HEADER RNA BINDING PROTEIN 30-MAR-07 2YQR TITLE SOLUTION STRUCTURE OF THE KH DOMAIN IN KIAA0907 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KIAA0907 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KH DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0907; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060320-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS STRUCTURE GENOMICS, KH DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.KADIRVEL,F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YQR 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YQR 1 VERSN REVDAT 1 02-OCT-07 2YQR 0 JRNL AUTH S.KADIRVEL,F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE KH DOMAIN IN KIAA0907 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YQR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027015. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL (PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -178.90 59.42 REMARK 500 1 SER A 3 79.72 -115.09 REMARK 500 1 MET A 9 -61.63 -94.20 REMARK 500 1 GLU A 63 99.55 63.81 REMARK 500 1 PRO A 116 -174.90 -69.66 REMARK 500 2 SER A 2 -72.50 -106.44 REMARK 500 2 SER A 3 -178.36 57.17 REMARK 500 2 CYS A 61 93.60 -63.45 REMARK 500 2 GLU A 63 99.50 64.13 REMARK 500 2 GLU A 69 170.15 -52.40 REMARK 500 2 ASN A 112 -74.05 -92.54 REMARK 500 3 SER A 6 -172.03 56.15 REMARK 500 3 HIS A 10 -173.48 55.03 REMARK 500 3 CYS A 61 94.37 -62.81 REMARK 500 3 GLU A 63 99.53 63.81 REMARK 500 3 ASN A 112 -39.01 -167.72 REMARK 500 3 ALA A 114 97.46 59.73 REMARK 500 4 SER A 2 105.57 -53.69 REMARK 500 4 SER A 3 37.62 -167.60 REMARK 500 4 LEU A 20 26.07 -141.20 REMARK 500 4 GLU A 63 99.56 63.78 REMARK 500 4 ALA A 114 84.96 53.02 REMARK 500 5 HIS A 10 176.11 60.12 REMARK 500 5 GLU A 63 99.53 64.10 REMARK 500 5 PRO A 116 -171.35 -69.73 REMARK 500 6 GLU A 63 99.57 63.78 REMARK 500 6 PRO A 116 -177.85 -69.77 REMARK 500 7 CYS A 61 93.33 -64.25 REMARK 500 7 GLU A 63 99.49 64.10 REMARK 500 7 ALA A 70 170.62 -58.61 REMARK 500 7 PRO A 116 -175.70 -69.72 REMARK 500 8 GLU A 63 99.54 63.92 REMARK 500 9 SER A 6 177.35 62.87 REMARK 500 9 HIS A 10 174.59 63.12 REMARK 500 9 CYS A 61 92.42 -65.19 REMARK 500 9 GLU A 63 99.48 64.11 REMARK 500 9 GLU A 69 171.06 -53.06 REMARK 500 9 ILE A 111 92.17 -65.56 REMARK 500 9 ALA A 114 102.21 -160.62 REMARK 500 9 PRO A 116 -174.07 -69.78 REMARK 500 10 SER A 3 99.71 -174.96 REMARK 500 10 GLU A 63 99.57 63.83 REMARK 500 10 ILE A 111 96.20 -62.77 REMARK 500 11 SER A 2 76.38 57.21 REMARK 500 11 SER A 6 73.86 -162.87 REMARK 500 11 GLU A 63 99.58 63.84 REMARK 500 12 ASN A 28 72.00 58.44 REMARK 500 12 CYS A 61 94.97 -62.16 REMARK 500 12 GLU A 63 99.59 63.81 REMARK 500 12 ALA A 70 172.51 -57.75 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100884.3 RELATED DB: TARGETDB DBREF 2YQR A 8 119 UNP O94981 O94981_HUMAN 232 343 SEQADV 2YQR GLY A 1 UNP O94981 EXPRESSION TAG SEQADV 2YQR SER A 2 UNP O94981 EXPRESSION TAG SEQADV 2YQR SER A 3 UNP O94981 EXPRESSION TAG SEQADV 2YQR GLY A 4 UNP O94981 EXPRESSION TAG SEQADV 2YQR SER A 5 UNP O94981 EXPRESSION TAG SEQADV 2YQR SER A 6 UNP O94981 EXPRESSION TAG SEQADV 2YQR GLY A 7 UNP O94981 EXPRESSION TAG SEQRES 1 A 119 GLY SER SER GLY SER SER GLY GLY MET HIS TYR VAL GLN SEQRES 2 A 119 ASP LYS LEU PHE VAL GLY LEU GLU HIS ALA VAL PRO THR SEQRES 3 A 119 PHE ASN VAL LYS GLU LYS VAL GLU GLY PRO GLY CYS SER SEQRES 4 A 119 TYR LEU GLN HIS ILE GLN ILE GLU THR GLY ALA LYS VAL SEQRES 5 A 119 PHE LEU ARG GLY LYS GLY SER GLY CYS ILE GLU PRO ALA SEQRES 6 A 119 SER GLY ARG GLU ALA PHE GLU PRO MET TYR ILE TYR ILE SEQRES 7 A 119 SER HIS PRO LYS PRO GLU GLY LEU ALA ALA ALA LYS LYS SEQRES 8 A 119 LEU CYS GLU ASN LEU LEU GLN THR VAL HIS ALA GLU TYR SEQRES 9 A 119 SER ARG PHE VAL ASN GLN ILE ASN THR ALA VAL PRO LEU SEQRES 10 A 119 PRO GLY HELIX 1 1 VAL A 29 VAL A 33 1 5 HELIX 2 2 PRO A 36 CYS A 38 5 3 HELIX 3 3 SER A 39 GLU A 47 1 9 HELIX 4 4 PRO A 83 ILE A 111 1 29 SHEET 1 A 3 VAL A 12 PHE A 17 0 SHEET 2 A 3 TYR A 75 HIS A 80 -1 O ILE A 76 N LEU A 16 SHEET 3 A 3 LYS A 51 ARG A 55 -1 N ARG A 55 O TYR A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1