HEADER TRANSCRIPTION 30-MAR-07 2YQI TITLE SOLUTION STRUCTURE OF THE SECOND HMG-BOX DOMAIN FROM HIGH MOBILITY TITLE 2 GROUP PROTEIN B3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN B3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMG-BOX DOMAIN; COMPND 5 SYNONYM: HIGH MOBILITY GROUP PROTEIN 4, HMG-4, HIGH MOBILITY GROUP COMPND 6 PROTEIN 2A, HMG-2A; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HMGB3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061030-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS HMG-BOX DOMAIN; HIGH MOBILITY GROUP PROTEIN B3; MOBILITY GROUP KEYWDS 2 PROTEIN 4; MOBILITY GROUP PROTEIN 2A, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.R.QIN,F.HAYAHSI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YQI 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YQI 1 VERSN REVDAT 1 01-APR-08 2YQI 0 JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND HMG-BOX DOMAIN FROM HIGH JRNL TITL 2 MOBILITY GROUP PROTEIN B3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YQI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027006. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.68MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 19 -39.44 -37.77 REMARK 500 1 LEU A 51 161.02 -45.74 REMARK 500 2 LEU A 51 153.45 -43.84 REMARK 500 2 SER A 79 49.36 -96.80 REMARK 500 3 LEU A 51 151.33 -47.62 REMARK 500 3 LYS A 78 51.90 -99.25 REMARK 500 3 SER A 79 79.09 -58.40 REMARK 500 4 SER A 6 121.29 -173.78 REMARK 500 4 SER A 79 93.43 -42.83 REMARK 500 5 ILE A 37 -39.53 -34.18 REMARK 500 5 LYS A 72 -70.21 -64.99 REMARK 500 5 LYS A 78 92.61 -42.83 REMARK 500 6 SER A 2 97.29 -54.99 REMARK 500 6 ARG A 12 143.75 -35.85 REMARK 500 6 ILE A 37 -38.66 -39.25 REMARK 500 7 LEU A 19 -34.84 -39.21 REMARK 500 8 ASN A 8 148.78 -34.64 REMARK 500 9 ASN A 8 -61.91 -99.78 REMARK 500 9 LEU A 19 -37.18 -39.28 REMARK 500 9 LEU A 51 161.75 -40.85 REMARK 500 10 ARG A 12 135.44 -34.25 REMARK 500 10 LEU A 51 154.28 -48.69 REMARK 500 10 LYS A 80 108.51 -59.95 REMARK 500 11 SER A 6 53.41 38.83 REMARK 500 11 ASN A 8 47.07 37.91 REMARK 500 11 ASP A 73 -65.93 -94.14 REMARK 500 12 SER A 3 -55.97 -122.73 REMARK 500 12 GLU A 71 -35.36 -37.82 REMARK 500 13 LEU A 51 156.34 -41.81 REMARK 500 13 SER A 79 45.94 -100.64 REMARK 500 14 ILE A 37 -37.86 -35.65 REMARK 500 14 LEU A 51 160.77 -47.91 REMARK 500 14 LYS A 78 37.58 -86.29 REMARK 500 14 SER A 79 -53.84 -122.42 REMARK 500 14 LYS A 80 50.05 33.30 REMARK 500 15 ARG A 12 146.50 -34.82 REMARK 500 16 ASN A 8 -60.85 -105.93 REMARK 500 16 ARG A 12 143.56 -34.55 REMARK 500 17 SER A 5 131.95 -37.57 REMARK 500 17 ASN A 8 95.74 -62.30 REMARK 500 17 ILE A 35 150.23 -41.35 REMARK 500 17 ILE A 37 -39.18 -37.37 REMARK 500 17 SER A 79 31.47 35.50 REMARK 500 17 LYS A 80 171.77 -51.98 REMARK 500 18 SER A 6 133.84 -38.68 REMARK 500 18 SER A 79 94.49 -64.08 REMARK 500 19 PRO A 14 -170.79 -69.74 REMARK 500 19 LYS A 78 47.96 -90.84 REMARK 500 20 ASN A 8 -54.90 -131.28 REMARK 500 20 ILE A 37 -37.09 -36.67 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002002696.2 RELATED DB: TARGETDB DBREF 2YQI A 8 81 UNP O15347 HMGB3_HUMAN 91 164 SEQADV 2YQI GLY A 1 UNP O15347 EXPRESSION TAG SEQADV 2YQI SER A 2 UNP O15347 EXPRESSION TAG SEQADV 2YQI SER A 3 UNP O15347 EXPRESSION TAG SEQADV 2YQI GLY A 4 UNP O15347 EXPRESSION TAG SEQADV 2YQI SER A 5 UNP O15347 EXPRESSION TAG SEQADV 2YQI SER A 6 UNP O15347 EXPRESSION TAG SEQADV 2YQI GLY A 7 UNP O15347 EXPRESSION TAG SEQRES 1 A 81 GLY SER SER GLY SER SER GLY ASN ALA PRO LYS ARG PRO SEQRES 2 A 81 PRO SER GLY PHE PHE LEU PHE CYS SER GLU PHE ARG PRO SEQRES 3 A 81 LYS ILE LYS SER THR ASN PRO GLY ILE SER ILE GLY ASP SEQRES 4 A 81 VAL ALA LYS LYS LEU GLY GLU MET TRP ASN ASN LEU ASN SEQRES 5 A 81 ASP SER GLU LYS GLN PRO TYR ILE THR LYS ALA ALA LYS SEQRES 6 A 81 LEU LYS GLU LYS TYR GLU LYS ASP VAL ALA ASP TYR LYS SEQRES 7 A 81 SER LYS GLY HELIX 1 1 SER A 15 ASN A 32 1 18 HELIX 2 2 SER A 36 LEU A 51 1 16 HELIX 3 3 ASN A 52 LYS A 78 1 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1