HEADER CALCIUM-BINDING PROTEIN 28-OCT-12 2YOV OBSLTE 18-FEB-15 2YOV 5AEQ TITLE NEURONAL CALCIUM SENSOR (NCS-1)FROM RATTUS NORVEGICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURONAL CALCIUM SENSOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NCS-1, FREQUENIN HOMOLOG, FREQUENIN-LIKE PROTEIN, COMPND 5 FREQUENIN-LIKE UBIQUITOUS PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 CELL: NEURON; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALCIUM-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SALEEM,V.KARUPPIAH,J.P.DERRICK,S.PANDALANENI,R.BURGOYNE,L.Y.LIAN REVDAT 2 18-FEB-15 2YOV 1 OBSLTE REVDAT 1 06-NOV-13 2YOV 0 JRNL AUTH M.SALEEM,V.KARUPPIAH,J.P.DERRICK,S.PANDALANENI,R.BURGOYNE, JRNL AUTH 2 L.Y.LIAN JRNL TITL NEURONAL CALCIUM SENSOR (NCS-1)FROM RATTUS NORVEGICUS JRNL TITL 2 COMPLEX WITH D2 DOPAMINE RECEPTOR FROM HOMO SAPIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 96.61 REMARK 3 NUMBER OF REFLECTIONS : 30711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.22908 REMARK 3 R VALUE (WORKING SET) : 0.22595 REMARK 3 FREE R VALUE : 0.28679 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1631 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.950 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.001 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2241 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.243 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.292 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.469 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28 REMARK 3 B22 (A**2) : -1.36 REMARK 3 B33 (A**2) : 0.97 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -0.69 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.409 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2884 ; 0.025 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3877 ; 2.376 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 6.723 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;35.988 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 526 ;19.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.440 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.171 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2191 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2YOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-12. REMARK 100 THE PDBE ID CODE IS EBI-54576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M-F) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32357 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.95 REMARK 200 RESOLUTION RANGE LOW (A) : 54.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 2.3 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.2 REMARK 200 R MERGE FOR SHELL (I) : 0.41 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2YOU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.7 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.74500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 54 REMARK 465 PHE A 55 REMARK 465 PHE A 56 REMARK 465 PRO A 57 REMARK 465 PHE A 58 REMARK 465 GLY A 59 REMARK 465 VAL A 132 REMARK 465 GLY A 133 REMARK 465 ASN A 134 REMARK 465 THR A 135 REMARK 465 VAL A 136 REMARK 465 GLU A 137 REMARK 465 LEU A 138 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 SER B 6 REMARK 465 LYS B 7 REMARK 465 LEU B 8 REMARK 465 LYS B 9 REMARK 465 ASN B 134 REMARK 465 THR B 135 REMARK 465 VAL B 136 REMARK 465 GLU B 137 REMARK 465 LEU B 138 REMARK 465 TYR B 186 REMARK 465 ASP B 187 REMARK 465 GLY B 188 REMARK 465 LEU B 189 REMARK 465 VAL B 190 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 20 NA NA A 203 2546 2.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 4 CB SER A 4 OG -0.099 REMARK 500 SER A 93 CB SER A 93 OG -0.088 REMARK 500 GLU B 81 CD GLU B 81 OE1 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 3 CD - CE - NZ ANGL. DEV. = -22.3 DEGREES REMARK 500 SER A 4 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 LEU A 43 CA - CB - CG ANGL. DEV. = 23.0 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 LEU A 89 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 LEU A 185 CB - CG - CD1 ANGL. DEV. = -10.7 DEGREES REMARK 500 ASP B 123 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 151 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 73 75.20 -68.70 REMARK 500 LEU A 189 -72.12 -131.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 189 VAL A 190 -32.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 60 24.5 L L OUTSIDE RANGE REMARK 500 MET B 155 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2073 O REMARK 620 2 ALA A 175 O 78.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 22 O REMARK 620 2 THR B 17 O 108.8 REMARK 620 3 THR B 20 O 117.6 85.4 REMARK 620 4 HOH B2005 O 117.9 86.0 123.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 79 O REMARK 620 2 GLU A 84 OE1 79.0 REMARK 620 3 GLU A 84 OE2 128.7 51.4 REMARK 620 4 HOH A2035 O 98.3 83.2 89.0 REMARK 620 5 ASN A 75 OD1 153.4 127.4 76.6 89.2 REMARK 620 6 ASP A 73 OD1 86.5 108.5 96.5 168.1 81.8 REMARK 620 7 ASP A 77 OD1 75.8 150.4 155.4 85.2 79.4 85.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 120 OE1 REMARK 620 2 GLU A 120 OE2 50.4 REMARK 620 3 ASP A 109 OD1 107.3 101.3 REMARK 620 4 ASP A 113 OD1 151.9 151.9 86.9 REMARK 620 5 TYR A 115 O 77.9 126.9 80.6 80.8 REMARK 620 6 HOH A2047 O 88.9 86.7 163.6 79.6 106.2 REMARK 620 7 ASP A 111 OD1 125.3 74.9 83.6 79.5 155.3 84.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 157 OD1 REMARK 620 2 GLU A 168 OE1 110.6 REMARK 620 3 ASN A 159 OD1 85.6 122.5 REMARK 620 4 GLU A 168 OE2 88.0 50.7 76.6 REMARK 620 5 LYS A 163 O 87.8 79.3 158.1 124.0 REMARK 620 6 ASP A 161 OD1 83.5 154.3 78.6 154.4 79.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 81 OE1 REMARK 620 2 GLU B 84 OE1 79.7 REMARK 620 3 ASP B 73 OD1 173.4 106.0 REMARK 620 4 ASP B 77 OD1 91.8 159.0 83.8 REMARK 620 5 ARG B 79 O 89.6 79.7 94.6 81.0 REMARK 620 6 ASN B 75 OD1 99.2 120.2 75.2 80.0 159.3 REMARK 620 7 GLU B 84 OE2 87.5 49.7 93.8 150.0 129.0 70.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 109 OD1 REMARK 620 2 ASP B 111 OD1 83.9 REMARK 620 3 GLU B 120 OE2 98.9 76.4 REMARK 620 4 TYR B 115 O 86.6 152.2 131.0 REMARK 620 5 GLU B 120 OE1 104.9 128.4 52.0 79.4 REMARK 620 6 HOH B2043 O 158.7 79.2 89.8 102.3 95.8 REMARK 620 7 ASP B 113 OD1 85.5 76.1 151.6 77.1 153.6 77.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 161 OD1 REMARK 620 2 ASP B 157 OD1 85.7 REMARK 620 3 LYS B 163 O 84.1 93.0 REMARK 620 4 GLU B 168 OE1 151.4 116.6 77.4 REMARK 620 5 GLU B 168 OE2 151.1 88.2 124.4 53.4 REMARK 620 6 HOH B2063 O 75.7 161.3 86.6 81.6 107.4 REMARK 620 7 ASN B 159 OD1 68.4 80.9 152.2 129.7 82.8 90.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YOU RELATED DB: PDB REMARK 900 NEURONAL CALCIUM SENSOR-1 (NCS-1)FROM RATTUS REMARK 900 NORVEGICUS COMPLEX WITH D2 DOPAMINE RECEPTOR PEPTIDE REMARK 900 FROM HOMO SAPIENS DBREF 2YOV A 1 190 UNP P62168 NCS1_RAT 1 190 DBREF 2YOV B 1 190 UNP P62168 NCS1_RAT 1 190 SEQRES 1 A 190 MET GLY LYS SER ASN SER LYS LEU LYS PRO GLU VAL VAL SEQRES 2 A 190 GLU GLU LEU THR ARG LYS THR TYR PHE THR GLU LYS GLU SEQRES 3 A 190 VAL GLN GLN TRP TYR LYS GLY PHE ILE LYS ASP CYS PRO SEQRES 4 A 190 SER GLY GLN LEU ASP ALA ALA GLY PHE GLN LYS ILE TYR SEQRES 5 A 190 LYS GLN PHE PHE PRO PHE GLY ASP PRO THR LYS PHE ALA SEQRES 6 A 190 THR PHE VAL PHE ASN VAL PHE ASP GLU ASN LYS ASP GLY SEQRES 7 A 190 ARG ILE GLU PHE SER GLU PHE ILE GLN ALA LEU SER VAL SEQRES 8 A 190 THR SER ARG GLY THR LEU ASP GLU LYS LEU ARG TRP ALA SEQRES 9 A 190 PHE LYS LEU TYR ASP LEU ASP ASN ASP GLY TYR ILE THR SEQRES 10 A 190 ARG ASN GLU MET LEU ASP ILE VAL ASP ALA ILE TYR GLN SEQRES 11 A 190 MET VAL GLY ASN THR VAL GLU LEU PRO GLU GLU GLU ASN SEQRES 12 A 190 THR PRO GLU LYS ARG VAL ASP ARG ILE PHE ALA MET MET SEQRES 13 A 190 ASP LYS ASN ALA ASP GLY LYS LEU THR LEU GLN GLU PHE SEQRES 14 A 190 GLN GLU GLY SER LYS ALA ASP PRO SER ILE VAL GLN ALA SEQRES 15 A 190 LEU SER LEU TYR ASP GLY LEU VAL SEQRES 1 B 190 MET GLY LYS SER ASN SER LYS LEU LYS PRO GLU VAL VAL SEQRES 2 B 190 GLU GLU LEU THR ARG LYS THR TYR PHE THR GLU LYS GLU SEQRES 3 B 190 VAL GLN GLN TRP TYR LYS GLY PHE ILE LYS ASP CYS PRO SEQRES 4 B 190 SER GLY GLN LEU ASP ALA ALA GLY PHE GLN LYS ILE TYR SEQRES 5 B 190 LYS GLN PHE PHE PRO PHE GLY ASP PRO THR LYS PHE ALA SEQRES 6 B 190 THR PHE VAL PHE ASN VAL PHE ASP GLU ASN LYS ASP GLY SEQRES 7 B 190 ARG ILE GLU PHE SER GLU PHE ILE GLN ALA LEU SER VAL SEQRES 8 B 190 THR SER ARG GLY THR LEU ASP GLU LYS LEU ARG TRP ALA SEQRES 9 B 190 PHE LYS LEU TYR ASP LEU ASP ASN ASP GLY TYR ILE THR SEQRES 10 B 190 ARG ASN GLU MET LEU ASP ILE VAL ASP ALA ILE TYR GLN SEQRES 11 B 190 MET VAL GLY ASN THR VAL GLU LEU PRO GLU GLU GLU ASN SEQRES 12 B 190 THR PRO GLU LYS ARG VAL ASP ARG ILE PHE ALA MET MET SEQRES 13 B 190 ASP LYS ASN ALA ASP GLY LYS LEU THR LEU GLN GLU PHE SEQRES 14 B 190 GLN GLU GLY SER LYS ALA ASP PRO SER ILE VAL GLN ALA SEQRES 15 B 190 LEU SER LEU TYR ASP GLY LEU VAL HET CA A 200 1 HET CA A 201 1 HET CA A 202 1 HET NA A 203 1 HET CA B 200 1 HET CA B 201 1 HET CA B 202 1 HET NA B 203 1 HETNAM NA SODIUM ION HETNAM CA CALCIUM ION FORMUL 2 NA 2(NA 1+) FORMUL 3 CA 6(CA 2+) FORMUL 4 HOH *149(H2 O) HELIX 1 1 LYS A 9 LYS A 19 1 11 HELIX 2 2 THR A 23 CYS A 38 1 16 HELIX 3 3 ASP A 44 LYS A 53 1 10 HELIX 4 4 PRO A 61 ASP A 73 1 13 HELIX 5 5 PHE A 82 GLY A 95 1 14 HELIX 6 6 THR A 96 ASP A 109 1 14 HELIX 7 7 ARG A 118 MET A 131 1 14 HELIX 8 8 PRO A 139 ASN A 143 5 5 HELIX 9 9 THR A 144 ASP A 157 1 14 HELIX 10 10 LEU A 166 ASP A 176 1 11 HELIX 11 11 ASP A 176 SER A 184 1 9 HELIX 12 12 PRO B 10 LYS B 19 1 10 HELIX 13 13 THR B 23 CYS B 38 1 16 HELIX 14 14 ASP B 44 PHE B 56 1 13 HELIX 15 15 PRO B 61 ASP B 73 1 13 HELIX 16 16 PHE B 82 GLY B 95 1 14 HELIX 17 17 THR B 96 ASP B 109 1 14 HELIX 18 18 ARG B 118 GLY B 133 1 16 HELIX 19 19 PRO B 139 ASN B 143 5 5 HELIX 20 20 THR B 144 ASP B 157 1 14 HELIX 21 21 THR B 165 ASP B 176 1 12 HELIX 22 22 ASP B 176 SER B 184 1 9 SHEET 1 AA 2 GLN A 42 LEU A 43 0 SHEET 2 AA 2 ILE A 80 GLU A 81 -1 O ILE A 80 N LEU A 43 SHEET 1 AB 2 TYR A 115 THR A 117 0 SHEET 2 AB 2 LYS A 163 THR A 165 -1 O LEU A 164 N ILE A 116 SHEET 1 BA 2 GLN B 42 LEU B 43 0 SHEET 2 BA 2 ILE B 80 GLU B 81 -1 O ILE B 80 N LEU B 43 SHEET 1 BB 2 ILE B 116 THR B 117 0 SHEET 2 BB 2 LYS B 163 LEU B 164 -1 O LEU B 164 N ILE B 116 LINK CA CA A 200 O ARG A 79 1555 1555 2.06 LINK CA CA A 200 OE1 GLU A 84 1555 1555 2.57 LINK CA CA A 200 OE2 GLU A 84 1555 1555 2.46 LINK CA CA A 200 O HOH A2035 1555 1555 2.43 LINK CA CA A 200 OD1 ASN A 75 1555 1555 2.41 LINK CA CA A 200 OD1 ASP A 73 1555 1555 2.38 LINK CA CA A 200 OD1 ASP A 77 1555 1555 2.41 LINK CA CA A 201 OE1 GLU A 120 1555 1555 2.52 LINK CA CA A 201 OE2 GLU A 120 1555 1555 2.47 LINK CA CA A 201 OD1 ASP A 109 1555 1555 2.29 LINK CA CA A 201 OD1 ASP A 113 1555 1555 2.28 LINK CA CA A 201 O TYR A 115 1555 1555 2.26 LINK CA CA A 201 O HOH A2047 1555 1555 2.41 LINK CA CA A 201 OD1 ASP A 111 1555 1555 2.34 LINK CA CA A 202 OD1 ASP A 157 1555 1555 2.34 LINK CA CA A 202 OE1 GLU A 168 1555 1555 2.37 LINK CA CA A 202 OD1 ASN A 159 1555 1555 2.51 LINK CA CA A 202 OE2 GLU A 168 1555 1555 2.68 LINK CA CA A 202 O LYS A 163 1555 1555 2.33 LINK CA CA A 202 OD1 ASP A 161 1555 1555 2.29 LINK NA NA A 203 O HOH A2073 1555 1555 2.45 LINK NA NA A 203 O ALA A 175 1555 1555 2.55 LINK CA CA B 200 O ARG B 79 1555 1555 2.24 LINK CA CA B 200 OD1 ASP B 77 1555 1555 2.38 LINK CA CA B 200 OE1 GLU B 81 1555 1555 2.76 LINK CA CA B 200 OD1 ASN B 75 1555 1555 2.01 LINK CA CA B 200 OE1 GLU B 84 1555 1555 2.44 LINK CA CA B 200 OD1 ASP B 73 1555 1555 2.43 LINK CA CA B 200 OE2 GLU B 84 1555 1555 2.63 LINK CA CA B 201 OE2 GLU B 120 1555 1555 2.60 LINK CA CA B 201 OE1 GLU B 120 1555 1555 2.38 LINK CA CA B 201 O HOH B2043 1555 1555 2.48 LINK CA CA B 201 OD1 ASP B 109 1555 1555 2.27 LINK CA CA B 201 OD1 ASP B 111 1555 1555 2.36 LINK CA CA B 201 OD1 ASP B 113 1555 1555 2.39 LINK CA CA B 201 O TYR B 115 1555 1555 2.34 LINK CA CA B 202 OD1 ASP B 157 1555 1555 2.26 LINK CA CA B 202 O LYS B 163 1555 1555 2.38 LINK CA CA B 202 O HOH B2063 1555 1555 2.34 LINK CA CA B 202 OD1 ASP B 161 1555 1555 2.46 LINK CA CA B 202 OD1 ASN B 159 1555 1555 2.46 LINK CA CA B 202 OE1 GLU B 168 1555 1555 2.42 LINK CA CA B 202 OE2 GLU B 168 1555 1555 2.42 LINK NA NA B 203 O HOH B2005 1555 1555 2.31 LINK NA NA B 203 O THR B 20 1555 1555 2.41 LINK NA NA B 203 O THR B 17 1555 1555 2.45 LINK NA NA B 203 O PHE B 22 1555 1555 2.26 SITE 1 AC1 6 ASP A 73 ASN A 75 ASP A 77 ARG A 79 SITE 2 AC1 6 GLU A 84 HOH A2035 SITE 1 AC2 6 ASP A 109 ASP A 111 ASP A 113 TYR A 115 SITE 2 AC2 6 GLU A 120 HOH A2047 SITE 1 AC3 5 ASP A 157 ASN A 159 ASP A 161 LYS A 163 SITE 2 AC3 5 GLU A 168 SITE 1 AC4 3 ALA A 175 PRO A 177 HOH A2073 SITE 1 AC5 6 ASP B 73 ASN B 75 ASP B 77 ARG B 79 SITE 2 AC5 6 GLU B 81 GLU B 84 SITE 1 AC6 6 ASP B 109 ASP B 111 ASP B 113 TYR B 115 SITE 2 AC6 6 GLU B 120 HOH B2043 SITE 1 AC7 6 ASP B 157 ASN B 159 ASP B 161 LYS B 163 SITE 2 AC7 6 GLU B 168 HOH B2063 SITE 1 AC8 4 THR B 17 THR B 20 PHE B 22 HOH B2005 CRYST1 53.910 55.490 77.360 90.00 94.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018549 0.000000 0.001434 0.00000 SCALE2 0.000000 0.018021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012965 0.00000 MTRIX1 1 -0.163000 -0.001000 -0.986000 76.50000 1 MTRIX2 1 0.013000 0.999000 -0.003000 10.10000 1 MTRIX3 1 0.987000 -0.014000 -0.163000 30.20000 1