HEADER OXIDOREDUCTASE 31-MAR-07 2YQU TITLE CRYSTAL STRUCTURES AND EVOLUTIONARY RELATIONSHIP OF TWO DIFFERENT TITLE 2 LIPOAMIDE DEHYDROGENASE(E3S) FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE DEHYDROGENASE E3 COMPONENT; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIHYDROLIPOAMIDE DEHYDROGENASE; COMPND 5 EC: 1.8.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS LIPOAMIDE DEHYDROGENASE, 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, KEYWDS 2 PYRUVATE DEHYDROGENASE COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.KONDO,M.T.HOSSAIN,W.ADACHI,T.NAKAI,N.KAMIYA,K.KURAMITSU REVDAT 4 25-OCT-23 2YQU 1 REMARK REVDAT 3 13-JUL-11 2YQU 1 VERSN REVDAT 2 24-FEB-09 2YQU 1 VERSN REVDAT 1 01-APR-08 2YQU 0 JRNL AUTH H.KONDO,M.T.HOSSAIN,W.ADACHI,T.NAKAI,N.KAMIYA,S.KURAMITSU, JRNL AUTH 2 T.SEKIGUCHI,A.TAKENAKA JRNL TITL CRYSTAL STRUCTURES AND EVOLUTIONARY RELATIONSHIP OF TWO JRNL TITL 2 DIFFERENT LIPOAMIDE DEHYDROGENASE(E3S) FROM THERMUS JRNL TITL 3 THERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 94396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10510 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6905 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 778 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 972 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.615 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7178 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 6851 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9735 ; 1.104 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15836 ; 0.840 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 908 ; 5.499 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1110 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7911 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1408 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1318 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 8223 ; 0.232 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 4365 ; 0.078 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 818 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.094 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 89 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.138 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4505 ; 0.432 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7196 ; 0.825 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2673 ; 1.464 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2539 ; 2.572 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2YQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000027018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104936 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1JEH (CRYSTAL STRUCTURE OF YEAST E3, LIPOAMIDE REMARK 200 DEHYDROGENASE) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.88000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 287 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 426 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 85 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 287 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 302 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 43 23.81 -141.82 REMARK 500 GLU A 152 -72.19 -128.08 REMARK 500 SER A 162 29.96 -143.20 REMARK 500 HIS A 330 138.50 -172.98 REMARK 500 TYR A 341 34.04 -97.37 REMARK 500 GLU A 450 -81.62 -148.62 REMARK 500 VAL B 43 25.82 -144.83 REMARK 500 GLU B 152 -66.66 -134.23 REMARK 500 ASP B 279 -166.89 -77.67 REMARK 500 PHE B 328 -138.15 -105.60 REMARK 500 TYR B 341 35.90 -96.49 REMARK 500 GLU B 450 -72.37 -154.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 B 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 B 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 1602 DBREF 2YQU A 1 455 UNP Q5SLK6 Q5SLK6_THET8 1 455 DBREF 2YQU B 1 455 UNP Q5SLK6 Q5SLK6_THET8 1 455 SEQRES 1 A 455 MET TYR ASP LEU LEU VAL ILE GLY ALA GLY PRO GLY GLY SEQRES 2 A 455 TYR VAL ALA ALA ILE ARG ALA ALA GLN LEU GLY MET LYS SEQRES 3 A 455 VAL GLY VAL VAL GLU LYS GLU LYS ALA LEU GLY GLY THR SEQRES 4 A 455 CYS LEU ARG VAL GLY CYS ILE PRO SER LYS ALA LEU LEU SEQRES 5 A 455 GLU THR THR GLU ARG ILE TYR GLU ALA LYS LYS GLY LEU SEQRES 6 A 455 LEU GLY ALA LYS VAL LYS GLY VAL GLU LEU ASP LEU PRO SEQRES 7 A 455 ALA LEU MET ALA HIS LYS ASP LYS VAL VAL GLN ALA ASN SEQRES 8 A 455 THR GLN GLY VAL GLU PHE LEU PHE LYS LYS ASN GLY ILE SEQRES 9 A 455 ALA ARG HIS GLN GLY THR ALA ARG PHE LEU SER GLU ARG SEQRES 10 A 455 LYS VAL LEU VAL GLU GLU THR GLY GLU GLU LEU GLU ALA SEQRES 11 A 455 ARG TYR ILE LEU ILE ALA THR GLY SER ALA PRO LEU ILE SEQRES 12 A 455 PRO PRO TRP ALA GLN VAL ASP TYR GLU ARG VAL VAL THR SEQRES 13 A 455 SER THR GLU ALA LEU SER PHE PRO GLU VAL PRO LYS ARG SEQRES 14 A 455 LEU ILE VAL VAL GLY GLY GLY VAL ILE GLY LEU GLU LEU SEQRES 15 A 455 GLY VAL VAL TRP HIS ARG LEU GLY ALA GLU VAL ILE VAL SEQRES 16 A 455 LEU GLU TYR MET ASP ARG ILE LEU PRO THR MET ASP LEU SEQRES 17 A 455 GLU VAL SER ARG ALA ALA GLU ARG VAL PHE LYS LYS GLN SEQRES 18 A 455 GLY LEU THR ILE ARG THR GLY VAL ARG VAL THR ALA VAL SEQRES 19 A 455 VAL PRO GLU ALA LYS GLY ALA ARG VAL GLU LEU GLU GLY SEQRES 20 A 455 GLY GLU VAL LEU GLU ALA ASP ARG VAL LEU VAL ALA VAL SEQRES 21 A 455 GLY ARG ARG PRO TYR THR GLU GLY LEU SER LEU GLU ASN SEQRES 22 A 455 ALA GLY LEU SER THR ASP GLU ARG GLY ARG ILE PRO VAL SEQRES 23 A 455 ASP GLU HIS LEU ARG THR ARG VAL PRO HIS ILE TYR ALA SEQRES 24 A 455 ILE GLY ASP VAL VAL ARG GLY PRO MET LEU ALA HIS LYS SEQRES 25 A 455 ALA SER GLU GLU GLY ILE ALA ALA VAL GLU HIS MET VAL SEQRES 26 A 455 ARG GLY PHE GLY HIS VAL ASP TYR GLN ALA ILE PRO SER SEQRES 27 A 455 VAL VAL TYR THR HIS PRO GLU ILE ALA ALA VAL GLY TYR SEQRES 28 A 455 THR GLU GLU GLU LEU LYS ALA GLN GLY ILE PRO TYR LYS SEQRES 29 A 455 VAL GLY LYS PHE PRO TYR SER ALA SER GLY ARG ALA ARG SEQRES 30 A 455 ALA MET GLY GLU THR GLU GLY PHE ILE LYS VAL LEU ALA SEQRES 31 A 455 HIS ALA LYS THR ASP ARG ILE LEU GLY VAL HIS GLY ILE SEQRES 32 A 455 GLY ALA ARG VAL GLY ASP VAL LEU ALA GLU ALA ALA LEU SEQRES 33 A 455 ALA LEU PHE PHE LYS ALA SER ALA GLU ASP LEU GLY ARG SEQRES 34 A 455 ALA PRO HIS ALA HIS PRO SER LEU SER GLU ILE LEU LYS SEQRES 35 A 455 GLU ALA ALA LEU ALA ALA TRP GLU ARG PRO ILE HIS LEU SEQRES 1 B 455 MET TYR ASP LEU LEU VAL ILE GLY ALA GLY PRO GLY GLY SEQRES 2 B 455 TYR VAL ALA ALA ILE ARG ALA ALA GLN LEU GLY MET LYS SEQRES 3 B 455 VAL GLY VAL VAL GLU LYS GLU LYS ALA LEU GLY GLY THR SEQRES 4 B 455 CYS LEU ARG VAL GLY CYS ILE PRO SER LYS ALA LEU LEU SEQRES 5 B 455 GLU THR THR GLU ARG ILE TYR GLU ALA LYS LYS GLY LEU SEQRES 6 B 455 LEU GLY ALA LYS VAL LYS GLY VAL GLU LEU ASP LEU PRO SEQRES 7 B 455 ALA LEU MET ALA HIS LYS ASP LYS VAL VAL GLN ALA ASN SEQRES 8 B 455 THR GLN GLY VAL GLU PHE LEU PHE LYS LYS ASN GLY ILE SEQRES 9 B 455 ALA ARG HIS GLN GLY THR ALA ARG PHE LEU SER GLU ARG SEQRES 10 B 455 LYS VAL LEU VAL GLU GLU THR GLY GLU GLU LEU GLU ALA SEQRES 11 B 455 ARG TYR ILE LEU ILE ALA THR GLY SER ALA PRO LEU ILE SEQRES 12 B 455 PRO PRO TRP ALA GLN VAL ASP TYR GLU ARG VAL VAL THR SEQRES 13 B 455 SER THR GLU ALA LEU SER PHE PRO GLU VAL PRO LYS ARG SEQRES 14 B 455 LEU ILE VAL VAL GLY GLY GLY VAL ILE GLY LEU GLU LEU SEQRES 15 B 455 GLY VAL VAL TRP HIS ARG LEU GLY ALA GLU VAL ILE VAL SEQRES 16 B 455 LEU GLU TYR MET ASP ARG ILE LEU PRO THR MET ASP LEU SEQRES 17 B 455 GLU VAL SER ARG ALA ALA GLU ARG VAL PHE LYS LYS GLN SEQRES 18 B 455 GLY LEU THR ILE ARG THR GLY VAL ARG VAL THR ALA VAL SEQRES 19 B 455 VAL PRO GLU ALA LYS GLY ALA ARG VAL GLU LEU GLU GLY SEQRES 20 B 455 GLY GLU VAL LEU GLU ALA ASP ARG VAL LEU VAL ALA VAL SEQRES 21 B 455 GLY ARG ARG PRO TYR THR GLU GLY LEU SER LEU GLU ASN SEQRES 22 B 455 ALA GLY LEU SER THR ASP GLU ARG GLY ARG ILE PRO VAL SEQRES 23 B 455 ASP GLU HIS LEU ARG THR ARG VAL PRO HIS ILE TYR ALA SEQRES 24 B 455 ILE GLY ASP VAL VAL ARG GLY PRO MET LEU ALA HIS LYS SEQRES 25 B 455 ALA SER GLU GLU GLY ILE ALA ALA VAL GLU HIS MET VAL SEQRES 26 B 455 ARG GLY PHE GLY HIS VAL ASP TYR GLN ALA ILE PRO SER SEQRES 27 B 455 VAL VAL TYR THR HIS PRO GLU ILE ALA ALA VAL GLY TYR SEQRES 28 B 455 THR GLU GLU GLU LEU LYS ALA GLN GLY ILE PRO TYR LYS SEQRES 29 B 455 VAL GLY LYS PHE PRO TYR SER ALA SER GLY ARG ALA ARG SEQRES 30 B 455 ALA MET GLY GLU THR GLU GLY PHE ILE LYS VAL LEU ALA SEQRES 31 B 455 HIS ALA LYS THR ASP ARG ILE LEU GLY VAL HIS GLY ILE SEQRES 32 B 455 GLY ALA ARG VAL GLY ASP VAL LEU ALA GLU ALA ALA LEU SEQRES 33 B 455 ALA LEU PHE PHE LYS ALA SER ALA GLU ASP LEU GLY ARG SEQRES 34 B 455 ALA PRO HIS ALA HIS PRO SER LEU SER GLU ILE LEU LYS SEQRES 35 B 455 GLU ALA ALA LEU ALA ALA TRP GLU ARG PRO ILE HIS LEU HET CO3 A1502 4 HET FAD A1601 53 HET CO3 B1501 4 HET CO3 B1503 4 HET PO4 B1701 5 HET FAD B1602 53 HETNAM CO3 CARBONATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM PO4 PHOSPHATE ION FORMUL 3 CO3 3(C O3 2-) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 7 PO4 O4 P 3- FORMUL 9 HOH *972(H2 O) HELIX 1 1 GLY A 10 LEU A 23 1 14 HELIX 2 2 GLY A 37 GLY A 44 1 8 HELIX 3 3 GLY A 44 GLY A 64 1 21 HELIX 4 4 ASP A 76 GLY A 103 1 28 HELIX 5 5 THR A 156 LEU A 161 1 6 HELIX 6 6 GLY A 176 LEU A 189 1 14 HELIX 7 7 ASP A 207 GLY A 222 1 16 HELIX 8 8 SER A 270 GLY A 275 5 6 HELIX 9 9 GLY A 301 VAL A 304 5 4 HELIX 10 10 LEU A 309 GLY A 327 1 19 HELIX 11 11 ASP A 332 ILE A 336 5 5 HELIX 12 12 THR A 352 GLN A 359 1 8 HELIX 13 13 SER A 373 GLY A 380 1 8 HELIX 14 14 ARG A 406 PHE A 420 1 15 HELIX 15 15 SER A 423 ALA A 430 1 8 HELIX 16 16 LEU A 437 GLU A 450 1 14 HELIX 17 17 GLY B 10 LEU B 23 1 14 HELIX 18 18 GLY B 37 GLY B 44 1 8 HELIX 19 19 GLY B 44 GLY B 64 1 21 HELIX 20 20 ASP B 76 GLY B 103 1 28 HELIX 21 21 GLU B 123 GLY B 125 5 3 HELIX 22 22 THR B 156 LEU B 161 1 6 HELIX 23 23 GLY B 176 LEU B 189 1 14 HELIX 24 24 ASP B 207 GLY B 222 1 16 HELIX 25 25 SER B 270 GLY B 275 5 6 HELIX 26 26 GLY B 301 VAL B 304 5 4 HELIX 27 27 LEU B 309 GLY B 327 1 19 HELIX 28 28 ASP B 332 ILE B 336 5 5 HELIX 29 29 THR B 352 GLY B 360 1 9 HELIX 30 30 SER B 373 GLY B 380 1 8 HELIX 31 31 ARG B 406 PHE B 420 1 15 HELIX 32 32 SER B 423 ALA B 430 1 8 HELIX 33 33 LEU B 437 GLU B 450 1 14 SHEET 1 A 6 ALA A 105 GLN A 108 0 SHEET 2 A 6 VAL A 27 GLU A 31 1 N VAL A 29 O HIS A 107 SHEET 3 A 6 TYR A 2 ILE A 7 1 N VAL A 6 O VAL A 30 SHEET 4 A 6 GLU A 127 ILE A 135 1 O LEU A 134 N ILE A 7 SHEET 5 A 6 LYS A 118 VAL A 121 -1 N VAL A 119 O LEU A 128 SHEET 6 A 6 ALA A 111 PHE A 113 -1 N ARG A 112 O LEU A 120 SHEET 1 B 5 ALA A 105 GLN A 108 0 SHEET 2 B 5 VAL A 27 GLU A 31 1 N VAL A 29 O HIS A 107 SHEET 3 B 5 TYR A 2 ILE A 7 1 N VAL A 6 O VAL A 30 SHEET 4 B 5 GLU A 127 ILE A 135 1 O LEU A 134 N ILE A 7 SHEET 5 B 5 ILE A 297 ALA A 299 1 O TYR A 298 N ILE A 135 SHEET 1 C 2 ALA A 68 VAL A 70 0 SHEET 2 C 2 VAL B 73 LEU B 75 -1 O GLU B 74 N LYS A 69 SHEET 1 D 2 VAL A 73 LEU A 75 0 SHEET 2 D 2 ALA B 68 VAL B 70 -1 O LYS B 69 N GLU A 74 SHEET 1 E 2 SER A 139 PRO A 141 0 SHEET 2 E 2 ARG A 262 PRO A 264 -1 O ARG A 263 N ALA A 140 SHEET 1 F 5 VAL A 154 VAL A 155 0 SHEET 2 F 5 ARG A 255 VAL A 258 1 O VAL A 258 N VAL A 155 SHEET 3 F 5 ARG A 169 VAL A 173 1 N ILE A 171 O LEU A 257 SHEET 4 F 5 GLU A 192 LEU A 196 1 O GLU A 192 N LEU A 170 SHEET 5 F 5 THR A 224 ARG A 226 1 O ARG A 226 N VAL A 195 SHEET 1 G 3 VAL A 231 GLU A 237 0 SHEET 2 G 3 GLY A 240 LEU A 245 -1 O GLU A 244 N THR A 232 SHEET 3 G 3 VAL A 250 ALA A 253 -1 O LEU A 251 N VAL A 243 SHEET 1 H 5 SER A 338 VAL A 340 0 SHEET 2 H 5 GLU A 345 GLY A 350 -1 O ILE A 346 N VAL A 340 SHEET 3 H 5 ILE A 397 GLY A 404 -1 O GLY A 402 N ALA A 347 SHEET 4 H 5 PHE A 385 HIS A 391 -1 N LEU A 389 O LEU A 398 SHEET 5 H 5 TYR A 363 PRO A 369 -1 N LYS A 364 O ALA A 390 SHEET 1 I 6 ALA B 105 GLN B 108 0 SHEET 2 I 6 VAL B 27 GLU B 31 1 N VAL B 29 O HIS B 107 SHEET 3 I 6 TYR B 2 ILE B 7 1 N VAL B 6 O VAL B 30 SHEET 4 I 6 GLU B 127 ILE B 135 1 O LEU B 134 N ILE B 7 SHEET 5 I 6 LYS B 118 VAL B 121 -1 N VAL B 119 O LEU B 128 SHEET 6 I 6 ALA B 111 SER B 115 -1 N ARG B 112 O LEU B 120 SHEET 1 J 5 ALA B 105 GLN B 108 0 SHEET 2 J 5 VAL B 27 GLU B 31 1 N VAL B 29 O HIS B 107 SHEET 3 J 5 TYR B 2 ILE B 7 1 N VAL B 6 O VAL B 30 SHEET 4 J 5 GLU B 127 ILE B 135 1 O LEU B 134 N ILE B 7 SHEET 5 J 5 ILE B 297 ALA B 299 1 O TYR B 298 N ILE B 135 SHEET 1 K 2 SER B 139 PRO B 141 0 SHEET 2 K 2 ARG B 262 PRO B 264 -1 O ARG B 263 N ALA B 140 SHEET 1 L 5 VAL B 154 VAL B 155 0 SHEET 2 L 5 ARG B 255 VAL B 258 1 O VAL B 256 N VAL B 155 SHEET 3 L 5 ARG B 169 VAL B 173 1 N ILE B 171 O LEU B 257 SHEET 4 L 5 GLU B 192 LEU B 196 1 O ILE B 194 N VAL B 172 SHEET 5 L 5 THR B 224 ARG B 226 1 O ARG B 226 N VAL B 195 SHEET 1 M 3 VAL B 231 GLU B 237 0 SHEET 2 M 3 GLY B 240 LEU B 245 -1 O GLU B 244 N ALA B 233 SHEET 3 M 3 VAL B 250 ALA B 253 -1 O LEU B 251 N VAL B 243 SHEET 1 N 5 SER B 338 VAL B 340 0 SHEET 2 N 5 GLU B 345 GLY B 350 -1 O ILE B 346 N VAL B 340 SHEET 3 N 5 ILE B 397 GLY B 404 -1 O GLY B 402 N ALA B 347 SHEET 4 N 5 PHE B 385 HIS B 391 -1 N LYS B 387 O HIS B 401 SHEET 5 N 5 TYR B 363 PRO B 369 -1 N GLY B 366 O VAL B 388 SSBOND 1 CYS A 40 CYS A 45 1555 1555 2.06 SSBOND 2 CYS B 40 CYS B 45 1555 1555 2.05 CISPEP 1 HIS A 343 PRO A 344 0 5.78 CISPEP 2 HIS A 434 PRO A 435 0 -7.51 CISPEP 3 HIS B 343 PRO B 344 0 4.54 CISPEP 4 HIS B 434 PRO B 435 0 -8.72 SITE 1 AC1 2 SER B 423 ASP B 426 SITE 1 AC2 8 PRO A 11 ALA A 310 SER A 314 HOH A1693 SITE 2 AC2 8 HOH A1829 HOH A2036 HIS B 434 HOH B1945 SITE 1 AC3 8 HIS A 434 HOH A1757 HOH A1816 ALA B 310 SITE 2 AC3 8 HIS B 311 SER B 314 HOH B1878 HOH B1940 SITE 1 AC4 4 ARG B 396 LYS B 421 HOH B1780 HOH B1888 SITE 1 AC5 36 GLY A 8 GLY A 10 PRO A 11 GLY A 12 SITE 2 AC5 36 GLU A 31 LYS A 32 GLU A 33 GLY A 38 SITE 3 AC5 36 THR A 39 CYS A 40 ARG A 42 GLY A 44 SITE 4 AC5 36 CYS A 45 SER A 48 LYS A 49 GLY A 109 SITE 5 AC5 36 THR A 110 ALA A 111 ALA A 136 THR A 137 SITE 6 AC5 36 GLY A 138 ILE A 178 ARG A 262 TYR A 265 SITE 7 AC5 36 GLY A 301 ASP A 302 MET A 308 LEU A 309 SITE 8 AC5 36 ALA A 310 ALA A 313 HOH A1610 HOH A1692 SITE 9 AC5 36 HOH A1944 HOH A2033 HIS B 434 PRO B 435 SITE 1 AC6 38 HIS A 434 PRO A 435 GLY B 8 GLY B 10 SITE 2 AC6 38 PRO B 11 GLY B 12 GLU B 31 LYS B 32 SITE 3 AC6 38 GLU B 33 GLY B 38 THR B 39 CYS B 40 SITE 4 AC6 38 ARG B 42 GLY B 44 CYS B 45 SER B 48 SITE 5 AC6 38 LYS B 49 GLY B 109 THR B 110 ALA B 111 SITE 6 AC6 38 ALA B 136 THR B 137 GLY B 138 ILE B 178 SITE 7 AC6 38 ARG B 262 TYR B 265 GLY B 301 ASP B 302 SITE 8 AC6 38 MET B 308 LEU B 309 ALA B 310 HIS B 311 SITE 9 AC6 38 ALA B 313 HOH B1704 HOH B1706 HOH B1983 SITE 10 AC6 38 HOH B2072 HOH B2129 CRYST1 54.411 105.760 84.907 90.00 92.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018379 0.000000 0.000851 0.00000 SCALE2 0.000000 0.009455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011790 0.00000