data_2YQD # _entry.id 2YQD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YQD pdb_00002yqd 10.2210/pdb2yqd/pdb RCSB RCSB027001 ? ? WWPDB D_1000027001 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008002603.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2YQD _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-03-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sano, R.' 1 'Hayashi, F.' 2 'Yoshida, M.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the fifth bromodomain from mouse polybromo-1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sano, R.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yoshida, M.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description POLYBROMO-1 _entity.formula_weight 14093.302 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation E695D _entity.pdbx_fragment bromodomain _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDID SMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRD ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDID SMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt008002603.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LYS n 1 9 LYS n 1 10 SER n 1 11 LYS n 1 12 TYR n 1 13 MET n 1 14 THR n 1 15 PRO n 1 16 MET n 1 17 GLN n 1 18 GLN n 1 19 LYS n 1 20 LEU n 1 21 ASN n 1 22 GLU n 1 23 VAL n 1 24 TYR n 1 25 GLU n 1 26 ALA n 1 27 VAL n 1 28 LYS n 1 29 ASN n 1 30 TYR n 1 31 THR n 1 32 ASP n 1 33 LYS n 1 34 ARG n 1 35 GLY n 1 36 ARG n 1 37 ARG n 1 38 LEU n 1 39 SER n 1 40 ALA n 1 41 ILE n 1 42 PHE n 1 43 LEU n 1 44 ARG n 1 45 LEU n 1 46 PRO n 1 47 SER n 1 48 ARG n 1 49 SER n 1 50 GLU n 1 51 LEU n 1 52 PRO n 1 53 ASP n 1 54 TYR n 1 55 TYR n 1 56 LEU n 1 57 THR n 1 58 ILE n 1 59 LYS n 1 60 LYS n 1 61 PRO n 1 62 MET n 1 63 ASP n 1 64 MET n 1 65 GLU n 1 66 LYS n 1 67 ILE n 1 68 ARG n 1 69 SER n 1 70 HIS n 1 71 MET n 1 72 MET n 1 73 ALA n 1 74 ASN n 1 75 LYS n 1 76 TYR n 1 77 GLN n 1 78 ASP n 1 79 ILE n 1 80 ASP n 1 81 SER n 1 82 MET n 1 83 VAL n 1 84 GLU n 1 85 ASP n 1 86 PHE n 1 87 VAL n 1 88 MET n 1 89 MET n 1 90 PHE n 1 91 ASN n 1 92 ASN n 1 93 ALA n 1 94 CYS n 1 95 THR n 1 96 TYR n 1 97 ASN n 1 98 GLU n 1 99 PRO n 1 100 GLU n 1 101 SER n 1 102 LEU n 1 103 ILE n 1 104 TYR n 1 105 LYS n 1 106 ASP n 1 107 ALA n 1 108 LEU n 1 109 VAL n 1 110 LEU n 1 111 HIS n 1 112 LYS n 1 113 VAL n 1 114 LEU n 1 115 LEU n 1 116 GLU n 1 117 THR n 1 118 ARG n 1 119 ARG n 1 120 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene Pb1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060821-09 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8BSQ9_MOUSE _struct_ref.pdbx_db_accession Q8BSQ9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPEYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFV MMFNNACTYNEPESLIYKDALVLHKVLLETRRD ; _struct_ref.pdbx_align_begin 650 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YQD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 120 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8BSQ9 _struct_ref_seq.db_align_beg 650 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 762 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 120 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YQD GLY A 1 ? UNP Q8BSQ9 ? ? 'expression tag' 1 1 1 2YQD SER A 2 ? UNP Q8BSQ9 ? ? 'expression tag' 2 2 1 2YQD SER A 3 ? UNP Q8BSQ9 ? ? 'expression tag' 3 3 1 2YQD GLY A 4 ? UNP Q8BSQ9 ? ? 'expression tag' 4 4 1 2YQD SER A 5 ? UNP Q8BSQ9 ? ? 'expression tag' 5 5 1 2YQD SER A 6 ? UNP Q8BSQ9 ? ? 'expression tag' 6 6 1 2YQD GLY A 7 ? UNP Q8BSQ9 ? ? 'expression tag' 7 7 1 2YQD ASP A 53 ? UNP Q8BSQ9 GLU 695 'engineered mutation' 53 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.92mM 13C, 15N-labeled protein; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.entry_id 2YQD _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.entry_id 2YQD _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' _pdbx_nmr_representative.entry_id 2YQD # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20060702 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9820 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.method 'SOLUTION NMR' _exptl.entry_id 2YQD _exptl.crystals_number ? # _struct.entry_id 2YQD _struct.title 'Solution structure of the fifth bromodomain from mouse polybromo-1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YQD _struct_keywords.text ;bromodomain, four helices, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, GENE REGULATION ; _struct_keywords.pdbx_keywords 'GENE REGULATION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 16 ? TYR A 30 ? MET A 16 TYR A 30 1 ? 15 HELX_P HELX_P2 2 SER A 39 ? LEU A 43 ? SER A 39 LEU A 43 5 ? 5 HELX_P HELX_P3 3 LEU A 51 ? ILE A 58 ? LEU A 51 ILE A 58 1 ? 8 HELX_P HELX_P4 4 ASP A 63 ? ALA A 73 ? ASP A 63 ALA A 73 1 ? 11 HELX_P HELX_P5 5 ASP A 78 ? ASN A 97 ? ASP A 78 ASN A 97 1 ? 20 HELX_P HELX_P6 6 SER A 101 ? ARG A 118 ? SER A 101 ARG A 118 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2YQD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 MET 16 16 16 MET MET A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 MET 62 62 62 MET MET A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 MET 64 64 64 MET MET A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 MET 71 71 71 MET MET A . n A 1 72 MET 72 72 72 MET MET A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 MET 88 88 88 MET MET A . n A 1 89 MET 89 89 89 MET MET A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 HIS 111 111 111 HIS HIS A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 ASP 120 120 120 ASP ASP A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 11 ? ? -69.08 97.93 2 1 LEU A 20 ? ? -35.19 -34.27 3 1 TYR A 30 ? ? -37.87 133.70 4 1 ARG A 34 ? ? -105.13 -67.50 5 1 GLU A 50 ? ? -75.56 -74.14 6 1 LYS A 60 ? ? -117.82 72.35 7 1 ALA A 73 ? ? -86.23 33.67 8 1 ASN A 74 ? ? 36.50 49.27 9 1 TYR A 76 ? ? -54.71 173.05 10 1 PRO A 99 ? ? -69.69 2.51 11 1 TYR A 104 ? ? -62.87 -70.11 12 1 ARG A 118 ? ? -34.53 129.20 13 2 MET A 13 ? ? -34.52 133.03 14 2 ASN A 74 ? ? 34.65 47.50 15 2 PRO A 99 ? ? -69.72 2.16 16 2 SER A 101 ? ? -50.77 173.77 17 3 LYS A 11 ? ? -122.08 -57.58 18 3 MET A 13 ? ? -39.25 142.73 19 3 TYR A 30 ? ? -37.74 138.73 20 3 ARG A 34 ? ? -107.04 -70.47 21 3 LEU A 43 ? ? -92.17 -71.60 22 3 GLU A 50 ? ? -60.11 -75.01 23 3 ASN A 74 ? ? 38.17 53.46 24 3 ASP A 80 ? ? -36.26 -37.53 25 3 PRO A 99 ? ? -69.84 2.64 26 3 SER A 101 ? ? -45.58 168.73 27 4 SER A 2 ? ? 38.72 42.48 28 4 TYR A 30 ? ? -34.47 132.34 29 4 LEU A 43 ? ? -85.39 -73.42 30 4 SER A 47 ? ? -66.03 -174.94 31 4 LYS A 60 ? ? -119.26 75.64 32 4 TYR A 76 ? ? -58.45 176.74 33 4 GLN A 77 ? ? -110.01 -71.59 34 4 TYR A 104 ? ? -52.85 -70.98 35 4 ARG A 118 ? ? -38.46 122.82 36 5 SER A 10 ? ? 34.30 44.53 37 5 LYS A 11 ? ? -36.52 154.73 38 5 TYR A 12 ? ? -125.68 -56.15 39 5 TYR A 30 ? ? -37.02 135.68 40 5 ARG A 34 ? ? -104.94 -67.74 41 5 GLU A 50 ? ? -68.31 -73.94 42 5 LEU A 51 ? ? -112.04 75.14 43 5 ILE A 58 ? ? -50.55 108.56 44 5 ASN A 74 ? ? 39.48 32.67 45 5 GLN A 77 ? ? -130.43 -31.71 46 5 THR A 117 ? ? -37.85 -32.28 47 6 SER A 2 ? ? -64.24 90.34 48 6 SER A 3 ? ? -64.99 82.76 49 6 TYR A 12 ? ? -173.11 147.05 50 6 TYR A 30 ? ? -34.80 136.56 51 6 ARG A 34 ? ? -102.86 -62.44 52 6 LYS A 60 ? ? -114.98 71.43 53 6 ILE A 67 ? ? -93.20 -65.74 54 6 GLN A 77 ? ? -130.07 -31.82 55 6 TYR A 96 ? ? -96.66 -60.52 56 6 SER A 101 ? ? -52.88 170.32 57 6 ARG A 118 ? ? -35.94 117.54 58 7 SER A 10 ? ? -119.84 53.75 59 7 TYR A 30 ? ? -36.17 115.19 60 7 ASN A 74 ? ? 34.87 45.72 61 7 GLN A 77 ? ? -131.83 -36.22 62 8 TYR A 30 ? ? -36.16 113.52 63 8 ILE A 67 ? ? -92.03 -62.66 64 8 TYR A 76 ? ? -58.76 171.26 65 8 CYS A 94 ? ? -86.71 36.92 66 8 THR A 95 ? ? -95.90 -62.69 67 9 TYR A 30 ? ? -35.85 136.11 68 9 ASP A 32 ? ? -68.35 -175.04 69 9 GLU A 50 ? ? -73.18 -72.45 70 9 ILE A 67 ? ? -51.87 -70.20 71 9 ASN A 74 ? ? 37.07 38.51 72 9 TYR A 76 ? ? -64.04 -178.85 73 10 TYR A 30 ? ? -35.90 133.31 74 10 TYR A 76 ? ? -68.88 -175.25 75 10 PRO A 99 ? ? -69.73 2.57 76 10 TYR A 104 ? ? -63.52 -74.04 77 10 ARG A 118 ? ? -41.00 99.52 78 11 LYS A 8 ? ? -168.61 106.06 79 11 LEU A 20 ? ? -47.16 -70.35 80 11 ASP A 32 ? ? -63.04 -179.05 81 11 ARG A 37 ? ? -63.21 99.96 82 11 SER A 47 ? ? -68.79 -175.07 83 11 LEU A 51 ? ? -163.43 108.61 84 11 THR A 57 ? ? -54.49 -73.36 85 11 VAL A 87 ? ? -39.37 -70.80 86 11 GLU A 100 ? ? -106.54 43.97 87 12 MET A 13 ? ? -42.52 165.64 88 12 TYR A 30 ? ? -39.43 136.30 89 12 ASN A 91 ? ? -38.61 -35.01 90 12 PRO A 99 ? ? -69.74 0.15 91 13 LYS A 8 ? ? -66.81 89.43 92 13 SER A 10 ? ? -106.40 -70.54 93 13 MET A 13 ? ? -53.09 170.63 94 13 ARG A 34 ? ? -105.25 -66.21 95 13 LEU A 43 ? ? -80.92 -73.41 96 13 PRO A 52 ? ? -69.74 0.98 97 13 PRO A 61 ? ? -69.69 84.96 98 13 PRO A 99 ? ? -69.74 0.11 99 13 TYR A 104 ? ? -63.79 -71.84 100 14 LYS A 8 ? ? -131.45 -47.92 101 14 LYS A 9 ? ? -47.95 156.27 102 14 TYR A 30 ? ? -34.83 139.52 103 14 ASP A 32 ? ? -68.85 -174.93 104 14 LEU A 43 ? ? -83.65 -75.07 105 14 ARG A 48 ? ? -38.82 -34.65 106 14 LYS A 60 ? ? -117.64 77.44 107 14 GLN A 77 ? ? -132.48 -34.73 108 14 ASP A 85 ? ? -93.22 -69.08 109 14 PRO A 99 ? ? -69.81 1.28 110 14 TYR A 104 ? ? -72.99 -73.26 111 15 ARG A 34 ? ? -104.36 -69.05 112 15 LEU A 43 ? ? -34.64 -39.38 113 15 LYS A 60 ? ? -107.95 70.84 114 15 PRO A 61 ? ? -69.74 93.04 115 15 PHE A 86 ? ? -38.64 -30.02 116 15 CYS A 94 ? ? -49.07 -19.38 117 15 TYR A 104 ? ? -41.86 -70.73 118 16 LYS A 8 ? ? -40.88 98.45 119 16 LYS A 9 ? ? -58.05 179.51 120 16 SER A 10 ? ? 74.85 54.82 121 16 TYR A 12 ? ? -37.17 93.45 122 16 SER A 47 ? ? -39.93 156.00 123 16 ASN A 74 ? ? 32.66 53.41 124 16 TYR A 76 ? ? -56.59 -178.43 125 16 GLN A 77 ? ? -134.01 -36.71 126 16 PRO A 99 ? ? -69.69 1.44 127 16 THR A 117 ? ? -70.07 -72.67 128 17 SER A 5 ? ? -171.82 143.14 129 17 SER A 6 ? ? -46.66 164.26 130 17 LYS A 8 ? ? -57.44 176.75 131 17 TYR A 30 ? ? -34.37 140.21 132 17 GLU A 50 ? ? -58.58 -73.53 133 17 THR A 57 ? ? -55.45 -72.43 134 17 ASN A 74 ? ? 34.62 45.97 135 17 MET A 89 ? ? -38.70 -38.29 136 17 CYS A 94 ? ? -85.74 40.62 137 17 THR A 95 ? ? -102.27 -69.85 138 17 PRO A 99 ? ? -69.79 2.78 139 17 SER A 101 ? ? -47.01 151.77 140 17 TYR A 104 ? ? -78.28 -72.40 141 17 ARG A 118 ? ? -36.88 154.86 142 17 ARG A 119 ? ? -35.07 148.38 143 18 TYR A 30 ? ? -35.40 141.10 144 18 ARG A 34 ? ? -111.08 -71.61 145 18 LEU A 43 ? ? -73.98 -70.13 146 18 ASP A 85 ? ? -64.95 -70.03 147 18 PHE A 86 ? ? -34.70 -39.17 148 18 SER A 101 ? ? -51.14 175.74 149 18 ARG A 118 ? ? -39.83 131.96 150 19 SER A 3 ? ? -37.46 121.41 151 19 SER A 10 ? ? -93.49 43.49 152 19 LEU A 43 ? ? -94.33 -70.46 153 19 SER A 47 ? ? -38.88 157.51 154 19 PRO A 52 ? ? -69.71 2.66 155 19 PRO A 61 ? ? -69.76 86.65 156 19 MET A 64 ? ? -49.78 -18.03 157 19 LYS A 66 ? ? -35.76 -33.76 158 19 GLU A 84 ? ? -38.68 -27.99 159 19 PRO A 99 ? ? -69.75 2.88 160 19 SER A 101 ? ? -47.45 169.56 161 19 LEU A 115 ? ? -92.69 -60.50 162 20 SER A 5 ? ? -35.67 146.44 163 20 SER A 6 ? ? -38.73 115.98 164 20 MET A 13 ? ? -62.42 82.28 165 20 LYS A 19 ? ? -38.06 -29.91 166 20 LEU A 20 ? ? -73.10 -70.91 167 20 TYR A 30 ? ? -36.23 134.45 168 20 LEU A 51 ? ? -110.85 69.56 169 20 PHE A 86 ? ? -38.39 -38.36 170 20 PRO A 99 ? ? -69.71 2.89 #