HEADER HYDROLASE 29-OCT-12 2YP0 TITLE CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- TITLE 2 PHOSPHODIESTERASE, CRYSTALLIZED WITH 2'-AMPS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL CATALYTIC DOMAIN, RESIDUES 159-378; COMPND 5 SYNONYM: CNP, CNPASE; COMPND 6 EC: 3.1.4.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PTH 27 KEYWDS HYDROLASE, MYELIN, NERVOUS SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.MYLLYKOSKI,A.RAASAKKA,M.LEHTIMAKI,H.HAN,P.KURSULA REVDAT 6 20-DEC-23 2YP0 1 REMARK REVDAT 5 17-JUL-19 2YP0 1 REMARK REVDAT 4 14-JUN-17 2YP0 1 ATOM REVDAT 3 13-NOV-13 2YP0 1 JRNL REVDAT 2 17-JUL-13 2YP0 1 JRNL REVDAT 1 10-JUL-13 2YP0 0 JRNL AUTH M.MYLLYKOSKI,A.RAASAKKA,M.LEHTIMAKI,H.HAN,I.KURSULA, JRNL AUTH 2 P.KURSULA JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF THE REACTION CYCLE OF JRNL TITL 2 2',3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE, A UNIQUE JRNL TITL 3 MEMBER OF THE 2H PHOSPHOESTERASE FAMILY JRNL REF J.MOL.BIOL. V. 425 4307 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23831225 JRNL DOI 10.1016/J.JMB.2013.06.012 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 8367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.2908 - 3.3140 0.95 2598 137 0.1910 0.2403 REMARK 3 2 3.3140 - 2.6325 1.00 2688 141 0.2317 0.2905 REMARK 3 3 2.6325 - 2.3004 1.00 2663 140 0.2376 0.3267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1743 REMARK 3 ANGLE : 0.657 2348 REMARK 3 CHIRALITY : 0.038 254 REMARK 3 PLANARITY : 0.003 288 REMARK 3 DIHEDRAL : 15.444 635 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 163 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3685 14.5468 77.2620 REMARK 3 T TENSOR REMARK 3 T11: 0.1282 T22: 0.2421 REMARK 3 T33: 0.3405 T12: 0.0290 REMARK 3 T13: -0.0849 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 1.7315 L22: 1.4533 REMARK 3 L33: 0.6322 L12: -1.1154 REMARK 3 L13: -0.7038 L23: 0.1086 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -0.2775 S13: -0.4096 REMARK 3 S21: 0.2630 S22: 0.0911 S23: -0.2125 REMARK 3 S31: 0.1192 S32: 0.1700 S33: -0.1344 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 175 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2989 10.2708 63.3263 REMARK 3 T TENSOR REMARK 3 T11: 0.2143 T22: 0.2817 REMARK 3 T33: 0.2919 T12: 0.0755 REMARK 3 T13: -0.0423 T23: 0.0619 REMARK 3 L TENSOR REMARK 3 L11: 2.8620 L22: 8.1339 REMARK 3 L33: 6.5619 L12: 4.5674 REMARK 3 L13: 3.4598 L23: 6.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.3255 S12: -0.1074 S13: 0.4805 REMARK 3 S21: 0.3556 S22: 0.1413 S23: 0.9461 REMARK 3 S31: -0.0933 S32: -0.0788 S33: 0.2520 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 194 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8550 -8.5779 55.6467 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.2122 REMARK 3 T33: 0.4018 T12: -0.1357 REMARK 3 T13: -0.0458 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 7.8690 L22: 5.1402 REMARK 3 L33: 3.7789 L12: -2.7004 REMARK 3 L13: -3.5826 L23: -0.5930 REMARK 3 S TENSOR REMARK 3 S11: 0.1559 S12: 0.4103 S13: -0.5655 REMARK 3 S21: 0.3230 S22: -0.2430 S23: -0.1825 REMARK 3 S31: 0.5340 S32: -0.3173 S33: -0.0914 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 217 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9433 5.7204 73.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1844 REMARK 3 T33: 0.1716 T12: 0.0147 REMARK 3 T13: -0.0513 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.1273 L22: 1.2959 REMARK 3 L33: 2.2731 L12: 1.5827 REMARK 3 L13: 1.7085 L23: 0.9389 REMARK 3 S TENSOR REMARK 3 S11: 0.1112 S12: -0.1523 S13: 0.0215 REMARK 3 S21: -0.0919 S22: -0.1061 S23: 0.0032 REMARK 3 S31: 0.1812 S32: -0.1971 S33: -0.0113 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 244 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8134 18.1946 69.4652 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.3214 REMARK 3 T33: 0.2970 T12: -0.0662 REMARK 3 T13: 0.0338 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 1.0089 L22: 4.0444 REMARK 3 L33: 4.0210 L12: -0.2910 REMARK 3 L13: 1.6323 L23: 1.5358 REMARK 3 S TENSOR REMARK 3 S11: -0.2832 S12: 0.2164 S13: 0.1542 REMARK 3 S21: -0.1323 S22: 0.2139 S23: -0.5414 REMARK 3 S31: -0.6106 S32: 0.4965 S33: 0.0959 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 271 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.6304 9.3353 63.5534 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.2659 REMARK 3 T33: 0.2158 T12: -0.0051 REMARK 3 T13: 0.0004 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 4.7867 L22: 5.0888 REMARK 3 L33: 0.7876 L12: 3.4860 REMARK 3 L13: 1.0943 L23: 0.2445 REMARK 3 S TENSOR REMARK 3 S11: -0.1230 S12: 0.3504 S13: -0.5773 REMARK 3 S21: 0.0779 S22: 0.2126 S23: -0.5526 REMARK 3 S31: 0.0560 S32: 0.3122 S33: -0.0620 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 300 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8551 2.2341 63.4688 REMARK 3 T TENSOR REMARK 3 T11: 0.1990 T22: 0.1859 REMARK 3 T33: 0.3038 T12: 0.0227 REMARK 3 T13: -0.0500 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 4.6855 L22: 3.8030 REMARK 3 L33: 3.9941 L12: 1.2309 REMARK 3 L13: -2.5331 L23: -1.7800 REMARK 3 S TENSOR REMARK 3 S11: -0.2428 S12: -0.1176 S13: -0.5362 REMARK 3 S21: -0.0384 S22: -0.2014 S23: -0.6223 REMARK 3 S31: 0.3531 S32: 0.3584 S33: 0.4185 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 334 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1308 2.3855 48.2762 REMARK 3 T TENSOR REMARK 3 T11: 0.4619 T22: 0.1801 REMARK 3 T33: 0.2484 T12: 0.0033 REMARK 3 T13: -0.0537 T23: -0.0782 REMARK 3 L TENSOR REMARK 3 L11: 2.7405 L22: 4.7116 REMARK 3 L33: 1.4258 L12: -1.7476 REMARK 3 L13: 0.5281 L23: 0.4776 REMARK 3 S TENSOR REMARK 3 S11: 0.5564 S12: 0.2370 S13: -0.1756 REMARK 3 S21: -0.8161 S22: -0.1325 S23: -0.1207 REMARK 3 S31: 0.3892 S32: 0.2645 S33: -0.3233 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESID 359 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9967 14.1260 63.3814 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.1567 REMARK 3 T33: 0.2759 T12: -0.0454 REMARK 3 T13: 0.0368 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.9144 L22: 2.2541 REMARK 3 L33: 2.1805 L12: 0.0590 REMARK 3 L13: 1.2162 L23: 1.0855 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.0707 S13: 0.2360 REMARK 3 S21: -0.2643 S22: -0.1616 S23: 0.1517 REMARK 3 S31: -0.3257 S32: -0.0120 S33: 0.2372 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE INCLUDED IN RIDING REMARK 3 POSITIONS. RESIDUES 158-162 AND 208-213 WERE EXCLUDED DUE TO REMARK 3 INSUFFICIENT ELECTRON DENSITY. REMARK 4 REMARK 4 2YP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.815 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8391 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XMI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250 UM PROTEIN AND 10 MM 2, 3(RP) REMARK 280 -CYCLIC-AMPS MIXED WITH 0.5 PLUS 0.5 DROPS WITH 30% PEG4000 AND REMARK 280 50 MM ACETATE (MIX OF PH 3 AND PH 5 IN 2:1 RATIO) AT RT, PH 4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.87000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 158 REMARK 465 GLY A 159 REMARK 465 LEU A 160 REMARK 465 GLU A 161 REMARK 465 LYS A 162 REMARK 465 GLY A 208 REMARK 465 ASP A 209 REMARK 465 GLU A 210 REMARK 465 PRO A 211 REMARK 465 LYS A 212 REMARK 465 GLU A 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 228 O HOH A 501 2.17 REMARK 500 O HOH A 571 O HOH A 576 2.17 REMARK 500 OE2 GLU A 368 O HOH A 502 2.18 REMARK 500 OE2 GLU A 345 NZ LYS A 350 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 517 O HOH A 534 2757 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 221 55.49 -97.69 REMARK 500 LYS A 335 107.39 -57.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OVE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OVE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XMI RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH CITRATE REMARK 900 RELATED ID: 2Y1P RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH CITRATE REMARK 900 RELATED ID: 2Y3X RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH SULFATE REMARK 900 RELATED ID: 2YDB RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC NADP REMARK 900 RELATED ID: 2YDC RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH GTP REMARK 900 RELATED ID: 2YDD RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC AMP REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL GLYCINE REMAINS FROM TEV-CLEAVAGE OF EXPRESSION REMARK 999 TAG. RESIDUE NUMBERING IS ACCORDING TO MOUSE CNPASE REMARK 999 ISOFORM 1 (P16330-2). DBREF 2YP0 A 159 378 UNP P16330 CN37_MOUSE 159 378 SEQADV 2YP0 GLY A 158 UNP P16330 EXPRESSION TAG SEQRES 1 A 221 GLY GLY LEU GLU LYS ASP PHE LEU PRO LEU TYR PHE GLY SEQRES 2 A 221 TRP PHE LEU THR LYS LYS SER SER GLU THR LEU ARG LYS SEQRES 3 A 221 ALA GLY GLN VAL PHE LEU GLU GLU LEU GLY ASN HIS LYS SEQRES 4 A 221 ALA PHE LYS LYS GLU LEU ARG HIS PHE ILE SER GLY ASP SEQRES 5 A 221 GLU PRO LYS GLU LYS LEU GLU LEU VAL SER TYR PHE GLY SEQRES 6 A 221 LYS ARG PRO PRO GLY VAL LEU HIS CYS THR THR LYS PHE SEQRES 7 A 221 CYS ASP TYR GLY LYS ALA ALA GLY ALA GLU GLU TYR ALA SEQRES 8 A 221 GLN GLN GLU VAL VAL LYS ARG SER TYR GLY LYS ALA PHE SEQRES 9 A 221 LYS LEU SER ILE SER ALA LEU PHE VAL THR PRO LYS THR SEQRES 10 A 221 ALA GLY ALA GLN VAL VAL LEU THR ASP GLN GLU LEU GLN SEQRES 11 A 221 LEU TRP PRO SER ASP LEU ASP LYS PRO SER ALA SER GLU SEQRES 12 A 221 GLY LEU PRO PRO GLY SER ARG ALA HIS VAL THR LEU GLY SEQRES 13 A 221 CYS ALA ALA ASP VAL GLN PRO VAL GLN THR GLY LEU ASP SEQRES 14 A 221 LEU LEU ASP ILE LEU GLN GLN VAL LYS GLY GLY SER GLN SEQRES 15 A 221 GLY GLU ALA VAL GLY GLU LEU PRO ARG GLY LYS LEU TYR SEQRES 16 A 221 SER LEU GLY LYS GLY ARG TRP MET LEU SER LEU THR LYS SEQRES 17 A 221 LYS MET GLU VAL LYS ALA ILE PHE THR GLY TYR TYR GLY HET OVE A 401 23 HET GOL A 402 14 HET OVE A 403 23 HET 1PE A 404 38 HET ACY A 405 7 HETNAM OVE 2'-O-(SULFIDOPHOSPHINATO)ADENOSINE HETNAM GOL GLYCEROL HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM ACY ACETIC ACID HETSYN OVE ADENOSINE-2'-MONOPHOSPHOROTHIOATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 1PE PEG400 FORMUL 2 OVE 2(C10 H14 N5 O6 P S) FORMUL 3 GOL C3 H8 O3 FORMUL 5 1PE C10 H22 O6 FORMUL 6 ACY C2 H4 O2 FORMUL 7 HOH *76(H2 O) HELIX 1 AA1 THR A 174 ASN A 194 1 21 HELIX 2 AA2 HIS A 195 GLU A 201 1 7 HELIX 3 AA3 LEU A 202 PHE A 205 5 4 HELIX 4 AA4 GLU A 216 PHE A 221 1 6 HELIX 5 AA5 ASP A 237 LYS A 240 5 4 HELIX 6 AA6 GLY A 243 GLN A 249 1 7 HELIX 7 AA7 GLN A 250 TYR A 257 1 8 HELIX 8 AA8 THR A 282 GLN A 287 1 6 HELIX 9 AA9 PRO A 296 GLU A 300 5 5 HELIX 10 AB1 VAL A 321 LYS A 335 1 15 HELIX 11 AB2 SER A 338 ALA A 342 5 5 SHEET 1 AA1 9 GLY A 344 LEU A 346 0 SHEET 2 AA1 9 GLY A 349 SER A 353 -1 O GLY A 349 N LEU A 346 SHEET 3 AA1 9 TRP A 359 TYR A 376 -1 O MET A 360 N TYR A 352 SHEET 4 AA1 9 ALA A 260 VAL A 270 -1 N LEU A 268 O LEU A 361 SHEET 5 AA1 9 THR A 274 VAL A 280 -1 O VAL A 280 N SER A 264 SHEET 6 AA1 9 HIS A 309 CYS A 314 -1 O GLY A 313 N ALA A 275 SHEET 7 AA1 9 HIS A 230 PHE A 235 -1 O HIS A 230 N THR A 311 SHEET 8 AA1 9 TYR A 168 LEU A 173 -1 N TRP A 171 O CYS A 231 SHEET 9 AA1 9 TRP A 359 TYR A 376 -1 O ILE A 372 N PHE A 172 SITE 1 AC1 10 TYR A 168 HIS A 230 THR A 232 PHE A 235 SITE 2 AC1 10 HIS A 309 THR A 311 PRO A 320 VAL A 321 SITE 3 AC1 10 HOH A 526 HOH A 560 SITE 1 AC2 3 PHE A 169 ALA A 248 TYR A 257 SITE 1 AC3 4 ARG A 203 HIS A 204 LYS A 356 HOH A 552 SITE 1 AC4 6 GLY A 258 LYS A 259 ALA A 260 PHE A 261 SITE 2 AC4 6 GLN A 284 ILE A 372 SITE 1 AC5 7 TRP A 289 PRO A 303 PRO A 304 GLY A 305 SITE 2 AC5 7 SER A 306 ARG A 307 HOH A 559 CRYST1 39.830 47.740 50.930 90.00 97.87 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025107 0.000000 0.003470 0.00000 SCALE2 0.000000 0.020947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019821 0.00000