O GLY A1032 N GLY A1029 SHEET 4 AA 6 VAL A1045 THR A1048 -1 O VAL A1045 N VAL A1042 SHEET 5 AA 6 ARG A1076 TYR A1079 -1 O LEU A1077 N THR A1048 SHEET 6 AA 6 PRO A1067 SER A1071 -1 N TYR A1068 O CYS A1078 SHEET 1 AB 5 GLU A 67 ILE A 68 0 SHEET 2 AB 5 LYS A1107 THR A1111 1 O ASN A1108 N GLU A 67 SHEET 3 AB 5 VAL A1095 VAL A1099 -1 O VAL A1095 N THR A1111 SHEET 4 AB 5 PRO A1138 VAL A1140 -1 O PRO A1138 N ILE A1098 SHEET 5 AB 5 VAL A1146 LEU A1149 -1 N ILE A1147 O ILE A1139 SHEET 1 AC 6 PHE A 85 LEU A 87 0 SHEET 2 AC 6 ARG A 74 LEU A 79 -1 O ARG A 78 N GLN A 86 SHEET 3 AC 6 GLY A1114 THR A1118 1 O VAL A1115 N VAL A 75 SHEET 4 AC 6 GLY A1121 VAL A1126 -1 O GLY A1121 N THR A1118 SHEET 5 AC 6 TYR A1161 ALA A1164 -1 O SER A1163 N VAL A1126 SHEET 6 AC 6 GLY A1153 ILE A1155 -1 O VAL A1154 N ILE A1162 SHEET 1 AD 2 LEU A1058 SER A1060 0 SHEET 2 AD 2 GLY A1063 LEU A1065 -1 O GLY A1063 N SER A1060 LINK NE2 HIS A1087 NI NI A2171 5554 1555 1.79 LINK NE2 HIS A1092 NI NI A2171 1555 1555 2.19 SITE 1 AC1 16 TRP A 53 GLU A 55 GLY A 83 PHE A 85 SITE 2 AC1 16 HIS A1051 ASP A1075 ASP A1129 TYR A1130 SITE 3 AC1 16 THR A1132 SER A1135 TYR A1150 GLY A1151 SITE 4 AC1 16 ASN A1152 GLY A1153 ILE A1155 TYR A1161 SITE 1 AC2 2 ILE A 60 THR A1020 SITE 1 AC3 2 HIS A1087 HIS A1092 CRYST1 118.700 118.700 66.300 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008425 0.004864 0.000000 0.00000 SCALE2 0.000000 0.009728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015083 0.00000