HEADER GENE REGULATION 30-MAR-07 2YQD TITLE SOLUTION STRUCTURE OF THE FIFTH BROMODOMAIN FROM MOUSE POLYBROMO-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYBROMO-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BROMODOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PB1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060821-09; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BROMODOMAIN, FOUR HELICES, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.SANO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 10-NOV-21 2YQD 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YQD 1 VERSN REVDAT 1 02-OCT-07 2YQD 0 JRNL AUTH R.SANO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIFTH BROMODOMAIN FROM MOUSE JRNL TITL 2 POLYBROMO-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YQD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027001. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.92MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3, 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 11 97.93 -69.08 REMARK 500 1 LEU A 20 -34.27 -35.19 REMARK 500 1 TYR A 30 133.70 -37.87 REMARK 500 1 ARG A 34 -67.50 -105.13 REMARK 500 1 GLU A 50 -74.14 -75.56 REMARK 500 1 LYS A 60 72.35 -117.82 REMARK 500 1 ALA A 73 33.67 -86.23 REMARK 500 1 ASN A 74 49.27 36.50 REMARK 500 1 TYR A 76 173.05 -54.71 REMARK 500 1 PRO A 99 2.51 -69.69 REMARK 500 1 TYR A 104 -70.11 -62.87 REMARK 500 1 ARG A 118 129.20 -34.53 REMARK 500 2 MET A 13 133.03 -34.52 REMARK 500 2 ASN A 74 47.50 34.65 REMARK 500 2 PRO A 99 2.16 -69.72 REMARK 500 2 SER A 101 173.77 -50.77 REMARK 500 3 LYS A 11 -57.58 -122.08 REMARK 500 3 MET A 13 142.73 -39.25 REMARK 500 3 TYR A 30 138.73 -37.74 REMARK 500 3 ARG A 34 -70.47 -107.04 REMARK 500 3 LEU A 43 -71.60 -92.17 REMARK 500 3 GLU A 50 -75.01 -60.11 REMARK 500 3 ASN A 74 53.46 38.17 REMARK 500 3 ASP A 80 -37.53 -36.26 REMARK 500 3 PRO A 99 2.64 -69.84 REMARK 500 3 SER A 101 168.73 -45.58 REMARK 500 4 SER A 2 42.48 38.72 REMARK 500 4 TYR A 30 132.34 -34.47 REMARK 500 4 LEU A 43 -73.42 -85.39 REMARK 500 4 SER A 47 -174.94 -66.03 REMARK 500 4 LYS A 60 75.64 -119.26 REMARK 500 4 TYR A 76 176.74 -58.45 REMARK 500 4 GLN A 77 -71.59 -110.01 REMARK 500 4 TYR A 104 -70.98 -52.85 REMARK 500 4 ARG A 118 122.82 -38.46 REMARK 500 5 SER A 10 44.53 34.30 REMARK 500 5 LYS A 11 154.73 -36.52 REMARK 500 5 TYR A 12 -56.15 -125.68 REMARK 500 5 TYR A 30 135.68 -37.02 REMARK 500 5 ARG A 34 -67.74 -104.94 REMARK 500 5 GLU A 50 -73.94 -68.31 REMARK 500 5 LEU A 51 75.14 -112.04 REMARK 500 5 ILE A 58 108.56 -50.55 REMARK 500 5 ASN A 74 32.67 39.48 REMARK 500 5 GLN A 77 -31.71 -130.43 REMARK 500 5 THR A 117 -32.28 -37.85 REMARK 500 6 SER A 2 90.34 -64.24 REMARK 500 6 SER A 3 82.76 -64.99 REMARK 500 6 TYR A 12 147.05 -173.11 REMARK 500 6 TYR A 30 136.56 -34.80 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008002603.2 RELATED DB: TARGETDB DBREF 2YQD A 8 120 UNP Q8BSQ9 Q8BSQ9_MOUSE 650 762 SEQADV 2YQD GLY A 1 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD SER A 2 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD SER A 3 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD GLY A 4 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD SER A 5 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD SER A 6 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD GLY A 7 UNP Q8BSQ9 EXPRESSION TAG SEQADV 2YQD ASP A 53 UNP Q8BSQ9 GLU 695 ENGINEERED MUTATION SEQRES 1 A 120 GLY SER SER GLY SER SER GLY LYS LYS SER LYS TYR MET SEQRES 2 A 120 THR PRO MET GLN GLN LYS LEU ASN GLU VAL TYR GLU ALA SEQRES 3 A 120 VAL LYS ASN TYR THR ASP LYS ARG GLY ARG ARG LEU SER SEQRES 4 A 120 ALA ILE PHE LEU ARG LEU PRO SER ARG SER GLU LEU PRO SEQRES 5 A 120 ASP TYR TYR LEU THR ILE LYS LYS PRO MET ASP MET GLU SEQRES 6 A 120 LYS ILE ARG SER HIS MET MET ALA ASN LYS TYR GLN ASP SEQRES 7 A 120 ILE ASP SER MET VAL GLU ASP PHE VAL MET MET PHE ASN SEQRES 8 A 120 ASN ALA CYS THR TYR ASN GLU PRO GLU SER LEU ILE TYR SEQRES 9 A 120 LYS ASP ALA LEU VAL LEU HIS LYS VAL LEU LEU GLU THR SEQRES 10 A 120 ARG ARG ASP HELIX 1 1 MET A 16 TYR A 30 1 15 HELIX 2 2 SER A 39 LEU A 43 5 5 HELIX 3 3 LEU A 51 ILE A 58 1 8 HELIX 4 4 ASP A 63 ALA A 73 1 11 HELIX 5 5 ASP A 78 ASN A 97 1 20 HELIX 6 6 SER A 101 ARG A 118 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1