HEADER PROTEIN BINDING 30-MAR-07 2YQF TITLE SOLUTION STRUCTURE OF THE DEATH DOMAIN OF ANKYRIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANKYRIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEATH DOMAIN, UNP RESIDUES 1394-1497; COMPND 5 SYNONYM: ERYTHROCYTE ANKYRIN, ANKYRIN-R; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ANK1, ANK; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060123-20; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS DEATH DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YQF 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YQF 1 VERSN REVDAT 1 01-APR-08 2YQF 0 JRNL AUTH W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE DEATH DOMAIN OF ANKYRIN-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YQF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027003. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A1417 -28.33 -37.55 REMARK 500 1 ILE A1432 -72.41 -57.05 REMARK 500 1 ARG A1491 157.05 -45.38 REMARK 500 2 SER A1389 98.96 -64.98 REMARK 500 2 PRO A1394 -171.95 -69.77 REMARK 500 2 LYS A1406 -70.79 -53.39 REMARK 500 2 ILE A1432 -72.03 -59.43 REMARK 500 2 ALA A1462 95.55 -54.71 REMARK 500 2 ARG A1488 90.54 -60.22 REMARK 500 3 SER A1417 -27.68 -37.94 REMARK 500 3 ILE A1432 -71.42 -61.61 REMARK 500 3 ASN A1461 -36.54 -39.07 REMARK 500 3 ALA A1462 126.33 -36.43 REMARK 500 3 ARG A1488 109.03 -45.20 REMARK 500 3 ARG A1491 45.05 -80.99 REMARK 500 3 ASN A1492 49.59 35.16 REMARK 500 3 PRO A1495 98.61 -69.81 REMARK 500 4 SER A1389 125.14 -170.16 REMARK 500 4 SER A1391 30.70 37.48 REMARK 500 4 SER A1417 -29.81 -37.67 REMARK 500 4 ILE A1432 -72.08 -58.32 REMARK 500 4 ALA A1462 115.82 -35.13 REMARK 500 4 MET A1464 -34.84 -34.62 REMARK 500 4 ARG A1488 107.06 -50.28 REMARK 500 4 ARG A1491 147.10 -173.55 REMARK 500 5 SER A1389 102.48 -54.92 REMARK 500 5 LEU A1397 97.60 -53.72 REMARK 500 5 SER A1417 -25.89 -39.02 REMARK 500 5 ILE A1432 -71.35 -57.05 REMARK 500 5 ALA A1462 127.48 -38.87 REMARK 500 5 GLU A1478 -36.09 -36.65 REMARK 500 6 SER A1388 43.12 -90.46 REMARK 500 6 SER A1417 -28.19 -38.55 REMARK 500 6 TRP A1418 -38.93 -36.20 REMARK 500 6 MET A1464 -37.04 -39.13 REMARK 500 6 LEU A1493 144.16 -35.35 REMARK 500 7 SER A1389 134.20 -37.58 REMARK 500 7 GLU A1401 -34.40 -37.46 REMARK 500 7 SER A1417 -27.77 -37.62 REMARK 500 7 ILE A1432 -70.55 -57.18 REMARK 500 7 ASN A1461 -35.59 -38.40 REMARK 500 7 ASP A1496 160.55 -44.05 REMARK 500 8 PRO A1394 0.49 -69.75 REMARK 500 8 SER A1417 -27.06 -38.60 REMARK 500 8 ILE A1432 -71.48 -56.16 REMARK 500 8 ALA A1462 146.07 -38.57 REMARK 500 8 ASP A1496 111.25 -174.74 REMARK 500 9 SER A1398 44.92 35.52 REMARK 500 9 SER A1417 -26.17 -38.82 REMARK 500 9 GLU A1478 -34.35 -38.76 REMARK 500 REMARK 500 THIS ENTRY HAS 120 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001404.1 RELATED DB: TARGETDB DBREF 2YQF A 1394 1497 UNP P16157 ANK1_HUMAN 1394 1497 SEQADV 2YQF GLY A 1387 UNP P16157 EXPRESSION TAG SEQADV 2YQF SER A 1388 UNP P16157 EXPRESSION TAG SEQADV 2YQF SER A 1389 UNP P16157 EXPRESSION TAG SEQADV 2YQF GLY A 1390 UNP P16157 EXPRESSION TAG SEQADV 2YQF SER A 1391 UNP P16157 EXPRESSION TAG SEQADV 2YQF SER A 1392 UNP P16157 EXPRESSION TAG SEQADV 2YQF GLY A 1393 UNP P16157 EXPRESSION TAG SEQRES 1 A 111 GLY SER SER GLY SER SER GLY PRO GLY SER LEU SER GLY SEQRES 2 A 111 THR GLU GLN ALA GLU MET LYS MET ALA VAL ILE SER GLU SEQRES 3 A 111 HIS LEU GLY LEU SER TRP ALA GLU LEU ALA ARG GLU LEU SEQRES 4 A 111 GLN PHE SER VAL GLU ASP ILE ASN ARG ILE ARG VAL GLU SEQRES 5 A 111 ASN PRO ASN SER LEU LEU GLU GLN SER VAL ALA LEU LEU SEQRES 6 A 111 ASN LEU TRP VAL ILE ARG GLU GLY GLN ASN ALA ASN MET SEQRES 7 A 111 GLU ASN LEU TYR THR ALA LEU GLN SER ILE ASP ARG GLY SEQRES 8 A 111 GLU ILE VAL ASN MET LEU GLU GLY SER GLY ARG GLN SER SEQRES 9 A 111 ARG ASN LEU LYS PRO ASP ARG HELIX 1 1 THR A 1400 GLY A 1415 1 16 HELIX 2 2 SER A 1417 LEU A 1425 1 9 HELIX 3 3 SER A 1428 ASN A 1439 1 12 HELIX 4 4 SER A 1442 GLY A 1459 1 18 HELIX 5 5 ASN A 1463 ILE A 1474 1 12 HELIX 6 6 GLY A 1477 GLU A 1484 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1