HEADER VIRAL PROTEIN 29-OCT-12 2YP4 TITLE HAEMAGGLUTININ OF 2004 HUMAN H3N2 VIRUS IN COMPLEX WITH HUMAN RECEPTOR TITLE 2 ANALOGUE LSTC CAVEAT 2YP4 NAG B 2 HAS WRONG CHIRALITY AT ATOM C1 NAG A 1506 HAS WRONG CAVEAT 2 2YP4 CHIRALITY AT ATOM C1 NAG A 1506 WRONG CHIRALITY AT C1 NAG A CAVEAT 3 2YP4 1510 C1 PLANAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRYPSIN RELEASED ECTODOMAIN, RESIDUES 17-519; COMPND 5 SYNONYM: HAEMAGGLUTININ; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: H3N2; SOURCE 5 VARIANT: A/FINLAND/486/2004; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PACGP67A KEYWDS VIRAL PROTEIN, RECEPTOR BINDING, MEMBRANE FUSION, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.XIONG,Y.P.LIN,S.A.WHARTON,S.R.MARTIN,P.J.COOMBS,S.G.VACHIERI, AUTHOR 2 E.CHRISTODOULOU,P.A.WALKER,J.LIU,J.J.SKEHEL,S.J.GAMBLIN,A.J.HAY, AUTHOR 3 R.S.DANIELS,J.W.MCCAULEY REVDAT 6 29-JUL-20 2YP4 1 CAVEAT COMPND REMARK HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 08-MAY-19 2YP4 1 REMARK LINK REVDAT 4 16-JAN-13 2YP4 1 JRNL REVDAT 3 26-DEC-12 2YP4 1 AUTHOR JRNL REVDAT 2 21-NOV-12 2YP4 1 REMARK REVDAT 1 07-NOV-12 2YP4 0 JRNL AUTH Y.P.LIN,X.XIONG,S.A.WHARTON,S.R.MARTIN,P.J.COOMBS, JRNL AUTH 2 S.G.VACHIERI,E.CHRISTODOULOU,P.A.WALKER,J.LIU,J.J.SKEHEL, JRNL AUTH 3 S.J.GAMBLIN,A.J.HAY,R.S.DANIELS,J.W.MCCAULEY JRNL TITL EVOLUTION OF THE RECEPTOR BINDING PROPERTIES OF THE JRNL TITL 2 INFLUENZA A(H3N2) HEMAGGLUTININ. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 21474 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23236176 JRNL DOI 10.1073/PNAS.1218841110 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 129.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 62701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3349 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4304 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3877 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 218 REMARK 3 SOLVENT ATOMS : 457 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -1.47000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.483 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4221 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2866 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5741 ; 1.363 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6970 ; 0.958 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 499 ; 5.731 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;35.646 ;24.901 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 691 ;11.791 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;13.367 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 654 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4578 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 806 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): -32.4013 24.2136 38.8199 REMARK 3 T TENSOR REMARK 3 T11: 0.0497 T22: 0.1673 REMARK 3 T33: 0.1035 T12: 0.0250 REMARK 3 T13: -0.0493 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 0.1603 L22: 0.1537 REMARK 3 L33: 2.7738 L12: -0.0957 REMARK 3 L13: -0.5920 L23: 0.5371 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: -0.0849 S13: -0.0290 REMARK 3 S21: -0.0091 S22: 0.0973 S23: -0.0642 REMARK 3 S31: 0.0021 S32: 0.4812 S33: -0.1303 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): -39.3941 12.9485 -13.3881 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: 0.0767 REMARK 3 T33: 0.0855 T12: -0.0214 REMARK 3 T13: 0.0340 T23: -0.0759 REMARK 3 L TENSOR REMARK 3 L11: 0.1132 L22: 0.1728 REMARK 3 L33: 0.7562 L12: 0.0636 REMARK 3 L13: 0.0483 L23: 0.1076 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.0165 S13: -0.0387 REMARK 3 S21: -0.0920 S22: 0.0931 S23: -0.1141 REMARK 3 S31: 0.0362 S32: 0.0149 S33: -0.0795 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 334 A 366 REMARK 3 ORIGIN FOR THE GROUP (A): -31.5879 19.4161 56.7223 REMARK 3 T TENSOR REMARK 3 T11: 0.1421 T22: 0.2420 REMARK 3 T33: 0.0937 T12: 0.0883 REMARK 3 T13: -0.0862 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.1102 L22: 0.4850 REMARK 3 L33: 6.3795 L12: 0.0840 REMARK 3 L13: -1.4430 L23: -1.5677 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: -0.1466 S13: 0.0596 REMARK 3 S21: -0.0930 S22: -0.0688 S23: -0.0167 REMARK 3 S31: 0.2630 S32: 0.5231 S33: -0.0035 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 367 A 457 REMARK 3 ORIGIN FOR THE GROUP (A): -43.5502 22.6814 26.6402 REMARK 3 T TENSOR REMARK 3 T11: 0.1002 T22: 0.1298 REMARK 3 T33: 0.1031 T12: -0.0184 REMARK 3 T13: -0.0353 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.1516 L22: 0.0356 REMARK 3 L33: 1.4945 L12: -0.0384 REMARK 3 L13: 0.2861 L23: -0.0350 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: -0.0467 S13: -0.0473 REMARK 3 S21: -0.0239 S22: 0.0616 S23: -0.0254 REMARK 3 S31: 0.0589 S32: -0.0888 S33: -0.1720 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 458 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): -41.7173 19.9104 71.0921 REMARK 3 T TENSOR REMARK 3 T11: 0.1109 T22: 0.1137 REMARK 3 T33: 0.0590 T12: 0.0308 REMARK 3 T13: -0.0476 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 2.1678 L22: 1.5501 REMARK 3 L33: 3.4122 L12: -1.1182 REMARK 3 L13: -1.7277 L23: -0.4933 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: -0.2255 S13: 0.0386 REMARK 3 S21: 0.1404 S22: 0.1301 S23: 0.0031 REMARK 3 S31: -0.0936 S32: 0.1696 S33: -0.1123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2YP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85771 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 65.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP, DEGLYCOSYLATED PROTEIN, REMARK 280 0.1 M HEPES PH 7.5, 0.2 M KCL, 30% PENTAERYTHRITOL PROPOXYLATE REMARK 280 (5/4 PO/OH), VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.60500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.21681 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 129.31333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.60500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.21681 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 129.31333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.60500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.21681 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 129.31333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.60500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.21681 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 129.31333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.60500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.21681 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 129.31333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.60500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.21681 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 129.31333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.43362 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 258.62667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.43362 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 258.62667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.43362 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 258.62667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.43362 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 258.62667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.43362 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 258.62667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.43362 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 258.62667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -50.60500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 87.65043 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -101.21000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 7 REMARK 465 GLN A 329 REMARK 465 GLY A 330 REMARK 465 ILE A 331 REMARK 465 PHE A 332 REMARK 465 GLY A 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 -2.57 80.32 REMARK 500 GLU A 62 -118.38 52.78 REMARK 500 ASN A 96 45.29 -140.66 REMARK 500 CYS A 97 -156.32 -143.41 REMARK 500 TRP A 127 53.15 -97.51 REMARK 500 SER A 143 -13.72 67.96 REMARK 500 SER A 146 -158.10 -147.31 REMARK 500 ASN A 341 118.25 -166.48 REMARK 500 PHE A 392 -110.39 -122.83 REMARK 500 GLN A 394 -129.54 -126.24 REMARK 500 GLN A 394 -128.52 -127.13 REMARK 500 ARG A 456 -125.73 53.83 REMARK 500 TYR A 470 33.05 -91.08 REMARK 500 PHE A 500 62.17 -110.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2456 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A2457 DISTANCE = 7.02 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YP2 RELATED DB: PDB REMARK 900 HAEMAGGLUTININ OF 2004 HUMAN H3N2 VIRUS REMARK 900 RELATED ID: 2YP3 RELATED DB: PDB REMARK 900 HAEMAGGLUTININ OF 2004 HUMAN H3N2 VIRUS IN COMPLEX WITH HUMAN REMARK 900 RECEPTOR ANALOGUE 6SLN REMARK 900 RELATED ID: 2YP5 RELATED DB: PDB REMARK 900 HAEMAGGLUTININ OF 2004 HUMAN H3N2 VIRUS IN COMPLEX WITH AVIAN REMARK 900 RECEPTOR ANALOGUE 3SLN REMARK 900 RELATED ID: 2YP7 RELATED DB: PDB REMARK 900 HAEMAGGLUTININ OF 2005 HUMAN H3N2 VIRUS REMARK 900 RELATED ID: 2YP8 RELATED DB: PDB REMARK 900 HAEMAGGLUTININ OF 2005 HUMAN H3N2 VIRUS IN COMPLEX WITH HUMAN REMARK 900 RECEPTOR ANALOGUE 6SLN REMARK 900 RELATED ID: 2YP9 RELATED DB: PDB REMARK 900 HAEMAGGLUTININ OF 2005 HUMAN H3N2 VIRUS IN COMPLEX WITH AVIAN REMARK 900 RECEPTOR ANALOGUE 3SLN REMARK 900 RELATED ID: 2YPG RELATED DB: PDB REMARK 900 HAEMAGGLUTININ OF 1968 HUMAN H3N2 VIRUS IN COMPLEX WITH HUMAN REMARK 900 RECEPTOR ANALOGUE LSTC DBREF 2YP4 A 1 503 UNP A0FCI1 A0FCI1_9INFA 17 519 SEQADV 2YP4 GLN A 329 UNP A0FCI1 ARG 345 ENGINEERED MUTATION SEQRES 1 A 503 GLN LYS LEU PRO GLY ASN ASP ASN SER THR ALA THR LEU SEQRES 2 A 503 CYS LEU GLY HIS HIS ALA VAL PRO ASN GLY THR ILE VAL SEQRES 3 A 503 LYS THR ILE THR ASN ASP GLN ILE GLU VAL THR ASN ALA SEQRES 4 A 503 THR GLU LEU VAL GLN SER SER SER THR GLY GLY ILE CYS SEQRES 5 A 503 ASP SER PRO HIS GLN ILE LEU ASP GLY GLU ASN CYS THR SEQRES 6 A 503 LEU ILE ASP ALA LEU LEU GLY ASP PRO GLN CYS ASP GLY SEQRES 7 A 503 PHE GLN ASN LYS LYS TRP ASP LEU PHE VAL GLU ARG SER SEQRES 8 A 503 LYS ALA TYR SER ASN CYS TYR PRO TYR ASP VAL PRO ASP SEQRES 9 A 503 TYR ALA SER LEU ARG SER LEU VAL ALA SER SER GLY THR SEQRES 10 A 503 LEU GLU PHE ASN ASN GLU SER PHE ASN TRP THR GLY VAL SEQRES 11 A 503 THR GLN ASN GLY THR SER SER ALA CYS LYS ARG ARG SER SEQRES 12 A 503 ASN ASN SER PHE PHE SER ARG LEU ASN TRP LEU THR HIS SEQRES 13 A 503 LEU LYS PHE LYS TYR PRO ALA LEU ASN VAL THR MET PRO SEQRES 14 A 503 ASN ASN GLU LYS PHE ASP LYS LEU TYR ILE TRP GLY VAL SEQRES 15 A 503 HIS HIS PRO GLY THR ASP ASN ASP GLN ILE SER LEU TYR SEQRES 16 A 503 ALA GLN ALA SER GLY ARG ILE THR VAL SER THR LYS ARG SEQRES 17 A 503 SER GLN GLN THR VAL ILE PRO ASN ILE GLY SER ARG PRO SEQRES 18 A 503 ARG VAL ARG ASP ILE PRO SER ARG ILE SER ILE TYR TRP SEQRES 19 A 503 THR ILE VAL LYS PRO GLY ASP ILE LEU LEU ILE ASN SER SEQRES 20 A 503 THR GLY ASN LEU ILE ALA PRO ARG GLY TYR PHE LYS ILE SEQRES 21 A 503 ARG SER GLY LYS SER SER ILE MET ARG SER ASP ALA PRO SEQRES 22 A 503 ILE GLY LYS CYS ASN SER GLU CYS ILE THR PRO ASN GLY SEQRES 23 A 503 SER ILE PRO ASN ASP LYS PRO PHE GLN ASN VAL ASN ARG SEQRES 24 A 503 ILE THR TYR GLY ALA CYS PRO ARG TYR VAL LYS GLN ASN SEQRES 25 A 503 THR LEU LYS LEU ALA THR GLY MET ARG ASN VAL PRO GLU SEQRES 26 A 503 LYS GLN THR GLN GLY ILE PHE GLY ALA ILE ALA GLY PHE SEQRES 27 A 503 ILE GLU ASN GLY TRP GLU GLY MET VAL ASP GLY TRP TYR SEQRES 28 A 503 GLY PHE ARG HIS GLN ASN SER GLU GLY ILE GLY GLN ALA SEQRES 29 A 503 ALA ASP LEU LYS SER THR GLN ALA ALA ILE ASN GLN ILE SEQRES 30 A 503 ASN GLY LYS LEU ASN ARG LEU ILE GLY LYS THR ASN GLU SEQRES 31 A 503 LYS PHE HIS GLN ILE GLU LYS GLU PHE SER GLU VAL GLU SEQRES 32 A 503 GLY ARG ILE GLN ASP LEU GLU LYS TYR VAL GLU ASP THR SEQRES 33 A 503 LYS ILE ASP LEU TRP SER TYR ASN ALA GLU LEU LEU VAL SEQRES 34 A 503 ALA LEU GLU ASN GLN HIS THR ILE ASP LEU THR ASP SER SEQRES 35 A 503 GLU MET ASN LYS LEU PHE GLU ARG THR LYS LYS GLN LEU SEQRES 36 A 503 ARG GLU ASN ALA GLU ASP MET GLY ASN GLY CYS PHE LYS SEQRES 37 A 503 ILE TYR HIS LYS CYS ASP ASN ALA CYS ILE GLY SER ILE SEQRES 38 A 503 ARG ASN GLY THR TYR ASP HIS ASP VAL TYR ARG ASP GLU SEQRES 39 A 503 ALA LEU ASN ASN ARG PHE GLN ILE LYS MODRES 2YP4 ASN A 38 ASN GLYCOSYLATION SITE MODRES 2YP4 ASN A 63 ASN GLYCOSYLATION SITE MODRES 2YP4 ASN A 133 ASN GLYCOSYLATION SITE MODRES 2YP4 ASN A 165 ASN GLYCOSYLATION SITE MODRES 2YP4 ASN A 246 ASN GLYCOSYLATION SITE MODRES 2YP4 ASN A 285 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET BGC C 1 12 HET GAL C 2 11 HET NAG C 3 14 HET GAL C 4 11 HET SIA C 5 20 HET NAG A1504 14 HET NAG A1505 14 HET NAG A1506 14 HET NAG A1508 14 HET NAG A1509 14 HET EPE A1512 15 HET EPE A1513 15 HET TAM A1519 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE HETSYN EPE HEPES FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 2 MAN C6 H12 O6 FORMUL 3 BGC C6 H12 O6 FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 SIA C11 H19 N O9 FORMUL 9 EPE 2(C8 H18 N2 O4 S) FORMUL 11 TAM C7 H17 N O3 FORMUL 12 HOH *457(H2 O) HELIX 1 1 THR A 65 GLY A 72 1 8 HELIX 2 2 ASP A 73 GLN A 80 5 8 HELIX 3 3 ASP A 104 GLY A 116 1 13 HELIX 4 4 THR A 187 ALA A 196 1 10 HELIX 5 5 ASP A 366 ILE A 385 1 20 HELIX 6 6 GLY A 404 ARG A 456 1 53 HELIX 7 7 ASP A 474 ASN A 483 1 10 HELIX 8 8 ASP A 487 PHE A 500 1 14 SHEET 1 AA 5 GLY A 360 ALA A 365 0 SHEET 2 AA 5 TYR A 351 ASN A 357 -1 O PHE A 353 N ALA A 364 SHEET 3 AA 5 ALA A 11 HIS A 17 -1 O THR A 12 N GLN A 356 SHEET 4 AA 5 CYS A 466 ILE A 469 -1 O PHE A 467 N LEU A 13 SHEET 5 AA 5 ALA A 459 ASP A 461 -1 O GLU A 460 N LYS A 468 SHEET 1 AB 2 THR A 24 VAL A 26 0 SHEET 2 AB 2 ILE A 34 VAL A 36 -1 O ILE A 34 N VAL A 26 SHEET 1 AC 2 ALA A 39 GLU A 41 0 SHEET 2 AC 2 LYS A 315 ALA A 317 -1 O LEU A 316 N THR A 40 SHEET 1 AD 3 VAL A 43 GLN A 44 0 SHEET 2 AD 3 PHE A 294 GLN A 295 1 O PHE A 294 N GLN A 44 SHEET 3 AD 3 ARG A 307 TYR A 308 1 O ARG A 307 N GLN A 295 SHEET 1 AE 2 ILE A 51 SER A 54 0 SHEET 2 AE 2 ILE A 274 ASN A 278 1 O GLY A 275 N ASP A 53 SHEET 1 AF 3 ILE A 58 ASP A 60 0 SHEET 2 AF 3 LEU A 86 GLU A 89 1 O LEU A 86 N LEU A 59 SHEET 3 AF 3 SER A 266 ARG A 269 1 O SER A 266 N PHE A 87 SHEET 1 AG 5 TYR A 100 ASP A 101 0 SHEET 2 AG 5 ARG A 229 VAL A 237 1 O ILE A 230 N ASP A 101 SHEET 3 AG 5 LYS A 176 HIS A 184 -1 O LYS A 176 N VAL A 237 SHEET 4 AG 5 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 AG 5 LEU A 151 TRP A 153 -1 O ASN A 152 N ALA A 253 SHEET 1 AH 5 TYR A 100 ASP A 101 0 SHEET 2 AH 5 ARG A 229 VAL A 237 1 O ILE A 230 N ASP A 101 SHEET 3 AH 5 LYS A 176 HIS A 184 -1 O LYS A 176 N VAL A 237 SHEET 4 AH 5 GLY A 256 LYS A 259 -1 O PHE A 258 N LEU A 177 SHEET 5 AH 5 PHE A 120 ASN A 122 -1 O ASN A 121 N TYR A 257 SHEET 1 AI 2 VAL A 130 THR A 131 0 SHEET 2 AI 2 THR A 155 HIS A 156 -1 O THR A 155 N THR A 131 SHEET 1 AJ 2 SER A 136 ARG A 141 0 SHEET 2 AJ 2 ASN A 144 SER A 146 -1 O ASN A 144 N ARG A 141 SHEET 1 AK 4 LEU A 164 PRO A 169 0 SHEET 2 AK 4 ILE A 242 SER A 247 -1 O LEU A 243 N MET A 168 SHEET 3 AK 4 ILE A 202 SER A 205 -1 O THR A 203 N ASN A 246 SHEET 4 AK 4 GLN A 210 VAL A 213 -1 O GLN A 211 N VAL A 204 SHEET 1 AL 4 GLY A 286 ILE A 288 0 SHEET 2 AL 4 CYS A 281 THR A 283 -1 O CYS A 281 N ILE A 288 SHEET 3 AL 4 TYR A 302 CYS A 305 -1 O TYR A 302 N ILE A 282 SHEET 4 AL 4 ASN A 389 LYS A 391 -1 O ASN A 389 N CYS A 305 SSBOND 1 CYS A 14 CYS A 466 1555 1555 2.09 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.09 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.10 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.06 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.09 SSBOND 6 CYS A 473 CYS A 477 1555 1555 2.13 LINK ND2 ASN A 38 C1 NAG A1504 1555 1555 1.44 LINK ND2 ASN A 63 C1 NAG A1505 1555 1555 1.43 LINK ND2 ASN A 133 C1 NAG A1506 1555 1555 1.45 LINK ND2 ASN A 165 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 246 C1 NAG A1509 1555 1555 1.45 LINK ND2 ASN A 285 C1 NAG A1508 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.45 LINK O4 BGC C 1 C1 GAL C 2 1555 1555 1.43 LINK O3 GAL C 2 C1 NAG C 3 1555 1555 1.42 LINK O4 NAG C 3 C1 GAL C 4 1555 1555 1.43 LINK O6 GAL C 4 C2 SIA C 5 1555 1555 1.43 CISPEP 1 SER A 54 PRO A 55 0 1.64 CRYST1 101.210 101.210 387.940 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009880 0.005704 0.000000 0.00000 SCALE2 0.000000 0.011409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002578 0.00000