HEADER VIRAL PROTEIN 04-NOV-12 2YQ2 TITLE STRUCTURE OF BVDV1 ENVELOPE GLYCOPROTEIN E2, PH8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BVDV1 E2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BVDV1 E2 ECTODOMAIN, RESIDUES 1-337; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOVINE VIRAL DIARRHEA VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11099; SOURCE 4 STRAIN: PE515; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS VIRAL PROTEIN, PESTIVIRUS, VIRUS FUSION EXPDTA X-RAY DIFFRACTION AUTHOR K.EL OMARI,O.IOURIN,K.HARLOS,J.M.GRIMES,D.I.STUART REVDAT 5 23-OCT-24 2YQ2 1 HETSYN REVDAT 4 29-JUL-20 2YQ2 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 03-APR-19 2YQ2 1 SOURCE LINK REVDAT 2 20-FEB-13 2YQ2 1 JRNL REVDAT 1 16-JAN-13 2YQ2 0 JRNL AUTH K.EL OMARI,O.IOURIN,K.HARLOS,J.M.GRIMES,D.I.STUART JRNL TITL STRUCTURE OF A PESTIVIRUS ENVELOPE GLYCOPROTEIN E2 CLARIFIES JRNL TITL 2 ITS ROLE IN CELL ENTRY. JRNL REF CELL REP. V. 3 30 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 23273918 JRNL DOI 10.1016/J.CELREP.2012.12.001 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 29867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1506 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.85 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2790 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2853 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2661 REMARK 3 BIN R VALUE (WORKING SET) : 0.2848 REMARK 3 BIN FREE R VALUE : 0.2968 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 129 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5248 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.41580 REMARK 3 B22 (A**2) : -5.18560 REMARK 3 B33 (A**2) : -2.23020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -14.57450 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.547 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.478 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.270 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.497 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.276 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.905 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5479 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7438 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2520 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 122 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 794 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5479 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 723 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5554 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.71 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.12 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 2 - 88 REMARK 3 ORIGIN FOR THE GROUP (A): -29.6466 38.0939 -20.4699 REMARK 3 T TENSOR REMARK 3 T11: -0.2491 T22: 0.1806 REMARK 3 T33: -0.0512 T12: 0.1820 REMARK 3 T13: 0.0182 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 6.0324 L22: 1.6349 REMARK 3 L33: 2.1483 L12: -0.9571 REMARK 3 L13: 1.7369 L23: -1.0926 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.1144 S13: 0.0002 REMARK 3 S21: 0.0904 S22: -0.0105 S23: -0.0535 REMARK 3 S31: -0.0389 S32: 0.1683 S33: -0.0334 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 89 - 203 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4115 35.2229 -40.1193 REMARK 3 T TENSOR REMARK 3 T11: -0.0602 T22: -0.0569 REMARK 3 T33: -0.0164 T12: 0.1713 REMARK 3 T13: 0.0279 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 5.8682 L22: 2.7797 REMARK 3 L33: 2.0746 L12: -2.0991 REMARK 3 L13: -2.9064 L23: 0.1783 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.0871 S13: -0.0131 REMARK 3 S21: -0.3915 S22: 0.0052 S23: -0.1886 REMARK 3 S31: -0.1568 S32: -0.4424 S33: -0.0191 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 204 - 287 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8775 25.0058 -52.2045 REMARK 3 T TENSOR REMARK 3 T11: -0.0852 T22: -0.0927 REMARK 3 T33: 0.0431 T12: 0.1359 REMARK 3 T13: 0.1373 T23: 0.1051 REMARK 3 L TENSOR REMARK 3 L11: 3.7543 L22: 4.3695 REMARK 3 L33: 1.7146 L12: -1.0048 REMARK 3 L13: -1.3148 L23: -0.1540 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: -0.0363 S13: 0.0943 REMARK 3 S21: 0.0236 S22: -0.0024 S23: 0.0805 REMARK 3 S31: 0.0187 S32: 0.0896 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 288 - 293 REMARK 3 ORIGIN FOR THE GROUP (A): 66.9011 4.4983 -56.0511 REMARK 3 T TENSOR REMARK 3 T11: 0.0104 T22: 0.0247 REMARK 3 T33: 0.0070 T12: -0.0110 REMARK 3 T13: 0.0074 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.0329 L22: 0.0603 REMARK 3 L33: 0.0268 L12: 0.0155 REMARK 3 L13: 0.0177 L23: -0.0376 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.0026 S13: 0.0010 REMARK 3 S21: 0.0026 S22: -0.0031 S23: 0.0000 REMARK 3 S31: -0.0014 S32: -0.0020 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 294 - 333 REMARK 3 ORIGIN FOR THE GROUP (A): 73.3298 18.0436 -74.1843 REMARK 3 T TENSOR REMARK 3 T11: -0.0341 T22: 0.0132 REMARK 3 T33: 0.0375 T12: 0.1205 REMARK 3 T13: 0.2203 T23: 0.1214 REMARK 3 L TENSOR REMARK 3 L11: 2.1780 L22: 0.0652 REMARK 3 L33: 1.5935 L12: -1.6810 REMARK 3 L13: -2.0734 L23: 0.0709 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.0541 S13: -0.0169 REMARK 3 S21: 0.0237 S22: 0.0071 S23: -0.0128 REMARK 3 S31: 0.0092 S32: -0.0181 S33: -0.0147 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESID 2 - 88 REMARK 3 ORIGIN FOR THE GROUP (A): 131.6027 54.3747 -151.8757 REMARK 3 T TENSOR REMARK 3 T11: -0.0838 T22: 0.1824 REMARK 3 T33: -0.1025 T12: 0.1144 REMARK 3 T13: 0.0727 T23: -0.0589 REMARK 3 L TENSOR REMARK 3 L11: 3.2648 L22: 0.6976 REMARK 3 L33: 4.0500 L12: 0.8826 REMARK 3 L13: 0.3776 L23: 2.5480 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0626 S13: -0.0393 REMARK 3 S21: -0.0461 S22: -0.0119 S23: 0.0259 REMARK 3 S31: 0.0972 S32: 0.0483 S33: 0.0117 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESID 89 - 203 REMARK 3 ORIGIN FOR THE GROUP (A): 106.5573 46.1977 -124.1110 REMARK 3 T TENSOR REMARK 3 T11: -0.1315 T22: -0.0243 REMARK 3 T33: 0.0047 T12: -0.0596 REMARK 3 T13: 0.0020 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 3.6845 L22: 3.0103 REMARK 3 L33: 1.7990 L12: 2.5757 REMARK 3 L13: -1.9590 L23: -1.2364 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: 0.3007 S13: -0.1019 REMARK 3 S21: 0.1048 S22: 0.0191 S23: 0.1182 REMARK 3 S31: 0.0713 S32: 0.2597 S33: -0.0315 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESID 204 - 287 REMARK 3 ORIGIN FOR THE GROUP (A): 84.1940 25.5331 -93.3856 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: -0.2125 REMARK 3 T33: 0.1758 T12: 0.0797 REMARK 3 T13: 0.2447 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.7735 L22: 0.6693 REMARK 3 L33: 3.0417 L12: 2.6740 REMARK 3 L13: -2.4914 L23: -1.3488 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: -0.1699 S13: -0.0192 REMARK 3 S21: -0.0246 S22: 0.0643 S23: 0.0562 REMARK 3 S31: -0.0998 S32: -0.0547 S33: -0.0571 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND RESID 288 - 293 REMARK 3 ORIGIN FOR THE GROUP (A): 87.5377 14.1384 -66.1603 REMARK 3 T TENSOR REMARK 3 T11: 0.0008 T22: 0.0131 REMARK 3 T33: 0.0472 T12: 0.0070 REMARK 3 T13: 0.0182 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.0644 L22: 0.0662 REMARK 3 L33: 0.1033 L12: 0.0004 REMARK 3 L13: 0.0445 L23: -0.0495 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.0004 S13: -0.0017 REMARK 3 S21: -0.0016 S22: 0.0011 S23: -0.0014 REMARK 3 S31: -0.0008 S32: -0.0030 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND RESID 294 - 331 REMARK 3 ORIGIN FOR THE GROUP (A): 63.4897 19.2707 -63.3179 REMARK 3 T TENSOR REMARK 3 T11: -0.1055 T22: 0.0855 REMARK 3 T33: 0.0308 T12: 0.1911 REMARK 3 T13: 0.1540 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 0.9511 L22: 0.3294 REMARK 3 L33: 1.7225 L12: -1.7124 REMARK 3 L13: -1.4484 L23: -0.3252 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: -0.0361 S13: 0.0016 REMARK 3 S21: -0.0330 S22: 0.0112 S23: -0.0427 REMARK 3 S31: -0.0145 S32: 0.0586 S33: -0.0180 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YQ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1290054714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29885 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 52.5% METHYL-2,4-PENTANEDIOL (MPD) AND REMARK 280 0.1 M TRIS PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.09000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.79650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.09000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.79650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ASP A 334 REMARK 465 GLY A 335 REMARK 465 THR A 336 REMARK 465 LYS A 337 REMARK 465 GLU B 1 REMARK 465 VAL B 332 REMARK 465 THR B 333 REMARK 465 ASP B 334 REMARK 465 GLY B 335 REMARK 465 THR B 336 REMARK 465 LYS B 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 37 127.23 -36.84 REMARK 500 GLU A 100 -50.72 -130.80 REMARK 500 CYS A 130 59.24 38.99 REMARK 500 ARG A 145 -125.26 48.19 REMARK 500 LEU A 148 -7.36 78.06 REMARK 500 ASN A 186 -127.63 56.64 REMARK 500 GLU A 245 -117.85 67.74 REMARK 500 LEU A 273 108.31 -59.21 REMARK 500 GLU B 36 6.75 86.21 REMARK 500 GLU B 100 -52.69 -131.33 REMARK 500 CYS B 130 59.49 39.23 REMARK 500 ASN B 186 -127.04 57.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN B 117 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YQ3 RELATED DB: PDB REMARK 900 STRUCTURE OF BVDV1 ENVELOPE GLYCOPROTEIN E2, PH5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTATION: Y9S, G94E, N298Q DBREF 2YQ2 A 1 337 PDB 2YQ2 2YQ2 1 337 DBREF 2YQ2 B 1 337 PDB 2YQ2 2YQ2 1 337 SEQRES 1 A 337 GLU THR GLY CYS LYS PRO GLU TYR TYR TYR ALA ILE ALA SEQRES 2 A 337 LYS ASN ASP ARG ILE GLY PRO LEU GLY ALA GLU GLY LEU SEQRES 3 A 337 THR THR VAL TRP LYS ASP TYR SER PRO GLU MET THR LEU SEQRES 4 A 337 GLU ASP THR MET VAL ILE ALA SER CYS ARG ASP GLY LYS SEQRES 5 A 337 PHE MET TYR LEU SER ARG CYS THR ARG GLU THR ARG TYR SEQRES 6 A 337 LEU ALA ILE LEU HIS SER ARG ALA LEU PRO THR SER VAL SEQRES 7 A 337 VAL PHE LYS LYS LEU PHE GLU GLY GLN LYS GLN GLY ASP SEQRES 8 A 337 THR VAL GLU MET ASP ASP ASP PHE GLU PHE GLY LEU CYS SEQRES 9 A 337 PRO CYS ASP ALA LYS PRO ILE VAL ARG GLY LYS TYR ASN SEQRES 10 A 337 THR THR LEU LEU ASN GLY PRO ALA PHE GLN MET VAL CYS SEQRES 11 A 337 PRO ILE GLY TRP THR GLY THR VAL SER CYS MET LEU ALA SEQRES 12 A 337 ASN ARG ASP THR LEU ASP THR ALA VAL VAL ARG THR TYR SEQRES 13 A 337 ARG ARG SER ARG PRO PHE PRO TYR ARG GLN GLY CYS ILE SEQRES 14 A 337 THR GLN LYS VAL LEU GLY GLU ASP LEU TYR ASP CYS ILE SEQRES 15 A 337 LEU GLY GLY ASN TRP THR CYS VAL THR GLY ASP GLN LEU SEQRES 16 A 337 GLN TYR SER GLY GLY SER ILE GLU SER CYS LYS TRP CYS SEQRES 17 A 337 GLY PHE LYS PHE GLN ARG SER GLU GLY LEU PRO HIS TYR SEQRES 18 A 337 PRO ILE GLY LYS CYS ARG LEU LYS ASN GLU THR GLY TYR SEQRES 19 A 337 ARG LEU VAL ASP ASN THR SER CYS ASN ARG GLU GLY VAL SEQRES 20 A 337 ALA ILE VAL PRO GLN GLY THR VAL LYS CYS LYS ILE GLY SEQRES 21 A 337 ASP THR THR VAL GLN VAL ILE ALA LEU ASP THR LYS LEU SEQRES 22 A 337 GLY PRO MET PRO CYS LYS PRO TYR GLU ILE ILE SER SER SEQRES 23 A 337 GLU GLY PRO VAL GLU LYS THR ALA CYS THR PHE ASN TYR SEQRES 24 A 337 THR LYS THR LEU LYS ASN LYS TYR PHE GLU PRO ARG ASP SEQRES 25 A 337 SER TYR PHE GLN GLN TYR MET LEU LYS GLY GLU TYR GLN SEQRES 26 A 337 TYR TRP PHE ASP LEU GLU VAL THR ASP GLY THR LYS SEQRES 1 B 337 GLU THR GLY CYS LYS PRO GLU TYR TYR TYR ALA ILE ALA SEQRES 2 B 337 LYS ASN ASP ARG ILE GLY PRO LEU GLY ALA GLU GLY LEU SEQRES 3 B 337 THR THR VAL TRP LYS ASP TYR SER PRO GLU MET THR LEU SEQRES 4 B 337 GLU ASP THR MET VAL ILE ALA SER CYS ARG ASP GLY LYS SEQRES 5 B 337 PHE MET TYR LEU SER ARG CYS THR ARG GLU THR ARG TYR SEQRES 6 B 337 LEU ALA ILE LEU HIS SER ARG ALA LEU PRO THR SER VAL SEQRES 7 B 337 VAL PHE LYS LYS LEU PHE GLU GLY GLN LYS GLN GLY ASP SEQRES 8 B 337 THR VAL GLU MET ASP ASP ASP PHE GLU PHE GLY LEU CYS SEQRES 9 B 337 PRO CYS ASP ALA LYS PRO ILE VAL ARG GLY LYS TYR ASN SEQRES 10 B 337 THR THR LEU LEU ASN GLY PRO ALA PHE GLN MET VAL CYS SEQRES 11 B 337 PRO ILE GLY TRP THR GLY THR VAL SER CYS MET LEU ALA SEQRES 12 B 337 ASN ARG ASP THR LEU ASP THR ALA VAL VAL ARG THR TYR SEQRES 13 B 337 ARG ARG SER ARG PRO PHE PRO TYR ARG GLN GLY CYS ILE SEQRES 14 B 337 THR GLN LYS VAL LEU GLY GLU ASP LEU TYR ASP CYS ILE SEQRES 15 B 337 LEU GLY GLY ASN TRP THR CYS VAL THR GLY ASP GLN LEU SEQRES 16 B 337 GLN TYR SER GLY GLY SER ILE GLU SER CYS LYS TRP CYS SEQRES 17 B 337 GLY PHE LYS PHE GLN ARG SER GLU GLY LEU PRO HIS TYR SEQRES 18 B 337 PRO ILE GLY LYS CYS ARG LEU LYS ASN GLU THR GLY TYR SEQRES 19 B 337 ARG LEU VAL ASP ASN THR SER CYS ASN ARG GLU GLY VAL SEQRES 20 B 337 ALA ILE VAL PRO GLN GLY THR VAL LYS CYS LYS ILE GLY SEQRES 21 B 337 ASP THR THR VAL GLN VAL ILE ALA LEU ASP THR LYS LEU SEQRES 22 B 337 GLY PRO MET PRO CYS LYS PRO TYR GLU ILE ILE SER SER SEQRES 23 B 337 GLU GLY PRO VAL GLU LYS THR ALA CYS THR PHE ASN TYR SEQRES 24 B 337 THR LYS THR LEU LYS ASN LYS TYR PHE GLU PRO ARG ASP SEQRES 25 B 337 SER TYR PHE GLN GLN TYR MET LEU LYS GLY GLU TYR GLN SEQRES 26 B 337 TYR TRP PHE ASP LEU GLU VAL THR ASP GLY THR LYS MODRES 2YQ2 ASN A 117 ASN GLYCOSYLATION SITE MODRES 2YQ2 ASN A 186 ASN GLYCOSYLATION SITE MODRES 2YQ2 ASN A 230 ASN GLYCOSYLATION SITE MODRES 2YQ2 ASN B 117 ASN GLYCOSYLATION SITE MODRES 2YQ2 ASN B 186 ASN GLYCOSYLATION SITE MODRES 2YQ2 ASN B 230 ASN GLYCOSYLATION SITE HET NAG A1000 14 HET NAG A1001 14 HET NAG A1002 14 HET NAG B1000 14 HET NAG B1001 14 HET NAG B1002 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 9 HOH *48(H2 O) HELIX 1 1 LEU A 74 VAL A 78 5 5 HELIX 2 2 PRO A 105 ALA A 108 5 4 HELIX 3 3 GLY A 185 CYS A 189 5 5 HELIX 4 4 LEU B 74 VAL B 78 5 5 HELIX 5 5 PRO B 105 ALA B 108 5 4 HELIX 6 6 GLY B 185 CYS B 189 5 5 SHEET 1 AA 4 LYS A 31 ASP A 32 0 SHEET 2 AA 4 TYR A 8 ALA A 13 -1 O TYR A 10 N LYS A 31 SHEET 3 AA 4 ARG A 64 HIS A 70 -1 O TYR A 65 N ALA A 13 SHEET 4 AA 4 VAL A 79 PHE A 84 -1 O VAL A 79 N ILE A 68 SHEET 1 AB 2 ILE A 18 GLY A 19 0 SHEET 2 AB 2 GLY A 22 ALA A 23 -1 O GLY A 22 N GLY A 19 SHEET 1 AC 3 THR A 38 GLU A 40 0 SHEET 2 AC 3 VAL A 44 CYS A 48 -1 O ALA A 46 N LEU A 39 SHEET 3 AC 3 PHE A 53 SER A 57 -1 O MET A 54 N SER A 47 SHEET 1 AD 4 ASP A 91 GLU A 94 0 SHEET 2 AD 4 THR A 150 ARG A 158 1 O VAL A 153 N ASP A 91 SHEET 3 AD 4 GLY A 136 ALA A 143 -1 O GLY A 136 N ARG A 158 SHEET 4 AD 4 LYS A 109 GLY A 114 -1 O LYS A 109 N MET A 141 SHEET 1 AE 3 PHE A 101 LEU A 103 0 SHEET 2 AE 3 ALA A 125 MET A 128 -1 O PHE A 126 N GLY A 102 SHEET 3 AE 3 THR A 119 ASN A 122 -1 O LEU A 120 N GLN A 127 SHEET 1 AF 3 GLN A 171 LEU A 174 0 SHEET 2 AF 3 ASP A 177 LEU A 183 -1 O ASP A 177 N LEU A 174 SHEET 3 AF 3 VAL A 190 GLN A 194 -1 O VAL A 190 N ILE A 182 SHEET 1 AG 4 PHE A 210 PHE A 212 0 SHEET 2 AG 4 ILE A 202 TRP A 207 -1 O CYS A 205 N PHE A 212 SHEET 3 AG 4 LYS A 225 LEU A 228 -1 O LYS A 225 N LYS A 206 SHEET 4 AG 4 TYR A 234 LEU A 236 -1 O ARG A 235 N CYS A 226 SHEET 1 AH 5 ASN A 243 ARG A 244 0 SHEET 2 AH 5 VAL A 247 ILE A 249 -1 O VAL A 247 N ARG A 244 SHEET 3 AH 5 THR A 262 ALA A 268 -1 O ILE A 267 N ALA A 248 SHEET 4 AH 5 VAL A 255 ILE A 259 -1 O VAL A 255 N VAL A 266 SHEET 5 AH 5 LYS A 279 PRO A 280 -1 O LYS A 279 N LYS A 258 SHEET 1 AI 2 GLY A 274 PRO A 275 0 SHEET 2 AI 2 LYS B 306 TYR B 307 1 N TYR B 307 O GLY A 274 SHEET 1 AJ 4 ILE A 284 SER A 285 0 SHEET 2 AJ 4 CYS B 295 LYS B 301 -1 O TYR B 299 N ILE A 284 SHEET 3 AJ 4 TYR B 324 LEU B 330 -1 O GLN B 325 N THR B 300 SHEET 4 AJ 4 MET B 319 LYS B 321 -1 O MET B 319 N TYR B 326 SHEET 1 AK 4 MET A 319 LYS A 321 0 SHEET 2 AK 4 TYR A 324 VAL A 332 -1 O TYR A 324 N LYS A 321 SHEET 3 AK 4 THR A 293 LYS A 301 -1 O ALA A 294 N GLU A 331 SHEET 4 AK 4 ILE B 284 SER B 285 -1 O ILE B 284 N TYR A 299 SHEET 1 AL 2 LYS A 306 TYR A 307 0 SHEET 2 AL 2 GLY B 274 PRO B 275 1 O GLY B 274 N TYR A 307 SHEET 1 BA 4 LYS B 31 ASP B 32 0 SHEET 2 BA 4 TYR B 8 ALA B 13 -1 O TYR B 10 N LYS B 31 SHEET 3 BA 4 ARG B 64 HIS B 70 -1 O TYR B 65 N ALA B 13 SHEET 4 BA 4 VAL B 79 PHE B 84 -1 O VAL B 79 N ILE B 68 SHEET 1 BB 2 ILE B 18 GLY B 19 0 SHEET 2 BB 2 GLY B 22 ALA B 23 -1 O GLY B 22 N GLY B 19 SHEET 1 BC 3 THR B 38 GLU B 40 0 SHEET 2 BC 3 VAL B 44 ARG B 49 -1 O ALA B 46 N LEU B 39 SHEET 3 BC 3 LYS B 52 SER B 57 -1 O LYS B 52 N ARG B 49 SHEET 1 BD 4 ASP B 91 GLU B 94 0 SHEET 2 BD 4 ALA B 151 ARG B 158 1 O VAL B 153 N ASP B 91 SHEET 3 BD 4 GLY B 136 LEU B 142 -1 O GLY B 136 N ARG B 158 SHEET 4 BD 4 LYS B 109 GLY B 114 -1 O LYS B 109 N MET B 141 SHEET 1 BE 3 PHE B 101 LEU B 103 0 SHEET 2 BE 3 ALA B 125 MET B 128 -1 O PHE B 126 N GLY B 102 SHEET 3 BE 3 THR B 119 ASN B 122 -1 O LEU B 120 N GLN B 127 SHEET 1 BF 3 GLN B 171 LEU B 174 0 SHEET 2 BF 3 ASP B 177 LEU B 183 -1 O ASP B 177 N LEU B 174 SHEET 3 BF 3 VAL B 190 GLN B 194 -1 O VAL B 190 N ILE B 182 SHEET 1 BG 4 PHE B 210 PHE B 212 0 SHEET 2 BG 4 ILE B 202 TRP B 207 -1 O CYS B 205 N PHE B 212 SHEET 3 BG 4 LYS B 225 LEU B 228 -1 O LYS B 225 N LYS B 206 SHEET 4 BG 4 TYR B 234 LEU B 236 -1 O ARG B 235 N CYS B 226 SHEET 1 BH 5 ASN B 243 ARG B 244 0 SHEET 2 BH 5 VAL B 247 ILE B 249 -1 O VAL B 247 N ARG B 244 SHEET 3 BH 5 THR B 262 ALA B 268 -1 O ILE B 267 N ALA B 248 SHEET 4 BH 5 VAL B 255 ILE B 259 -1 O VAL B 255 N VAL B 266 SHEET 5 BH 5 LYS B 279 PRO B 280 -1 O LYS B 279 N LYS B 258 SSBOND 1 CYS A 4 CYS A 48 1555 1555 2.02 SSBOND 2 CYS A 59 CYS A 106 1555 1555 2.02 SSBOND 3 CYS A 104 CYS A 140 1555 1555 2.03 SSBOND 4 CYS A 130 CYS A 168 1555 1555 2.06 SSBOND 5 CYS A 181 CYS A 189 1555 1555 2.04 SSBOND 6 CYS A 205 CYS A 226 1555 1555 2.03 SSBOND 7 CYS A 208 CYS A 242 1555 1555 2.04 SSBOND 8 CYS A 257 CYS A 278 1555 1555 2.03 SSBOND 9 CYS A 295 CYS B 295 1555 1555 2.02 SSBOND 10 CYS B 4 CYS B 48 1555 1555 2.03 SSBOND 11 CYS B 59 CYS B 106 1555 1555 2.05 SSBOND 12 CYS B 104 CYS B 140 1555 1555 2.04 SSBOND 13 CYS B 130 CYS B 168 1555 1555 2.05 SSBOND 14 CYS B 181 CYS B 189 1555 1555 2.03 SSBOND 15 CYS B 205 CYS B 226 1555 1555 2.03 SSBOND 16 CYS B 208 CYS B 242 1555 1555 2.03 SSBOND 17 CYS B 257 CYS B 278 1555 1555 2.03 LINK ND2 ASN A 117 C1 NAG A1001 1555 1555 1.44 LINK ND2 ASN A 186 C1 NAG A1000 1555 1555 1.44 LINK ND2 ASN A 230 C1 NAG A1002 1555 1555 1.43 LINK ND2 ASN B 117 C1 NAG B1002 1555 1555 1.42 LINK ND2 ASN B 186 C1 NAG B1001 1555 1555 1.43 LINK ND2 ASN B 230 C1 NAG B1000 1555 1555 1.43 CISPEP 1 TYR A 221 PRO A 222 0 5.72 CISPEP 2 GLU A 309 PRO A 310 0 2.21 CISPEP 3 TYR B 221 PRO B 222 0 4.48 CISPEP 4 GLU B 309 PRO B 310 0 1.73 CRYST1 132.180 47.593 159.290 90.00 108.15 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007565 0.000000 0.002480 0.00000 SCALE2 0.000000 0.021011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006607 0.00000