HEADER IMMUNE SYSTEM 01-NOV-12 2YPV TITLE CRYSTAL STRUCTURE OF THE MENINGOCOCCAL VACCINE ANTIGEN FACTOR H TITLE 2 BINDING PROTEIN IN COMPLEX WITH A BACTERICIDAL ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIPOPROTEIN GNA1870, FACTOR H BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAB 12C1; COMPND 8 CHAIN: H; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: FAB 12C1; COMPND 11 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS MC58; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 VARIANT: 1.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-21B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 17 ORGANISM_TAXID: 10090 KEYWDS IMMUNE SYSTEM, VACCINE, MONOCLONAL ANTIBODY, MAB, EPITOPE MAPPING EXPDTA X-RAY DIFFRACTION AUTHOR E.MALITO,D.VEGGI,M.J.BOTTOMLEY REVDAT 3 20-DEC-23 2YPV 1 REMARK REVDAT 2 20-MAR-13 2YPV 1 JRNL REVDAT 1 20-FEB-13 2YPV 0 JRNL AUTH E.MALITO,A.FALERI,P.LO SURDO,D.VEGGI,G.MARUGGI,E.GRASSI, JRNL AUTH 2 E.CARTOCCI,I.BERTOLDI,A.GENOVESE,L.SANTINI,G.ROMAGNOLI, JRNL AUTH 3 E.BORGOGNI,S.BRIER,C.LO PASSO,M.DOMINA,F.CASTELLINO, JRNL AUTH 4 F.FELICI,S.VAN DER VEEN,S.JOHNSON,S.M.LEA,C.M.TANG,M.PIZZA, JRNL AUTH 5 S.SAVINO,N.NORAIS,R.RAPPUOLI,M.J.BOTTOMLEY,V.MASIGNANI JRNL TITL DEFINING A PROTECTIVE EPITOPE ON FACTOR H BINDING PROTEIN, A JRNL TITL 2 KEY MENINGOCOCCAL VIRULENCE FACTOR AND VACCINE ANTIGEN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 3304 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23396847 JRNL DOI 10.1073/PNAS.1222845110 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 69144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5403 - 5.2593 1.00 2832 151 0.1900 0.2138 REMARK 3 2 5.2593 - 4.1759 1.00 2735 131 0.1378 0.1566 REMARK 3 3 4.1759 - 3.6485 1.00 2684 136 0.1583 0.2018 REMARK 3 4 3.6485 - 3.3151 1.00 2678 130 0.1711 0.1875 REMARK 3 5 3.3151 - 3.0776 1.00 2645 141 0.1901 0.2561 REMARK 3 6 3.0776 - 2.8962 1.00 2626 152 0.1869 0.2484 REMARK 3 7 2.8962 - 2.7512 1.00 2623 144 0.1841 0.2260 REMARK 3 8 2.7512 - 2.6314 1.00 2638 128 0.1924 0.2477 REMARK 3 9 2.6314 - 2.5302 1.00 2627 143 0.1822 0.2263 REMARK 3 10 2.5302 - 2.4429 1.00 2611 132 0.1780 0.2313 REMARK 3 11 2.4429 - 2.3665 1.00 2634 135 0.1809 0.1975 REMARK 3 12 2.3665 - 2.2988 1.00 2594 146 0.1747 0.2208 REMARK 3 13 2.2988 - 2.2383 1.00 2585 150 0.1823 0.2329 REMARK 3 14 2.2383 - 2.1837 1.00 2598 129 0.1790 0.2413 REMARK 3 15 2.1837 - 2.1341 1.00 2610 163 0.1896 0.2467 REMARK 3 16 2.1341 - 2.0887 1.00 2596 132 0.1883 0.2437 REMARK 3 17 2.0887 - 2.0469 1.00 2547 164 0.1968 0.2610 REMARK 3 18 2.0469 - 2.0083 1.00 2610 135 0.1963 0.2357 REMARK 3 19 2.0083 - 1.9724 1.00 2598 133 0.2047 0.2439 REMARK 3 20 1.9724 - 1.9390 1.00 2614 146 0.2060 0.2600 REMARK 3 21 1.9390 - 1.9077 1.00 2551 138 0.2211 0.2825 REMARK 3 22 1.9077 - 1.8783 1.00 2659 121 0.2199 0.2752 REMARK 3 23 1.8783 - 1.8507 1.00 2567 121 0.2314 0.2955 REMARK 3 24 1.8507 - 1.8247 1.00 2585 155 0.2528 0.3248 REMARK 3 25 1.8247 - 1.8000 1.00 2594 147 0.2706 0.3241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5169 REMARK 3 ANGLE : 1.514 6978 REMARK 3 CHIRALITY : 0.111 776 REMARK 3 PLANARITY : 0.006 894 REMARK 3 DIHEDRAL : 13.955 1872 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED REGIONS IN CHAIN A INCLUDE REMARK 3 RESIDUES V8-A14 E83- Q87 AND Q115-K122. DISORDERED REGION IN REMARK 3 CHAIN H INCLUDE RESIDUES G135-T137. REMARK 4 REMARK 4 2YPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1290054701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69157 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2W80 1KB5 3LIZ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M AMMONIUM SULFATE, REMARK 280 PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.40000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.37500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.37500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.40000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 11 REMARK 465 ILE A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 83 REMARK 465 VAL A 84 REMARK 465 ASP A 85 REMARK 465 GLY A 86 REMARK 465 GLN A 87 REMARK 465 GLN A 115 REMARK 465 ASP A 116 REMARK 465 SER A 117 REMARK 465 GLU A 118 REMARK 465 HIS A 119 REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 LYS A 122 REMARK 465 GLY H 135 REMARK 465 ASP H 136 REMARK 465 THR H 137 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 EDO A 1259 O HOH H 2178 4445 1.92 REMARK 500 O HOH A 2108 O HOH H 2019 1455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 -74.34 -125.56 REMARK 500 GLN A 101 -168.18 -114.76 REMARK 500 LYS A 126 118.88 -169.08 REMARK 500 LYS H 43 -85.88 -127.47 REMARK 500 ALA H 92 179.72 178.15 REMARK 500 TYR H 100 -45.65 -151.00 REMARK 500 GLN H 177 -92.70 -124.31 REMARK 500 SER H 178 47.51 -89.39 REMARK 500 ALA L 51 -36.35 72.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY H 133 CYS H 134 148.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H2046 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH H2074 DISTANCE = 5.83 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AC" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 1219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 1220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 1223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO L 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1259 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE MAB 12C1 WAS FULLY SEQUENCED ISOLATING RNA FROM MURINE REMARK 999 HYBRIDOMA CELLS, FROM WHICH CDNA WAS PREPARED USING REMARK 999 STANDARD METHODS. THE MAB HEAVY AND LIGHT CHAINS WERE REMARK 999 AMPLIFIED FROM THE CDNA BY PCR USING A SET OF DEGENERATE REMARK 999 PRIMERS DESIGNED BASED ON MOUSE FRAMEWORKS SEQUENCES. DBREF 2YPV A 4 255 UNP Q6QCC2 Q6QCC2_NEIME 23 274 DBREF 2YPV H 1 218 PDB 2YPV 2YPV 1 218 DBREF 2YPV L 1 214 PDB 2YPV 2YPV 1 214 SEQADV 2YPV LEU A 256 UNP Q6QCC2 EXPRESSION TAG SEQRES 1 A 253 GLY GLY GLY GLY VAL ALA ALA ASP ILE GLY ALA GLY LEU SEQRES 2 A 253 ALA ASP ALA LEU THR ALA PRO LEU ASP HIS LYS ASP LYS SEQRES 3 A 253 GLY LEU GLN SER LEU THR LEU ASP GLN SER VAL ARG LYS SEQRES 4 A 253 ASN GLU LYS LEU LYS LEU ALA ALA GLN GLY ALA GLU LYS SEQRES 5 A 253 THR TYR GLY ASN GLY ASP SER LEU ASN THR GLY LYS LEU SEQRES 6 A 253 LYS ASN ASP LYS VAL SER ARG PHE ASP PHE ILE ARG GLN SEQRES 7 A 253 ILE GLU VAL ASP GLY GLN LEU ILE THR LEU GLU SER GLY SEQRES 8 A 253 GLU PHE GLN VAL TYR LYS GLN SER HIS SER ALA LEU THR SEQRES 9 A 253 ALA PHE GLN THR GLU GLN ILE GLN ASP SER GLU HIS SER SEQRES 10 A 253 GLY LYS MET VAL ALA LYS ARG GLN PHE ARG ILE GLY ASP SEQRES 11 A 253 ILE ALA GLY GLU HIS THR SER PHE ASP LYS LEU PRO GLU SEQRES 12 A 253 GLY GLY ARG ALA THR TYR ARG GLY THR ALA PHE GLY SER SEQRES 13 A 253 ASP ASP ALA GLY GLY LYS LEU THR TYR THR ILE ASP PHE SEQRES 14 A 253 ALA ALA LYS GLN GLY ASN GLY LYS ILE GLU HIS LEU LYS SEQRES 15 A 253 SER PRO GLU LEU ASN VAL ASP LEU ALA ALA ALA ASP ILE SEQRES 16 A 253 LYS PRO ASP GLY LYS ARG HIS ALA VAL ILE SER GLY SER SEQRES 17 A 253 VAL LEU TYR ASN GLN ALA GLU LYS GLY SER TYR SER LEU SEQRES 18 A 253 GLY ILE PHE GLY GLY LYS ALA GLN GLU VAL ALA GLY SER SEQRES 19 A 253 ALA GLU VAL LYS THR VAL ASN GLY ILE ARG HIS ILE GLY SEQRES 20 A 253 LEU ALA ALA LYS GLN LEU SEQRES 1 H 218 GLN VAL GLN LEU GLN GLU SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 218 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 H 218 TYR SER PHE SER ASP TYR ASN MET SER TRP VAL LYS GLN SEQRES 4 H 218 SER ASN GLY LYS SER LEU GLU TRP ILE GLY ILE ILE ASP SEQRES 5 H 218 PRO LYS TYR GLY THR ILE ASN TYR ASN GLN LYS PHE LYS SEQRES 6 H 218 GLY LYS ALA THR LEU THR VAL ASP GLN ALA SER SER THR SEQRES 7 H 218 ALA TYR MET GLN LEU ASN SER LEU THR SER GLU ASP SER SEQRES 8 H 218 ALA VAL TYR TYR CYS VAL ARG ASP TYR TYR GLY SER SER SEQRES 9 H 218 TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SEQRES 10 H 218 SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 218 ALA PRO GLY CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 H 218 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SER VAL SEQRES 13 H 218 THR VAL THR TRP ASN SER GLY SER LEU SER SER SER VAL SEQRES 14 H 218 HIS THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR THR SEQRES 15 H 218 MET SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 218 SER GLN THR VAL THR CYS SER VAL ALA HIS PRO ALA SER SEQRES 17 H 218 SER THR THR VAL ASP LYS LYS LEU CYS ARG SEQRES 1 L 214 ASP ILE VAL LEU THR GLN SER PRO SER SER ILE TYR ALA SEQRES 2 L 214 SER LEU GLY GLU ARG VAL THR LEU THR CYS LYS ALA SER SEQRES 3 L 214 GLN ASP ILE HIS ASN TYR LEU ASN TRP PHE GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS SER PRO LYS THR LEU ILE TYR ARG ALA ASN SEQRES 5 L 214 ARG LEU VAL ASP GLY VAL PRO SER ARG PHE SER GLY GLY SEQRES 6 L 214 GLY SER GLY GLN ASP TYR SER LEU THR ILE SER SER LEU SEQRES 7 L 214 GLU PHE GLU ASP ILE GLY ILE TYR TYR CYS LEU GLN TYR SEQRES 8 L 214 ASP GLU PHE PRO PRO THR PHE GLY GLY GLY THR ARG LEU SEQRES 9 L 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS HET EDO A1257 4 HET EDO A1258 4 HET EDO A1259 4 HET EDO H1219 4 HET EDO H1220 4 HET EDO H1221 4 HET EDO H1222 4 HET EDO H1223 4 HET EDO L1213 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 9(C2 H6 O2) FORMUL 13 HOH *464(H2 O) HELIX 1 1 GLY A 15 ALA A 22 1 8 HELIX 2 2 ASN A 64 LEU A 68 5 5 HELIX 3 3 PHE A 141 LEU A 144 5 4 HELIX 4 4 SER A 186 ASN A 190 5 5 HELIX 5 5 SER H 28 TYR H 32 5 5 HELIX 6 6 GLN H 62 LYS H 65 5 4 HELIX 7 7 THR H 87 SER H 91 5 5 HELIX 8 8 SER H 162 SER H 164 5 3 HELIX 9 9 PRO H 206 SER H 209 5 4 HELIX 10 10 GLU L 79 ILE L 83 5 5 HELIX 11 11 SER L 121 THR L 126 1 6 HELIX 12 12 LYS L 183 ARG L 188 1 6 SHEET 1 AA 2 LEU A 34 THR A 35 0 SHEET 2 AA 2 SER A 62 LEU A 63 -1 N LEU A 63 O LEU A 34 SHEET 1 AB 6 ALA A 53 TYR A 57 0 SHEET 2 AB 6 LYS A 45 ALA A 50 -1 O LEU A 46 N TYR A 57 SHEET 3 AB 6 VAL A 73 GLN A 81 -1 O ASP A 77 N ALA A 49 SHEET 4 AB 6 THR A 90 LYS A 100 -1 N LEU A 91 O ARG A 80 SHEET 5 AB 6 SER A 104 GLN A 113 -1 O LEU A 106 N TYR A 99 SHEET 6 AB 6 ALA A 125 GLY A 136 -1 N LYS A 126 O GLU A 112 SHEET 1 AC 9 ARG A 149 GLY A 158 0 SHEET 2 AC 9 ASP A 161 ASP A 171 -1 O ASP A 161 N GLY A 158 SHEET 3 AC 9 GLN A 176 GLU A 182 -1 O GLN A 176 N ASP A 171 SHEET 4 AC 9 ASP A 192 PRO A 200 -1 O LEU A 193 N GLY A 179 SHEET 5 AC 9 ALA A 206 TYR A 214 -1 O VAL A 207 N LYS A 199 SHEET 6 AC 9 ALA A 217 PHE A 227 -1 O ALA A 217 N TYR A 214 SHEET 7 AC 9 GLU A 233 THR A 242 -1 O GLU A 233 N PHE A 227 SHEET 8 AC 9 GLY A 245 GLN A 255 -1 O GLY A 245 N THR A 242 SHEET 9 AC 9 ARG A 149 GLY A 158 -1 O ARG A 153 N LYS A 254 SHEET 1 HA 4 LEU H 4 GLU H 6 0 SHEET 2 HA 4 VAL H 18 ALA H 24 -1 O LYS H 23 N GLN H 5 SHEET 3 HA 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 HA 4 ALA H 68 ASP H 73 -1 O THR H 69 N GLN H 82 SHEET 1 HB 4 GLU H 10 VAL H 12 0 SHEET 2 HB 4 THR H 113 VAL H 117 1 O THR H 114 N GLU H 10 SHEET 3 HB 4 ALA H 92 ARG H 98 -1 O ALA H 92 N LEU H 115 SHEET 4 HB 4 TYR H 108 TRP H 109 -1 O TYR H 108 N ARG H 98 SHEET 1 HC 6 GLU H 10 VAL H 12 0 SHEET 2 HC 6 THR H 113 VAL H 117 1 O THR H 114 N GLU H 10 SHEET 3 HC 6 ALA H 92 ARG H 98 -1 O ALA H 92 N LEU H 115 SHEET 4 HC 6 MET H 34 SER H 40 -1 O SER H 35 N VAL H 97 SHEET 5 HC 6 SER H 44 ILE H 51 -1 O SER H 44 N SER H 40 SHEET 6 HC 6 ILE H 58 TYR H 60 -1 O ASN H 59 N ILE H 50 SHEET 1 HD 2 TYR H 108 TRP H 109 0 SHEET 2 HD 2 ALA H 92 ARG H 98 -1 N ARG H 98 O TYR H 108 SHEET 1 HE 4 SER H 126 LEU H 130 0 SHEET 2 HE 4 SER H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 HE 4 TYR H 181 PRO H 190 -1 O TYR H 181 N TYR H 151 SHEET 4 HE 4 LEU H 175 LEU H 176 1 O LEU H 175 N THR H 182 SHEET 1 HF 4 SER H 126 LEU H 130 0 SHEET 2 HF 4 SER H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 HF 4 TYR H 181 PRO H 190 -1 O TYR H 181 N TYR H 151 SHEET 4 HF 4 VAL H 169 THR H 171 -1 O HIS H 170 N SER H 186 SHEET 1 HG 2 LEU H 175 LEU H 176 0 SHEET 2 HG 2 TYR H 181 PRO H 190 1 O THR H 182 N LEU H 175 SHEET 1 HH 3 THR H 157 TRP H 160 0 SHEET 2 HH 3 VAL H 199 HIS H 205 -1 O SER H 202 N THR H 159 SHEET 3 HH 3 THR H 210 LEU H 216 -1 O THR H 210 N HIS H 205 SHEET 1 LA 4 LEU L 4 SER L 7 0 SHEET 2 LA 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 LA 4 ASP L 70 ILE L 75 -1 O TYR L 71 N CYS L 23 SHEET 4 LA 4 PHE L 62 SER L 67 -1 O SER L 63 N THR L 74 SHEET 1 LB 4 SER L 10 ALA L 13 0 SHEET 2 LB 4 THR L 102 ILE L 106 1 O ARG L 103 N ILE L 11 SHEET 3 LB 4 GLY L 84 GLN L 90 -1 O GLY L 84 N LEU L 104 SHEET 4 LB 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 LC 6 SER L 10 ALA L 13 0 SHEET 2 LC 6 THR L 102 ILE L 106 1 O ARG L 103 N ILE L 11 SHEET 3 LC 6 GLY L 84 GLN L 90 -1 O GLY L 84 N LEU L 104 SHEET 4 LC 6 LEU L 33 GLN L 38 -1 O ASN L 34 N LEU L 89 SHEET 5 LC 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 LC 6 ARG L 53 LEU L 54 -1 O ARG L 53 N TYR L 49 SHEET 1 LD 2 THR L 97 PHE L 98 0 SHEET 2 LD 2 GLY L 84 GLN L 90 -1 O GLN L 90 N THR L 97 SHEET 1 LE 4 THR L 114 PHE L 118 0 SHEET 2 LE 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 LE 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 LE 4 VAL L 159 TRP L 163 -1 O LEU L 160 N THR L 178 SHEET 1 LF 4 SER L 153 ARG L 155 0 SHEET 2 LF 4 ASN L 145 ILE L 150 -1 O TRP L 148 N ARG L 155 SHEET 3 LF 4 SER L 191 THR L 197 -1 O THR L 193 N LYS L 149 SHEET 4 LF 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 146 CYS H 201 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.11 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.05 CISPEP 1 GLY A 30 LEU A 31 0 2.15 CISPEP 2 TYR A 57 GLY A 58 0 7.58 CISPEP 3 PHE H 152 PRO H 153 0 -0.79 CISPEP 4 TRP H 194 PRO H 195 0 11.90 CISPEP 5 SER L 7 PRO L 8 0 -14.92 CISPEP 6 PHE L 94 PRO L 95 0 2.42 CISPEP 7 TYR L 140 PRO L 141 0 7.73 SITE 1 AC1 5 HIS A 205 HOH A2064 HOH A2141 GLN H 82 SITE 2 AC1 5 ASN H 84 SITE 1 AC2 6 LYS H 63 PHE H 64 LYS H 67 HOH H2050 SITE 2 AC2 6 HOH H2060 HOH H2106 SITE 1 AC3 5 LYS A 143 ASP H 73 GLN H 74 HOH H2066 SITE 2 AC3 5 HOH H2094 SITE 1 AC4 6 ALA H 24 SER H 25 GLY H 26 TYR H 27 SITE 2 AC4 6 PHE H 29 SER H 77 SITE 1 AC5 7 ILE A 134 HIS A 138 VAL A 207 GLY A 225 SITE 2 AC5 7 HOH A2057 HOH A2106 HOH A2142 SITE 1 AC6 7 VAL H 93 GLN H 111 GLY H 112 THR H 114 SITE 2 AC6 7 HOH H2010 HOH H2110 HOH H2199 SITE 1 AC7 5 GLN H 3 SER H 209 HOH H2003 HOH H2184 SITE 2 AC7 5 HOH H2185 SITE 1 AC8 6 GLY H 42 HOH H2110 GLN L 38 LYS L 39 SITE 2 AC8 6 GLY L 41 LYS L 42 SITE 1 AC9 5 ASN A 178 LYS A 180 HOH A2084 SER H 196 SITE 2 AC9 5 HOH H2178 CRYST1 58.800 81.850 152.750 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006547 0.00000