data_2YPB # _entry.id 2YPB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YPB pdb_00002ypb 10.2210/pdb2ypb/pdb PDBE EBI-54643 ? ? WWPDB D_1290054643 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1HLH unspecified . PDB 2YPA unspecified 'STRUCTURE OF THE SCL:E47:LMO2:LDB1 COMPLEX BOUND TO DNA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YPB _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-10-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'El Omari, K.' 1 'Hoosdally, S.J.' 2 'Tuladhar, K.' 3 'Karia, D.' 4 'Ponsele, E.' 5 'Platonova, O.' 6 'Vyas, P.' 7 'Patient, R.' 8 'Porcher, C.' 9 'Mancini, E.J.' 10 # _citation.id primary _citation.title 'Structural Basis for Lmo2-Driven Recruitment of the Scl:E47bHLH Heterodimer to Hematopoietic-Specific Transcriptional Targets.' _citation.journal_abbrev 'Cell Rep.' _citation.journal_volume 4 _citation.page_first 135 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2211-1247 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23831025 _citation.pdbx_database_id_DOI 10.1016/J.CELREP.2013.06.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'El Omari, K.' 1 ? primary 'Hoosdally, S.J.' 2 ? primary 'Tuladhar, K.' 3 ? primary 'Karia, D.' 4 ? primary 'Hall-Ponsele, E.' 5 ? primary 'Platonova, O.' 6 ? primary 'Vyas, P.' 7 ? primary 'Patient, R.' 8 ? primary 'Porcher, C.' 9 ? primary 'Mancini, E.J.' 10 ? # _cell.entry_id 2YPB _cell.length_a 73.193 _cell.length_b 152.882 _cell.length_c 55.412 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YPB _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'T-CELL ACUTE LYMPHOCYTIC LEUKEMIA PROTEIN 1' 10721.119 1 ? ? 'BHLH, RESIDUES 5-78' ? 2 polymer man 'TRANSCRIPTION FACTOR E2-ALPHA' 9674.212 1 ? ? 'RESIDUES 535-613' ? 3 polymer syn 'EBOX FORWARD' 3284.160 1 ? ? ? ? 4 polymer syn 'EBOX REVERSE' 3422.260 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'TAL-1, CLASS A BASIC HELIX-LOOP-HELIX PROTEIN 17, BHLHA17, STEM CELL PROTEIN, T-CELL LEUKEMIA/LYMPHOMA PROTEIN 5, SCL' 2 ;CLASS B BASIC HELIX-LOOP-HELIX PROTEIN 21, BHLHB21, IMMUNOGLOBULIN ENHANCER-BINDING FACTOR E12/E47, IMMUNOGLOBULIN TRANSCRIPTION FACTOR 1, KAPPA-E2-BINDING FACTOR, TRANSCRIPTION FACTOR 3, TCF -3, TRANSCRIPTION FACTOR ITF-1, E47 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGSSHHHHHHSQDPEISDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKL LNDQEEEGTQR ; ;MGSSHHHHHHSQDPEISDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKL LNDQEEEGTQR ; A ? 2 'polypeptide(L)' no no ;MADLSLEEKDLRDRERRMANNARERVRVRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPK AA ; ;MADLSLEEKDLRDRERRMANNARERVRVRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPK AA ; B ? 3 polydeoxyribonucleotide no no '(DA)(DC)(DC)(DA)(DT)(DC)(DT)(DG)(DT)(DT)(DC)' ACCATCTGTTC E ? 4 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DC)(DA)(DG)(DA)(DT)(DG)(DG)(DT)' GAACAGATGGT F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 GLN n 1 13 ASP n 1 14 PRO n 1 15 GLU n 1 16 ILE n 1 17 SER n 1 18 ASP n 1 19 GLY n 1 20 PRO n 1 21 HIS n 1 22 THR n 1 23 LYS n 1 24 VAL n 1 25 VAL n 1 26 ARG n 1 27 ARG n 1 28 ILE n 1 29 PHE n 1 30 THR n 1 31 ASN n 1 32 SER n 1 33 ARG n 1 34 GLU n 1 35 ARG n 1 36 TRP n 1 37 ARG n 1 38 GLN n 1 39 GLN n 1 40 ASN n 1 41 VAL n 1 42 ASN n 1 43 GLY n 1 44 ALA n 1 45 PHE n 1 46 ALA n 1 47 GLU n 1 48 LEU n 1 49 ARG n 1 50 LYS n 1 51 LEU n 1 52 ILE n 1 53 PRO n 1 54 THR n 1 55 HIS n 1 56 PRO n 1 57 PRO n 1 58 ASP n 1 59 LYS n 1 60 LYS n 1 61 LEU n 1 62 SER n 1 63 LYS n 1 64 ASN n 1 65 GLU n 1 66 ILE n 1 67 LEU n 1 68 ARG n 1 69 LEU n 1 70 ALA n 1 71 MET n 1 72 LYS n 1 73 TYR n 1 74 ILE n 1 75 ASN n 1 76 PHE n 1 77 LEU n 1 78 ALA n 1 79 LYS n 1 80 LEU n 1 81 LEU n 1 82 ASN n 1 83 ASP n 1 84 GLN n 1 85 GLU n 1 86 GLU n 1 87 GLU n 1 88 GLY n 1 89 THR n 1 90 GLN n 1 91 ARG n 2 1 MET n 2 2 ALA n 2 3 ASP n 2 4 LEU n 2 5 SER n 2 6 LEU n 2 7 GLU n 2 8 GLU n 2 9 LYS n 2 10 ASP n 2 11 LEU n 2 12 ARG n 2 13 ASP n 2 14 ARG n 2 15 GLU n 2 16 ARG n 2 17 ARG n 2 18 MET n 2 19 ALA n 2 20 ASN n 2 21 ASN n 2 22 ALA n 2 23 ARG n 2 24 GLU n 2 25 ARG n 2 26 VAL n 2 27 ARG n 2 28 VAL n 2 29 ARG n 2 30 ASP n 2 31 ILE n 2 32 ASN n 2 33 GLU n 2 34 ALA n 2 35 PHE n 2 36 ARG n 2 37 GLU n 2 38 LEU n 2 39 GLY n 2 40 ARG n 2 41 MET n 2 42 CYS n 2 43 GLN n 2 44 MET n 2 45 HIS n 2 46 LEU n 2 47 LYS n 2 48 SER n 2 49 ASP n 2 50 LYS n 2 51 ALA n 2 52 GLN n 2 53 THR n 2 54 LYS n 2 55 LEU n 2 56 LEU n 2 57 ILE n 2 58 LEU n 2 59 GLN n 2 60 GLN n 2 61 ALA n 2 62 VAL n 2 63 GLN n 2 64 VAL n 2 65 ILE n 2 66 LEU n 2 67 GLY n 2 68 LEU n 2 69 GLU n 2 70 GLN n 2 71 GLN n 2 72 VAL n 2 73 ARG n 2 74 GLU n 2 75 ARG n 2 76 ASN n 2 77 LEU n 2 78 ASN n 2 79 PRO n 2 80 LYS n 2 81 ALA n 2 82 ALA n 3 1 DA n 3 2 DC n 3 3 DC n 3 4 DA n 3 5 DT n 3 6 DC n 3 7 DT n 3 8 DG n 3 9 DT n 3 10 DT n 3 11 DC n 4 1 DG n 4 2 DA n 4 3 DA n 4 4 DC n 4 5 DA n 4 6 DG n 4 7 DA n 4 8 DT n 4 9 DG n 4 10 DG n 4 11 DT n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 3 1 sample ? ? 'HOMO SAPIENS' ? 9606 ? 4 1 sample ? ? 'HOMO SAPIENS' ? 9606 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP TAL1_HUMAN 1 ? ? P17542 ? 2 UNP TFE2_HUMAN 2 ? ? P15923 ? 3 PDB 2YPB 3 ? ? 2YPB ? 4 PDB 2YPB 4 ? ? 2YPB ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YPB A 18 ? 91 ? P17542 180 ? 253 ? 180 253 2 2 2YPB B 4 ? 82 ? P15923 535 ? 613 ? 535 613 3 3 2YPB E 1 ? 11 ? 2YPB 4 ? 14 ? 4 14 4 4 2YPB F 1 ? 11 ? 2YPB 22 ? 32 ? 22 32 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YPB MET A 1 ? UNP P17542 ? ? 'expression tag' 163 1 1 2YPB GLY A 2 ? UNP P17542 ? ? 'expression tag' 164 2 1 2YPB SER A 3 ? UNP P17542 ? ? 'expression tag' 165 3 1 2YPB SER A 4 ? UNP P17542 ? ? 'expression tag' 166 4 1 2YPB HIS A 5 ? UNP P17542 ? ? 'expression tag' 167 5 1 2YPB HIS A 6 ? UNP P17542 ? ? 'expression tag' 168 6 1 2YPB HIS A 7 ? UNP P17542 ? ? 'expression tag' 169 7 1 2YPB HIS A 8 ? UNP P17542 ? ? 'expression tag' 170 8 1 2YPB HIS A 9 ? UNP P17542 ? ? 'expression tag' 171 9 1 2YPB HIS A 10 ? UNP P17542 ? ? 'expression tag' 172 10 1 2YPB SER A 11 ? UNP P17542 ? ? 'expression tag' 173 11 1 2YPB GLN A 12 ? UNP P17542 ? ? 'expression tag' 174 12 1 2YPB ASP A 13 ? UNP P17542 ? ? 'expression tag' 175 13 1 2YPB PRO A 14 ? UNP P17542 ? ? 'expression tag' 176 14 1 2YPB GLU A 15 ? UNP P17542 ? ? 'expression tag' 177 15 1 2YPB ILE A 16 ? UNP P17542 ? ? 'expression tag' 178 16 1 2YPB SER A 17 ? UNP P17542 ? ? 'expression tag' 179 17 2 2YPB MET B 1 ? UNP P15923 ? ? 'expression tag' 532 18 2 2YPB ALA B 2 ? UNP P15923 ? ? 'expression tag' 533 19 2 2YPB ASP B 3 ? UNP P15923 ? ? 'expression tag' 534 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YPB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_percent_sol 60 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '5 % (V/V) 2-METHYL-2, 4-PENTANEDIOL (MPD), 40 MM MAGNESIUM CHLORIDE, 50 MM SODIUM CACODYLATE PH 6.0 AND 2MM GLUTATHIONE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2YPB _reflns.observed_criterion_sigma_I 1.2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 3.00 _reflns.d_resolution_high 2.90 _reflns.number_obs 7203 _reflns.number_all ? _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.60 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.00 _reflns_shell.percent_possible_all 98.5 _reflns_shell.Rmerge_I_obs 0.97 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.50 _reflns_shell.pdbx_redundancy 3.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2YPB _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6860 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.44 _refine.ls_d_res_high 2.87 _refine.ls_percent_reflns_obs 96.93 _refine.ls_R_factor_obs 0.25531 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.25381 _refine.ls_R_factor_R_free 0.28828 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 331 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.B_iso_mean 117.195 _refine.aniso_B[1][1] 8.14 _refine.aniso_B[2][2] -3.96 _refine.aniso_B[3][3] -4.18 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.U VALUES WITH TLS ADDED' _refine.pdbx_starting_model 'PDB ENTRY 2YPA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 1.563 _refine.pdbx_overall_ESU_R_Free 0.413 _refine.overall_SU_ML 0.421 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 51.981 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1174 _refine_hist.pdbx_number_atoms_nucleic_acid 448 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1622 _refine_hist.d_res_high 2.87 _refine_hist.d_res_low 42.44 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.021 ? 1687 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.804 2.306 ? 2353 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.145 5.000 ? 139 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.275 22.879 ? 66 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.846 15.000 ? 249 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.082 15.000 ? 19 'X-RAY DIFFRACTION' ? r_chiral_restr 0.042 0.200 ? 261 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1114 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.057 1.500 ? 703 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 5.215 2.000 ? 1131 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 5.226 3.000 ? 984 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 7.857 4.500 ? 1222 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.873 _refine_ls_shell.d_res_low 2.947 _refine_ls_shell.number_reflns_R_work 452 _refine_ls_shell.R_factor_R_work 0.400 _refine_ls_shell.percent_reflns_obs 86.35 _refine_ls_shell.R_factor_R_free 0.331 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 16 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2YPB _struct.title 'Structure of the SCL:E47 complex bound to DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YPB _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'IMMUNE SYSTEM, HEMATOPOIESIS, LEUKEMIA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 19 ? HIS A 21 ? GLY A 181 HIS A 183 5 ? 3 HELX_P HELX_P2 2 THR A 22 ? ILE A 52 ? THR A 184 ILE A 214 1 ? 31 HELX_P HELX_P3 3 SER A 62 ? GLU A 85 ? SER A 224 GLU A 247 1 ? 24 HELX_P HELX_P4 4 GLU B 7 ? LYS B 47 ? GLU B 538 LYS B 578 1 ? 41 HELX_P HELX_P5 5 THR B 53 ? ARG B 73 ? THR B 584 ARG B 604 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D DG 10 N1 ? ? E DA 4 F DG 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog2 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DG 10 O6 ? ? E DA 4 F DG 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog3 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D DT 11 N3 ? ? E DA 4 F DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DT 11 O4 ? ? E DA 4 F DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 10 N1 ? ? E DC 5 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 10 O6 ? ? E DC 5 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 10 N2 ? ? E DC 5 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 9 N1 ? ? E DC 6 F DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 9 O6 ? ? E DC 6 F DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 9 N2 ? ? E DC 6 F DG 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 8 N3 ? ? E DA 7 F DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 8 O4 ? ? E DA 7 F DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 7 N1 ? ? E DT 8 F DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 7 N6 ? ? E DT 8 F DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 6 N1 ? ? E DC 9 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 6 O6 ? ? E DC 9 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 6 N2 ? ? E DC 9 F DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 5 N1 ? ? E DT 10 F DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 5 N6 ? ? E DT 10 F DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DG 8 N1 ? ? ? 1_555 D DC 4 N3 ? ? E DG 11 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DC 4 O2 ? ? E DG 11 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DG 8 O6 ? ? ? 1_555 D DC 4 N4 ? ? E DG 11 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 3 N1 ? ? E DT 12 F DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 3 N6 ? ? E DT 12 F DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 2 N1 ? ? E DT 13 F DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 2 N6 ? ? E DT 13 F DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 1 N1 ? ? E DC 14 F DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 1 O6 ? ? E DC 14 F DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 1 N2 ? ? E DC 14 F DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 HIS 55 A . ? HIS 217 A PRO 56 A ? PRO 218 A 1 -1.12 2 LEU 77 B . ? LEU 608 B ASN 78 B ? ASN 609 B 1 -0.20 # _database_PDB_matrix.entry_id 2YPB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YPB _atom_sites.fract_transf_matrix[1][1] 0.013663 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006541 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018047 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 163 ? ? ? A . n A 1 2 GLY 2 164 ? ? ? A . n A 1 3 SER 3 165 ? ? ? A . n A 1 4 SER 4 166 ? ? ? A . n A 1 5 HIS 5 167 ? ? ? A . n A 1 6 HIS 6 168 ? ? ? A . n A 1 7 HIS 7 169 ? ? ? A . n A 1 8 HIS 8 170 ? ? ? A . n A 1 9 HIS 9 171 ? ? ? A . n A 1 10 HIS 10 172 ? ? ? A . n A 1 11 SER 11 173 ? ? ? A . n A 1 12 GLN 12 174 ? ? ? A . n A 1 13 ASP 13 175 ? ? ? A . n A 1 14 PRO 14 176 ? ? ? A . n A 1 15 GLU 15 177 ? ? ? A . n A 1 16 ILE 16 178 ? ? ? A . n A 1 17 SER 17 179 ? ? ? A . n A 1 18 ASP 18 180 ? ? ? A . n A 1 19 GLY 19 181 181 GLY GLY A . n A 1 20 PRO 20 182 182 PRO PRO A . n A 1 21 HIS 21 183 183 HIS HIS A . n A 1 22 THR 22 184 184 THR THR A . n A 1 23 LYS 23 185 185 LYS LYS A . n A 1 24 VAL 24 186 186 VAL VAL A . n A 1 25 VAL 25 187 187 VAL VAL A . n A 1 26 ARG 26 188 188 ARG ARG A . n A 1 27 ARG 27 189 189 ARG ARG A . n A 1 28 ILE 28 190 190 ILE ILE A . n A 1 29 PHE 29 191 191 PHE PHE A . n A 1 30 THR 30 192 192 THR THR A . n A 1 31 ASN 31 193 193 ASN ASN A . n A 1 32 SER 32 194 194 SER SER A . n A 1 33 ARG 33 195 195 ARG ARG A . n A 1 34 GLU 34 196 196 GLU GLU A . n A 1 35 ARG 35 197 197 ARG ARG A . n A 1 36 TRP 36 198 198 TRP TRP A . n A 1 37 ARG 37 199 199 ARG ARG A . n A 1 38 GLN 38 200 200 GLN GLN A . n A 1 39 GLN 39 201 201 GLN GLN A . n A 1 40 ASN 40 202 202 ASN ASN A . n A 1 41 VAL 41 203 203 VAL VAL A . n A 1 42 ASN 42 204 204 ASN ASN A . n A 1 43 GLY 43 205 205 GLY GLY A . n A 1 44 ALA 44 206 206 ALA ALA A . n A 1 45 PHE 45 207 207 PHE PHE A . n A 1 46 ALA 46 208 208 ALA ALA A . n A 1 47 GLU 47 209 209 GLU GLU A . n A 1 48 LEU 48 210 210 LEU LEU A . n A 1 49 ARG 49 211 211 ARG ARG A . n A 1 50 LYS 50 212 212 LYS LYS A . n A 1 51 LEU 51 213 213 LEU LEU A . n A 1 52 ILE 52 214 214 ILE ILE A . n A 1 53 PRO 53 215 215 PRO PRO A . n A 1 54 THR 54 216 216 THR THR A . n A 1 55 HIS 55 217 217 HIS HIS A . n A 1 56 PRO 56 218 218 PRO PRO A . n A 1 57 PRO 57 219 219 PRO PRO A . n A 1 58 ASP 58 220 220 ASP ASP A . n A 1 59 LYS 59 221 221 LYS LYS A . n A 1 60 LYS 60 222 222 LYS LYS A . n A 1 61 LEU 61 223 223 LEU LEU A . n A 1 62 SER 62 224 224 SER SER A . n A 1 63 LYS 63 225 225 LYS LYS A . n A 1 64 ASN 64 226 226 ASN ASN A . n A 1 65 GLU 65 227 227 GLU GLU A . n A 1 66 ILE 66 228 228 ILE ILE A . n A 1 67 LEU 67 229 229 LEU LEU A . n A 1 68 ARG 68 230 230 ARG ARG A . n A 1 69 LEU 69 231 231 LEU LEU A . n A 1 70 ALA 70 232 232 ALA ALA A . n A 1 71 MET 71 233 233 MET MET A . n A 1 72 LYS 72 234 234 LYS LYS A . n A 1 73 TYR 73 235 235 TYR TYR A . n A 1 74 ILE 74 236 236 ILE ILE A . n A 1 75 ASN 75 237 237 ASN ASN A . n A 1 76 PHE 76 238 238 PHE PHE A . n A 1 77 LEU 77 239 239 LEU LEU A . n A 1 78 ALA 78 240 240 ALA ALA A . n A 1 79 LYS 79 241 241 LYS LYS A . n A 1 80 LEU 80 242 242 LEU LEU A . n A 1 81 LEU 81 243 243 LEU LEU A . n A 1 82 ASN 82 244 244 ASN ASN A . n A 1 83 ASP 83 245 245 ASP ASP A . n A 1 84 GLN 84 246 246 GLN GLN A . n A 1 85 GLU 85 247 247 GLU GLU A . n A 1 86 GLU 86 248 ? ? ? A . n A 1 87 GLU 87 249 ? ? ? A . n A 1 88 GLY 88 250 ? ? ? A . n A 1 89 THR 89 251 ? ? ? A . n A 1 90 GLN 90 252 ? ? ? A . n A 1 91 ARG 91 253 ? ? ? A . n B 2 1 MET 1 532 ? ? ? B . n B 2 2 ALA 2 533 ? ? ? B . n B 2 3 ASP 3 534 ? ? ? B . n B 2 4 LEU 4 535 ? ? ? B . n B 2 5 SER 5 536 536 SER SER B . n B 2 6 LEU 6 537 537 LEU LEU B . n B 2 7 GLU 7 538 538 GLU GLU B . n B 2 8 GLU 8 539 539 GLU GLU B . n B 2 9 LYS 9 540 540 LYS LYS B . n B 2 10 ASP 10 541 541 ASP ASP B . n B 2 11 LEU 11 542 542 LEU LEU B . n B 2 12 ARG 12 543 543 ARG ARG B . n B 2 13 ASP 13 544 544 ASP ASP B . n B 2 14 ARG 14 545 545 ARG ARG B . n B 2 15 GLU 15 546 546 GLU GLU B . n B 2 16 ARG 16 547 547 ARG ARG B . n B 2 17 ARG 17 548 548 ARG ARG B . n B 2 18 MET 18 549 549 MET MET B . n B 2 19 ALA 19 550 550 ALA ALA B . n B 2 20 ASN 20 551 551 ASN ASN B . n B 2 21 ASN 21 552 552 ASN ASN B . n B 2 22 ALA 22 553 553 ALA ALA B . n B 2 23 ARG 23 554 554 ARG ARG B . n B 2 24 GLU 24 555 555 GLU GLU B . n B 2 25 ARG 25 556 556 ARG ARG B . n B 2 26 VAL 26 557 557 VAL VAL B . n B 2 27 ARG 27 558 558 ARG ARG B . n B 2 28 VAL 28 559 559 VAL VAL B . n B 2 29 ARG 29 560 560 ARG ARG B . n B 2 30 ASP 30 561 561 ASP ASP B . n B 2 31 ILE 31 562 562 ILE ILE B . n B 2 32 ASN 32 563 563 ASN ASN B . n B 2 33 GLU 33 564 564 GLU GLU B . n B 2 34 ALA 34 565 565 ALA ALA B . n B 2 35 PHE 35 566 566 PHE PHE B . n B 2 36 ARG 36 567 567 ARG ARG B . n B 2 37 GLU 37 568 568 GLU GLU B . n B 2 38 LEU 38 569 569 LEU LEU B . n B 2 39 GLY 39 570 570 GLY GLY B . n B 2 40 ARG 40 571 571 ARG ARG B . n B 2 41 MET 41 572 572 MET MET B . n B 2 42 CYS 42 573 573 CYS CYS B . n B 2 43 GLN 43 574 574 GLN GLN B . n B 2 44 MET 44 575 575 MET MET B . n B 2 45 HIS 45 576 576 HIS HIS B . n B 2 46 LEU 46 577 577 LEU LEU B . n B 2 47 LYS 47 578 578 LYS LYS B . n B 2 48 SER 48 579 579 SER SER B . n B 2 49 ASP 49 580 580 ASP ASP B . n B 2 50 LYS 50 581 581 LYS LYS B . n B 2 51 ALA 51 582 582 ALA ALA B . n B 2 52 GLN 52 583 583 GLN GLN B . n B 2 53 THR 53 584 584 THR THR B . n B 2 54 LYS 54 585 585 LYS LYS B . n B 2 55 LEU 55 586 586 LEU LEU B . n B 2 56 LEU 56 587 587 LEU LEU B . n B 2 57 ILE 57 588 588 ILE ILE B . n B 2 58 LEU 58 589 589 LEU LEU B . n B 2 59 GLN 59 590 590 GLN GLN B . n B 2 60 GLN 60 591 591 GLN GLN B . n B 2 61 ALA 61 592 592 ALA ALA B . n B 2 62 VAL 62 593 593 VAL VAL B . n B 2 63 GLN 63 594 594 GLN GLN B . n B 2 64 VAL 64 595 595 VAL VAL B . n B 2 65 ILE 65 596 596 ILE ILE B . n B 2 66 LEU 66 597 597 LEU LEU B . n B 2 67 GLY 67 598 598 GLY GLY B . n B 2 68 LEU 68 599 599 LEU LEU B . n B 2 69 GLU 69 600 600 GLU GLU B . n B 2 70 GLN 70 601 601 GLN GLN B . n B 2 71 GLN 71 602 602 GLN GLN B . n B 2 72 VAL 72 603 603 VAL VAL B . n B 2 73 ARG 73 604 604 ARG ARG B . n B 2 74 GLU 74 605 605 GLU GLU B . n B 2 75 ARG 75 606 606 ARG ARG B . n B 2 76 ASN 76 607 607 ASN ASN B . n B 2 77 LEU 77 608 608 LEU LEU B . n B 2 78 ASN 78 609 609 ASN ASN B . n B 2 79 PRO 79 610 ? ? ? B . n B 2 80 LYS 80 611 ? ? ? B . n B 2 81 ALA 81 612 ? ? ? B . n B 2 82 ALA 82 613 ? ? ? B . n C 3 1 DA 1 4 4 DA DA E . n C 3 2 DC 2 5 5 DC DC E . n C 3 3 DC 3 6 6 DC DC E . n C 3 4 DA 4 7 7 DA DA E . n C 3 5 DT 5 8 8 DT DT E . n C 3 6 DC 6 9 9 DC DC E . n C 3 7 DT 7 10 10 DT DT E . n C 3 8 DG 8 11 11 DG DG E . n C 3 9 DT 9 12 12 DT DT E . n C 3 10 DT 10 13 13 DT DT E . n C 3 11 DC 11 14 14 DC DC E . n D 4 1 DG 1 22 22 DG DG F . n D 4 2 DA 2 23 23 DA DA F . n D 4 3 DA 3 24 24 DA DA F . n D 4 4 DC 4 25 25 DC DC F . n D 4 5 DA 5 26 26 DA DA F . n D 4 6 DG 6 27 27 DG DG F . n D 4 7 DA 7 28 28 DA DA F . n D 4 8 DT 8 29 29 DT DT F . n D 4 9 DG 9 30 30 DG DG F . n D 4 10 DG 10 31 31 DG DG F . n D 4 11 DT 11 32 32 DT DT F . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5510 ? 1 MORE -54.0 ? 1 'SSA (A^2)' 12940 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-31 2 'Structure model' 1 1 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_database_status 5 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -8.0130 -46.2700 -3.5410 0.8610 0.5300 0.6681 0.1199 0.4390 -0.1208 13.2925 18.3260 16.7706 -7.5370 13.7342 -2.0106 0.5578 0.3382 -1.1086 -0.0052 0.6270 -0.0120 1.1125 0.6932 -1.1848 'X-RAY DIFFRACTION' 2 ? refined -11.9770 -32.8450 -4.3050 0.1919 0.6935 0.8415 -0.1924 -0.1142 0.5951 12.7289 38.0984 29.7179 -21.4116 6.2059 -3.7962 0.7419 -0.3602 0.7458 -1.3750 0.1718 -2.0729 -0.9591 -0.4081 -0.9137 'X-RAY DIFFRACTION' 3 ? refined -18.8370 -20.4810 -5.1900 0.1308 0.5512 0.3710 0.1320 0.0634 -0.1493 17.9451 35.3410 15.8600 -24.0896 -1.1083 -5.2105 -0.0034 -0.5787 0.2992 -0.1560 0.5338 -0.1377 0.0901 -0.0115 -0.5304 'X-RAY DIFFRACTION' 4 ? refined -24.2820 -7.0440 -11.8630 0.3656 0.3993 0.4545 0.2536 -0.0208 -0.1390 9.8831 14.1802 5.3906 2.6408 0.5399 0.5582 -0.0621 0.1488 0.8621 -0.3781 0.1815 0.8544 -0.6198 -0.0152 -0.1194 'X-RAY DIFFRACTION' 5 ? refined -34.1650 -46.6180 -23.5010 1.8356 1.0065 0.7633 -0.3891 -0.1288 -0.1284 40.6780 49.2991 3.5091 26.7180 8.4625 11.7436 0.2186 0.7630 -3.0357 0.1515 0.2889 -0.2609 0.9838 -0.1556 -0.5075 'X-RAY DIFFRACTION' 6 ? refined -25.1050 -30.3160 -21.9670 0.3434 0.3942 0.3121 0.1835 0.0016 -0.0761 12.6619 49.1202 2.6794 20.5446 2.5068 9.9253 -0.1850 0.6043 0.7326 0.4766 0.4146 0.2900 0.2614 -0.0472 -0.2297 'X-RAY DIFFRACTION' 7 ? refined -11.0610 -13.7130 -16.9980 0.7539 0.6625 0.5072 -0.2294 0.1497 -0.0325 7.8845 12.4013 0.7150 4.1286 -1.3325 -2.3833 -0.1175 1.0337 0.5539 -0.9321 0.0730 -0.7363 -0.1563 0.1716 0.0446 'X-RAY DIFFRACTION' 8 ? refined -14.6900 -2.3500 -6.7200 0.6430 0.4813 0.9281 -0.0140 -0.0801 -0.1292 0.7546 33.6952 7.2252 -4.3699 -2.0215 12.3238 0.0196 -0.0224 0.3722 1.5345 -0.0919 -0.9004 -0.5930 -0.1447 0.0723 'X-RAY DIFFRACTION' 9 ? refined -23.9970 -32.8520 -11.0250 0.5169 0.3646 0.2139 0.0903 0.1829 -0.0777 17.1760 15.3942 0.1739 -8.8029 -1.5754 1.2542 0.6500 0.5916 0.0361 -1.0431 -0.6489 0.7929 -0.1203 -0.0634 -0.0011 'X-RAY DIFFRACTION' 10 ? refined -6.8240 -36.2940 -18.3000 0.3572 0.6092 0.2278 0.2134 0.2512 0.1147 16.4274 18.8246 0.8074 10.3768 -0.1616 2.9549 -0.5924 0.3201 -0.0722 0.4234 0.3782 0.5694 0.2885 0.1916 0.2142 'X-RAY DIFFRACTION' 11 ? refined -8.1230 -30.5920 -12.9730 0.2484 0.2772 0.1412 -0.0188 0.1167 -0.0332 13.5870 11.2194 10.1603 -2.0712 7.6965 -3.0881 0.4433 -0.3264 0.3157 0.3092 -0.3342 -0.1096 0.7237 0.3275 -0.1092 'X-RAY DIFFRACTION' 12 ? refined -26.3250 -37.2580 -13.6580 0.3867 0.3522 0.3195 0.0148 0.0775 0.0617 4.8538 10.6468 11.6340 3.6689 3.8142 -0.7463 0.4314 -0.5381 -0.4168 0.7409 -0.1390 0.7808 -0.6675 -0.6092 -0.2925 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 182 ? ? A 192 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 193 ? ? A 199 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 200 ? ? A 211 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 212 ? ? A 247 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 539 ? ? B 548 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 549 ? ? B 562 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 563 ? ? B 586 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 587 ? ? B 609 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 E 4 ? ? E 10 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 E 11 ? ? E 14 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 F 22 ? ? F 26 ? ? ? ? 'X-RAY DIFFRACTION' 12 12 F 27 ? ? F 32 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0109 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" E DT 8 ? ? "C1'" E DT 8 ? ? N1 E DT 8 ? ? 110.29 108.30 1.99 0.30 N 2 1 "O4'" E DT 12 ? ? "C1'" E DT 12 ? ? N1 E DT 12 ? ? 110.23 108.30 1.93 0.30 N 3 1 "O4'" F DG 31 ? ? "C1'" F DG 31 ? ? N9 F DG 31 ? ? 110.60 108.30 2.30 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ASN 609 ? CG ? B ASN 78 CG 2 1 Y 1 B ASN 609 ? OD1 ? B ASN 78 OD1 3 1 Y 1 B ASN 609 ? ND2 ? B ASN 78 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 163 ? A MET 1 2 1 Y 1 A GLY 164 ? A GLY 2 3 1 Y 1 A SER 165 ? A SER 3 4 1 Y 1 A SER 166 ? A SER 4 5 1 Y 1 A HIS 167 ? A HIS 5 6 1 Y 1 A HIS 168 ? A HIS 6 7 1 Y 1 A HIS 169 ? A HIS 7 8 1 Y 1 A HIS 170 ? A HIS 8 9 1 Y 1 A HIS 171 ? A HIS 9 10 1 Y 1 A HIS 172 ? A HIS 10 11 1 Y 1 A SER 173 ? A SER 11 12 1 Y 1 A GLN 174 ? A GLN 12 13 1 Y 1 A ASP 175 ? A ASP 13 14 1 Y 1 A PRO 176 ? A PRO 14 15 1 Y 1 A GLU 177 ? A GLU 15 16 1 Y 1 A ILE 178 ? A ILE 16 17 1 Y 1 A SER 179 ? A SER 17 18 1 Y 1 A ASP 180 ? A ASP 18 19 1 Y 1 A GLU 248 ? A GLU 86 20 1 Y 1 A GLU 249 ? A GLU 87 21 1 Y 1 A GLY 250 ? A GLY 88 22 1 Y 1 A THR 251 ? A THR 89 23 1 Y 1 A GLN 252 ? A GLN 90 24 1 Y 1 A ARG 253 ? A ARG 91 25 1 Y 1 B MET 532 ? B MET 1 26 1 Y 1 B ALA 533 ? B ALA 2 27 1 Y 1 B ASP 534 ? B ASP 3 28 1 Y 1 B LEU 535 ? B LEU 4 29 1 Y 1 B PRO 610 ? B PRO 79 30 1 Y 1 B LYS 611 ? B LYS 80 31 1 Y 1 B ALA 612 ? B ALA 81 32 1 Y 1 B ALA 613 ? B ALA 82 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TRP N N N N 461 TRP CA C N S 462 TRP C C N N 463 TRP O O N N 464 TRP CB C N N 465 TRP CG C Y N 466 TRP CD1 C Y N 467 TRP CD2 C Y N 468 TRP NE1 N Y N 469 TRP CE2 C Y N 470 TRP CE3 C Y N 471 TRP CZ2 C Y N 472 TRP CZ3 C Y N 473 TRP CH2 C Y N 474 TRP OXT O N N 475 TRP H H N N 476 TRP H2 H N N 477 TRP HA H N N 478 TRP HB2 H N N 479 TRP HB3 H N N 480 TRP HD1 H N N 481 TRP HE1 H N N 482 TRP HE3 H N N 483 TRP HZ2 H N N 484 TRP HZ3 H N N 485 TRP HH2 H N N 486 TRP HXT H N N 487 TYR N N N N 488 TYR CA C N S 489 TYR C C N N 490 TYR O O N N 491 TYR CB C N N 492 TYR CG C Y N 493 TYR CD1 C Y N 494 TYR CD2 C Y N 495 TYR CE1 C Y N 496 TYR CE2 C Y N 497 TYR CZ C Y N 498 TYR OH O N N 499 TYR OXT O N N 500 TYR H H N N 501 TYR H2 H N N 502 TYR HA H N N 503 TYR HB2 H N N 504 TYR HB3 H N N 505 TYR HD1 H N N 506 TYR HD2 H N N 507 TYR HE1 H N N 508 TYR HE2 H N N 509 TYR HH H N N 510 TYR HXT H N N 511 VAL N N N N 512 VAL CA C N S 513 VAL C C N N 514 VAL O O N N 515 VAL CB C N N 516 VAL CG1 C N N 517 VAL CG2 C N N 518 VAL OXT O N N 519 VAL H H N N 520 VAL H2 H N N 521 VAL HA H N N 522 VAL HB H N N 523 VAL HG11 H N N 524 VAL HG12 H N N 525 VAL HG13 H N N 526 VAL HG21 H N N 527 VAL HG22 H N N 528 VAL HG23 H N N 529 VAL HXT H N N 530 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TRP N CA sing N N 453 TRP N H sing N N 454 TRP N H2 sing N N 455 TRP CA C sing N N 456 TRP CA CB sing N N 457 TRP CA HA sing N N 458 TRP C O doub N N 459 TRP C OXT sing N N 460 TRP CB CG sing N N 461 TRP CB HB2 sing N N 462 TRP CB HB3 sing N N 463 TRP CG CD1 doub Y N 464 TRP CG CD2 sing Y N 465 TRP CD1 NE1 sing Y N 466 TRP CD1 HD1 sing N N 467 TRP CD2 CE2 doub Y N 468 TRP CD2 CE3 sing Y N 469 TRP NE1 CE2 sing Y N 470 TRP NE1 HE1 sing N N 471 TRP CE2 CZ2 sing Y N 472 TRP CE3 CZ3 doub Y N 473 TRP CE3 HE3 sing N N 474 TRP CZ2 CH2 doub Y N 475 TRP CZ2 HZ2 sing N N 476 TRP CZ3 CH2 sing Y N 477 TRP CZ3 HZ3 sing N N 478 TRP CH2 HH2 sing N N 479 TRP OXT HXT sing N N 480 TYR N CA sing N N 481 TYR N H sing N N 482 TYR N H2 sing N N 483 TYR CA C sing N N 484 TYR CA CB sing N N 485 TYR CA HA sing N N 486 TYR C O doub N N 487 TYR C OXT sing N N 488 TYR CB CG sing N N 489 TYR CB HB2 sing N N 490 TYR CB HB3 sing N N 491 TYR CG CD1 doub Y N 492 TYR CG CD2 sing Y N 493 TYR CD1 CE1 sing Y N 494 TYR CD1 HD1 sing N N 495 TYR CD2 CE2 doub Y N 496 TYR CD2 HD2 sing N N 497 TYR CE1 CZ doub Y N 498 TYR CE1 HE1 sing N N 499 TYR CE2 CZ sing Y N 500 TYR CE2 HE2 sing N N 501 TYR CZ OH sing N N 502 TYR OH HH sing N N 503 TYR OXT HXT sing N N 504 VAL N CA sing N N 505 VAL N H sing N N 506 VAL N H2 sing N N 507 VAL CA C sing N N 508 VAL CA CB sing N N 509 VAL CA HA sing N N 510 VAL C O doub N N 511 VAL C OXT sing N N 512 VAL CB CG1 sing N N 513 VAL CB CG2 sing N N 514 VAL CB HB sing N N 515 VAL CG1 HG11 sing N N 516 VAL CG1 HG12 sing N N 517 VAL CG1 HG13 sing N N 518 VAL CG2 HG21 sing N N 519 VAL CG2 HG22 sing N N 520 VAL CG2 HG23 sing N N 521 VAL OXT HXT sing N N 522 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2YPB 'double helix' 2YPB 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DA 1 1_555 D DT 11 1_555 -0.379 -0.424 1.067 -5.156 14.963 2.744 1 E_DA4:DT32_F E 4 ? F 32 ? 20 1 1 C DC 2 1_555 D DG 10 1_555 0.200 -0.317 1.195 -0.733 19.841 -3.376 2 E_DC5:DG31_F E 5 ? F 31 ? 19 1 1 C DC 3 1_555 D DG 9 1_555 0.023 -0.275 -0.756 0.532 -18.899 -2.926 3 E_DC6:DG30_F E 6 ? F 30 ? 19 1 1 C DA 4 1_555 D DT 8 1_555 0.155 -0.174 0.478 -12.362 -7.093 0.083 4 E_DA7:DT29_F E 7 ? F 29 ? 20 1 1 C DT 5 1_555 D DA 7 1_555 -0.104 0.003 0.748 -9.364 -8.830 0.218 5 E_DT8:DA28_F E 8 ? F 28 ? 20 1 1 C DC 6 1_555 D DG 6 1_555 0.317 -0.233 -0.101 6.882 -8.465 -2.114 6 E_DC9:DG27_F E 9 ? F 27 ? 19 1 1 C DT 7 1_555 D DA 5 1_555 -0.023 -0.203 -0.214 -3.183 -10.264 1.246 7 E_DT10:DA26_F E 10 ? F 26 ? 20 1 1 C DG 8 1_555 D DC 4 1_555 0.230 -0.006 0.274 2.266 -6.663 1.717 8 E_DG11:DC25_F E 11 ? F 25 ? 19 1 1 C DT 9 1_555 D DA 3 1_555 0.137 0.010 0.455 -1.786 -13.104 -4.561 9 E_DT12:DA24_F E 12 ? F 24 ? 20 1 1 C DT 10 1_555 D DA 2 1_555 -0.131 -0.090 0.804 -0.131 -15.056 1.323 10 E_DT13:DA23_F E 13 ? F 23 ? 20 1 1 C DC 11 1_555 D DG 1 1_555 0.795 -0.162 0.783 -0.166 -7.130 -0.184 11 E_DC14:DG22_F E 14 ? F 22 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DA 1 1_555 D DT 11 1_555 C DC 2 1_555 D DG 10 1_555 -0.351 -1.265 3.547 -1.691 -7.679 37.456 -0.844 0.297 3.736 -11.799 2.598 38.243 1 EE_DA4DC5:DG31DT32_FF E 4 ? F 32 ? E 5 ? F 31 ? 1 C DC 2 1_555 D DG 10 1_555 C DC 3 1_555 D DG 9 1_555 0.044 -1.029 3.297 20.263 -2.129 30.342 -1.342 2.835 2.844 -3.602 -34.287 36.414 2 EE_DC5DC6:DG30DG31_FF E 5 ? F 31 ? E 6 ? F 30 ? 1 C DC 3 1_555 D DG 9 1_555 C DA 4 1_555 D DT 8 1_555 0.109 0.552 3.837 -7.798 8.417 39.260 -0.310 -1.177 3.784 12.213 11.316 40.839 3 EE_DC6DA7:DT29DG30_FF E 6 ? F 30 ? E 7 ? F 29 ? 1 C DA 4 1_555 D DT 8 1_555 C DT 5 1_555 D DA 7 1_555 -0.150 -0.840 3.270 -2.223 -0.895 25.684 -1.631 -0.288 3.298 -2.007 4.987 25.794 4 EE_DA7DT8:DA28DT29_FF E 7 ? F 29 ? E 8 ? F 28 ? 1 C DT 5 1_555 D DA 7 1_555 C DC 6 1_555 D DG 6 1_555 0.066 -0.018 2.843 7.344 -4.374 39.221 0.409 0.635 2.796 -6.424 -10.785 40.106 5 EE_DT8DC9:DG27DA28_FF E 8 ? F 28 ? E 9 ? F 27 ? 1 C DC 6 1_555 D DG 6 1_555 C DT 7 1_555 D DA 5 1_555 1.144 -0.358 3.327 7.772 9.321 31.305 -2.224 -0.647 3.275 16.517 -13.772 33.521 6 EE_DC9DT10:DA26DG27_FF E 9 ? F 27 ? E 10 ? F 26 ? 1 C DT 7 1_555 D DA 5 1_555 C DG 8 1_555 D DC 4 1_555 -0.005 0.250 3.127 -3.637 10.513 36.926 -0.884 -0.430 3.070 16.153 5.589 38.510 7 EE_DT10DG11:DC25DA26_FF E 10 ? F 26 ? E 11 ? F 25 ? 1 C DG 8 1_555 D DC 4 1_555 C DT 9 1_555 D DA 3 1_555 -0.655 -1.116 3.281 -0.647 -2.908 31.631 -1.495 1.076 3.379 -5.320 1.184 31.767 8 EE_DG11DT12:DA24DC25_FF E 11 ? F 25 ? E 12 ? F 24 ? 1 C DT 9 1_555 D DA 3 1_555 C DT 10 1_555 D DA 2 1_555 0.340 -0.619 3.084 0.629 1.711 33.228 -1.349 -0.495 3.055 2.990 -1.098 33.277 9 EE_DT12DT13:DA23DA24_FF E 12 ? F 24 ? E 13 ? F 23 ? 1 C DT 10 1_555 D DA 2 1_555 C DC 11 1_555 D DG 1 1_555 0.583 -0.369 3.214 1.415 -2.347 39.099 -0.272 -0.702 3.248 -3.502 -2.111 39.191 10 EE_DT13DC14:DG22DA23_FF E 13 ? F 23 ? E 14 ? F 22 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2YPA _pdbx_initial_refinement_model.details 'PDB ENTRY 2YPA' #