HEADER OXIDOREDUCTASE 31-MAR-07 2YQW OBSLTE 15-APR-08 2YQW 2ZKX TITLE CRYSTAL STRUCTURE OF HUMAN CU-ZN SUPEROXIDE DISMUTASE MUTANT G85R TITLE 2 (I212121) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P KEYWDS OXIDOREDUCTASE, HUMAN CU, ZN SUPEROXIDE DISMUTASE, ALS, FALS, METAL- KEYWDS 2 BINDING, DISEASE MUTATION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR S.YOSHIKAWA,K.ITO,M.KUKIMOTO-NIINO,L.CHEN,Z.Q.FU,J.CHRZAS,B.C.WANG, AUTHOR 2 M.SHIROUZU,R.TAKAHASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 3 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 04-APR-12 2YQW 1 OBSLTE VERSN REVDAT 2 15-APR-08 2YQW 1 OBSLTE REVDAT 1 01-APR-08 2YQW 0 JRNL AUTH S.YOSHIKAWA,K.ITO,M.KUKIMOTO-NIINO,L.CHEN,Z.Q.FU,J.CHRZAS, JRNL AUTH 2 B.C.WANG,M.SHIROUZU,R.TAKAHASHI,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF HUMAN CU-ZN SUPEROXIDE DISMUTASE MUTANT JRNL TITL 2 G85R (I212121) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 261310.100 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 15429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1524 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1679 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 175 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.05000 REMARK 3 B22 (A**2) : 1.23000 REMARK 3 B33 (A**2) : -13.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.45 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.81 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.520 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.450 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.890 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 36.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.341 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14400 REMARK 200 FOR THE DATA SET : 12.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35900 REMARK 200 FOR SHELL : 2.704 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1HL5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE (PH4.6), 1.5M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.55250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.18750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.18750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.55250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.55250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.54000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.18750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.54000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.55250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.18750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 LEU A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 GLY B -5 REMARK 465 PRO B -4 REMARK 465 LEU B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 GLY C -5 REMARK 465 PRO C -4 REMARK 465 LEU C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 GLN C 153 REMARK 465 GLY D -5 REMARK 465 PRO D -4 REMARK 465 LEU D -3 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 MET D 0 REMARK 465 ALA D 1 REMARK 465 LYS D 23 REMARK 465 GLU D 24 REMARK 465 SER D 25 REMARK 465 ASN D 26 REMARK 465 GLY D 27 REMARK 465 SER D 68 REMARK 465 ARG D 69 REMARK 465 LYS D 70 REMARK 465 HIS D 71 REMARK 465 GLY D 72 REMARK 465 GLY D 73 REMARK 465 PRO D 74 REMARK 465 LYS D 75 REMARK 465 ASP D 76 REMARK 465 GLU D 77 REMARK 465 GLU D 78 REMARK 465 ARG D 79 REMARK 465 HIS D 80 REMARK 465 VAL D 81 REMARK 465 LEU D 126 REMARK 465 GLY D 127 REMARK 465 LYS D 128 REMARK 465 GLY D 129 REMARK 465 GLY D 130 REMARK 465 ASN D 131 REMARK 465 GLU D 132 REMARK 465 GLU D 133 REMARK 465 SER D 134 REMARK 465 THR D 135 REMARK 465 LYS D 136 REMARK 465 THR D 137 REMARK 465 GLY D 138 REMARK 465 ASN D 139 REMARK 465 GLN D 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 LEU D 67 CD1 LEU D 67 6455 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 68 68.44 36.00 REMARK 500 PRO A 74 150.25 -45.10 REMARK 500 LYS A 75 -98.12 -35.57 REMARK 500 ASP A 76 51.42 -90.13 REMARK 500 ARG A 85 -131.55 56.70 REMARK 500 ASP A 90 -167.10 -70.98 REMARK 500 SER A 107 127.85 -171.49 REMARK 500 LEU A 126 15.01 48.29 REMARK 500 ASN A 131 138.58 158.50 REMARK 500 SER A 142 175.11 -57.48 REMARK 500 LEU B 8 80.42 -65.30 REMARK 500 LYS B 23 -78.32 -64.77 REMARK 500 PHE B 64 98.91 -69.53 REMARK 500 SER B 68 70.66 52.10 REMARK 500 ARG B 85 -136.60 53.07 REMARK 500 ASP B 90 -145.71 -99.82 REMARK 500 SER B 98 97.85 -162.25 REMARK 500 SER B 107 133.18 -173.53 REMARK 500 THR B 137 16.19 -141.91 REMARK 500 GLN C 15 158.48 176.03 REMARK 500 ASN C 26 12.19 51.74 REMARK 500 SER C 68 76.01 47.16 REMARK 500 LYS C 75 6.48 -65.23 REMARK 500 ARG C 85 -137.61 64.51 REMARK 500 LYS C 128 0.81 -58.38 REMARK 500 GLU C 132 45.40 -65.25 REMARK 500 GLU C 133 -40.96 -141.22 REMARK 500 GLU D 40 127.05 -39.87 REMARK 500 SER D 59 -0.60 -59.22 REMARK 500 ARG D 85 -129.37 75.31 REMARK 500 SER D 98 89.76 -168.49 REMARK 500 ALA D 123 -170.82 -62.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 141.8 REMARK 620 3 HIS A 120 NE2 103.0 113.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 46 ND1 REMARK 620 2 HIS B 48 NE2 139.3 REMARK 620 3 HIS B 120 NE2 89.6 113.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 303 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 46 ND1 REMARK 620 2 HIS C 48 NE2 145.9 REMARK 620 3 HIS C 120 NE2 89.4 122.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 304 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 46 ND1 REMARK 620 2 HIS D 48 NE2 113.6 REMARK 620 3 HIS D 120 NE2 109.0 106.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 101.0 REMARK 620 3 HIS A 80 ND1 120.9 124.9 REMARK 620 4 ASP A 83 OD1 93.5 87.2 120.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 63 ND1 REMARK 620 2 HIS B 71 ND1 112.3 REMARK 620 3 HIS B 80 ND1 99.6 132.8 REMARK 620 4 ASP B 83 OD1 105.9 94.7 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 63 ND1 REMARK 620 2 HIS C 71 ND1 106.2 REMARK 620 3 HIS C 80 ND1 116.5 118.4 REMARK 620 4 ASP C 83 OD1 105.9 98.6 109.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YQV RELATED DB: PDB REMARK 900 HUMAN CU-ZN SUPEROXIDE DISMUTASE MUTANT G85R (P21) REMARK 900 RELATED ID: 2YQX RELATED DB: PDB REMARK 900 HUMAN CU-ZN SUPEROXIDE DISMUTASE MUTANT G93A REMARK 900 RELATED ID: AR_001000134.1 RELATED DB: TARGETDB DBREF 2YQW A 0 153 UNP P00441 SODC_HUMAN 1 154 DBREF 2YQW B 0 153 UNP P00441 SODC_HUMAN 1 154 DBREF 2YQW C 0 153 UNP P00441 SODC_HUMAN 1 154 DBREF 2YQW D 0 153 UNP P00441 SODC_HUMAN 1 154 SEQADV 2YQW GLY A -5 UNP P00441 EXPRESSION TAG SEQADV 2YQW PRO A -4 UNP P00441 EXPRESSION TAG SEQADV 2YQW LEU A -3 UNP P00441 EXPRESSION TAG SEQADV 2YQW GLY A -2 UNP P00441 EXPRESSION TAG SEQADV 2YQW SER A -1 UNP P00441 EXPRESSION TAG SEQADV 2YQW ARG A 85 UNP P00441 GLY 86 ENGINEERED SEQADV 2YQW GLY B -5 UNP P00441 EXPRESSION TAG SEQADV 2YQW PRO B -4 UNP P00441 EXPRESSION TAG SEQADV 2YQW LEU B -3 UNP P00441 EXPRESSION TAG SEQADV 2YQW GLY B -2 UNP P00441 EXPRESSION TAG SEQADV 2YQW SER B -1 UNP P00441 EXPRESSION TAG SEQADV 2YQW ARG B 85 UNP P00441 GLY 86 ENGINEERED SEQADV 2YQW GLY C -5 UNP P00441 EXPRESSION TAG SEQADV 2YQW PRO C -4 UNP P00441 EXPRESSION TAG SEQADV 2YQW LEU C -3 UNP P00441 EXPRESSION TAG SEQADV 2YQW GLY C -2 UNP P00441 EXPRESSION TAG SEQADV 2YQW SER C -1 UNP P00441 EXPRESSION TAG SEQADV 2YQW ARG C 85 UNP P00441 GLY 86 ENGINEERED SEQADV 2YQW GLY D -5 UNP P00441 EXPRESSION TAG SEQADV 2YQW PRO D -4 UNP P00441 EXPRESSION TAG SEQADV 2YQW LEU D -3 UNP P00441 EXPRESSION TAG SEQADV 2YQW GLY D -2 UNP P00441 EXPRESSION TAG SEQADV 2YQW SER D -1 UNP P00441 EXPRESSION TAG SEQADV 2YQW ARG D 85 UNP P00441 GLY 86 ENGINEERED SEQRES 1 A 159 GLY PRO LEU GLY SER MET ALA THR LYS ALA VAL CYS VAL SEQRES 2 A 159 LEU LYS GLY ASP GLY PRO VAL GLN GLY ILE ILE ASN PHE SEQRES 3 A 159 GLU GLN LYS GLU SER ASN GLY PRO VAL LYS VAL TRP GLY SEQRES 4 A 159 SER ILE LYS GLY LEU THR GLU GLY LEU HIS GLY PHE HIS SEQRES 5 A 159 VAL HIS GLU PHE GLY ASP ASN THR ALA GLY CYS THR SER SEQRES 6 A 159 ALA GLY PRO HIS PHE ASN PRO LEU SER ARG LYS HIS GLY SEQRES 7 A 159 GLY PRO LYS ASP GLU GLU ARG HIS VAL GLY ASP LEU ARG SEQRES 8 A 159 ASN VAL THR ALA ASP LYS ASP GLY VAL ALA ASP VAL SER SEQRES 9 A 159 ILE GLU ASP SER VAL ILE SER LEU SER GLY ASP HIS CYS SEQRES 10 A 159 ILE ILE GLY ARG THR LEU VAL VAL HIS GLU LYS ALA ASP SEQRES 11 A 159 ASP LEU GLY LYS GLY GLY ASN GLU GLU SER THR LYS THR SEQRES 12 A 159 GLY ASN ALA GLY SER ARG LEU ALA CYS GLY VAL ILE GLY SEQRES 13 A 159 ILE ALA GLN SEQRES 1 B 159 GLY PRO LEU GLY SER MET ALA THR LYS ALA VAL CYS VAL SEQRES 2 B 159 LEU LYS GLY ASP GLY PRO VAL GLN GLY ILE ILE ASN PHE SEQRES 3 B 159 GLU GLN LYS GLU SER ASN GLY PRO VAL LYS VAL TRP GLY SEQRES 4 B 159 SER ILE LYS GLY LEU THR GLU GLY LEU HIS GLY PHE HIS SEQRES 5 B 159 VAL HIS GLU PHE GLY ASP ASN THR ALA GLY CYS THR SER SEQRES 6 B 159 ALA GLY PRO HIS PHE ASN PRO LEU SER ARG LYS HIS GLY SEQRES 7 B 159 GLY PRO LYS ASP GLU GLU ARG HIS VAL GLY ASP LEU ARG SEQRES 8 B 159 ASN VAL THR ALA ASP LYS ASP GLY VAL ALA ASP VAL SER SEQRES 9 B 159 ILE GLU ASP SER VAL ILE SER LEU SER GLY ASP HIS CYS SEQRES 10 B 159 ILE ILE GLY ARG THR LEU VAL VAL HIS GLU LYS ALA ASP SEQRES 11 B 159 ASP LEU GLY LYS GLY GLY ASN GLU GLU SER THR LYS THR SEQRES 12 B 159 GLY ASN ALA GLY SER ARG LEU ALA CYS GLY VAL ILE GLY SEQRES 13 B 159 ILE ALA GLN SEQRES 1 C 159 GLY PRO LEU GLY SER MET ALA THR LYS ALA VAL CYS VAL SEQRES 2 C 159 LEU LYS GLY ASP GLY PRO VAL GLN GLY ILE ILE ASN PHE SEQRES 3 C 159 GLU GLN LYS GLU SER ASN GLY PRO VAL LYS VAL TRP GLY SEQRES 4 C 159 SER ILE LYS GLY LEU THR GLU GLY LEU HIS GLY PHE HIS SEQRES 5 C 159 VAL HIS GLU PHE GLY ASP ASN THR ALA GLY CYS THR SER SEQRES 6 C 159 ALA GLY PRO HIS PHE ASN PRO LEU SER ARG LYS HIS GLY SEQRES 7 C 159 GLY PRO LYS ASP GLU GLU ARG HIS VAL GLY ASP LEU ARG SEQRES 8 C 159 ASN VAL THR ALA ASP LYS ASP GLY VAL ALA ASP VAL SER SEQRES 9 C 159 ILE GLU ASP SER VAL ILE SER LEU SER GLY ASP HIS CYS SEQRES 10 C 159 ILE ILE GLY ARG THR LEU VAL VAL HIS GLU LYS ALA ASP SEQRES 11 C 159 ASP LEU GLY LYS GLY GLY ASN GLU GLU SER THR LYS THR SEQRES 12 C 159 GLY ASN ALA GLY SER ARG LEU ALA CYS GLY VAL ILE GLY SEQRES 13 C 159 ILE ALA GLN SEQRES 1 D 159 GLY PRO LEU GLY SER MET ALA THR LYS ALA VAL CYS VAL SEQRES 2 D 159 LEU LYS GLY ASP GLY PRO VAL GLN GLY ILE ILE ASN PHE SEQRES 3 D 159 GLU GLN LYS GLU SER ASN GLY PRO VAL LYS VAL TRP GLY SEQRES 4 D 159 SER ILE LYS GLY LEU THR GLU GLY LEU HIS GLY PHE HIS SEQRES 5 D 159 VAL HIS GLU PHE GLY ASP ASN THR ALA GLY CYS THR SER SEQRES 6 D 159 ALA GLY PRO HIS PHE ASN PRO LEU SER ARG LYS HIS GLY SEQRES 7 D 159 GLY PRO LYS ASP GLU GLU ARG HIS VAL GLY ASP LEU ARG SEQRES 8 D 159 ASN VAL THR ALA ASP LYS ASP GLY VAL ALA ASP VAL SER SEQRES 9 D 159 ILE GLU ASP SER VAL ILE SER LEU SER GLY ASP HIS CYS SEQRES 10 D 159 ILE ILE GLY ARG THR LEU VAL VAL HIS GLU LYS ALA ASP SEQRES 11 D 159 ASP LEU GLY LYS GLY GLY ASN GLU GLU SER THR LYS THR SEQRES 12 D 159 GLY ASN ALA GLY SER ARG LEU ALA CYS GLY VAL ILE GLY SEQRES 13 D 159 ILE ALA GLN HET CU A 301 1 HET ZN A 401 1 HET CU B 302 1 HET ZN B 402 1 HET CU C 303 1 HET ZN C 403 1 HET CU D 304 1 HET ZN D 404 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 5 CU 4(CU 2+) FORMUL 6 ZN 4(ZN 2+) FORMUL 13 HOH *29(H2 O) HELIX 1 1 ALA A 55 GLY A 61 5 7 HELIX 2 2 ASN A 131 LYS A 136 5 6 HELIX 3 3 ALA B 55 GLY B 61 5 7 HELIX 4 4 ASN B 131 GLY B 138 1 8 HELIX 5 5 ALA C 55 GLY C 61 5 7 HELIX 6 6 SER D 107 CYS D 111 5 5 SHEET 1 A 5 ALA A 95 ASP A 101 0 SHEET 2 A 5 VAL A 29 LYS A 36 -1 N GLY A 33 O VAL A 97 SHEET 3 A 5 GLN A 15 GLN A 22 -1 N GLU A 21 O LYS A 30 SHEET 4 A 5 THR A 2 LYS A 9 -1 N THR A 2 O GLN A 22 SHEET 5 A 5 GLY A 150 ALA A 152 -1 O ALA A 152 N LYS A 3 SHEET 1 B 4 ASP A 83 ALA A 89 0 SHEET 2 B 4 GLY A 41 VAL A 47 -1 N GLY A 41 O ALA A 89 SHEET 3 B 4 THR A 116 HIS A 120 -1 O VAL A 118 N HIS A 46 SHEET 4 B 4 ARG A 143 VAL A 148 -1 O GLY A 147 N LEU A 117 SHEET 1 C 5 ALA B 95 ASP B 101 0 SHEET 2 C 5 VAL B 29 LYS B 36 -1 N VAL B 31 O ILE B 99 SHEET 3 C 5 GLN B 15 GLN B 22 -1 N GLU B 21 O LYS B 30 SHEET 4 C 5 THR B 2 VAL B 7 -1 N ALA B 4 O PHE B 20 SHEET 5 C 5 GLY B 150 ILE B 151 -1 O GLY B 150 N VAL B 5 SHEET 1 D 4 ASP B 83 ALA B 89 0 SHEET 2 D 4 GLY B 41 HIS B 48 -1 N HIS B 43 O VAL B 87 SHEET 3 D 4 THR B 116 HIS B 120 -1 O THR B 116 N HIS B 48 SHEET 4 D 4 ARG B 143 VAL B 148 -1 O GLY B 147 N LEU B 117 SHEET 1 E 5 ALA C 95 ASP C 101 0 SHEET 2 E 5 VAL C 29 LYS C 36 -1 N VAL C 31 O ILE C 99 SHEET 3 E 5 GLN C 15 GLU C 21 -1 N GLU C 21 O LYS C 30 SHEET 4 E 5 LYS C 3 LYS C 9 -1 N ALA C 4 O PHE C 20 SHEET 5 E 5 GLY C 150 ALA C 152 -1 O ALA C 152 N LYS C 3 SHEET 1 F 4 ASP C 83 ALA C 89 0 SHEET 2 F 4 GLY C 41 HIS C 48 -1 N PHE C 45 O ARG C 85 SHEET 3 F 4 THR C 116 HIS C 120 -1 O THR C 116 N HIS C 48 SHEET 4 F 4 ARG C 143 VAL C 148 -1 O ALA C 145 N VAL C 119 SHEET 1 G 8 ASP D 83 ALA D 89 0 SHEET 2 G 8 GLY D 41 HIS D 48 -1 N GLY D 41 O ALA D 89 SHEET 3 G 8 THR D 116 HIS D 120 -1 O THR D 116 N HIS D 48 SHEET 4 G 8 ARG D 143 ALA D 152 -1 O LEU D 144 N VAL D 119 SHEET 5 G 8 LYS D 3 LYS D 9 -1 N LYS D 3 O ALA D 152 SHEET 6 G 8 GLN D 15 GLU D 21 -1 O PHE D 20 N ALA D 4 SHEET 7 G 8 VAL D 29 LYS D 36 -1 O TRP D 32 N ASN D 19 SHEET 8 G 8 VAL D 94 ASP D 101 -1 O ALA D 95 N ILE D 35 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.05 SSBOND 2 CYS B 57 CYS B 146 1555 1555 2.04 SSBOND 3 CYS C 57 CYS C 146 1555 1555 2.05 SSBOND 4 CYS D 57 CYS D 146 1555 1555 2.04 LINK CU CU A 301 ND1 HIS A 46 1555 1555 1.99 LINK CU CU A 301 NE2 HIS A 48 1555 1555 2.28 LINK CU CU A 301 NE2 HIS A 120 1555 1555 2.12 LINK CU CU B 302 ND1 HIS B 46 1555 1555 2.43 LINK CU CU B 302 NE2 HIS B 48 1555 1555 2.27 LINK CU CU B 302 NE2 HIS B 120 1555 1555 2.13 LINK CU CU C 303 ND1 HIS C 46 1555 1555 2.10 LINK CU CU C 303 NE2 HIS C 48 1555 1555 2.07 LINK CU CU C 303 NE2 HIS C 120 1555 1555 2.02 LINK CU CU D 304 ND1 HIS D 46 1555 1555 2.29 LINK CU CU D 304 NE2 HIS D 48 1555 1555 2.36 LINK CU CU D 304 NE2 HIS D 120 1555 1555 2.10 LINK ZN ZN A 401 ND1 HIS A 63 1555 1555 2.11 LINK ZN ZN A 401 ND1 HIS A 71 1555 1555 2.16 LINK ZN ZN A 401 ND1 HIS A 80 1555 1555 2.11 LINK ZN ZN A 401 OD1 ASP A 83 1555 1555 1.95 LINK ZN ZN B 402 ND1 HIS B 63 1555 1555 1.97 LINK ZN ZN B 402 ND1 HIS B 71 1555 1555 2.19 LINK ZN ZN B 402 ND1 HIS B 80 1555 1555 2.16 LINK ZN ZN B 402 OD1 ASP B 83 1555 1555 2.02 LINK ZN ZN C 403 ND1 HIS C 63 1555 1555 2.19 LINK ZN ZN C 403 ND1 HIS C 71 1555 1555 2.14 LINK ZN ZN C 403 ND1 HIS C 80 1555 1555 2.08 LINK ZN ZN C 403 OD1 ASP C 83 1555 1555 2.05 LINK ZN ZN D 404 ND1 HIS D 63 1555 1555 2.20 SITE 1 AC1 4 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 1 AC2 4 HIS B 46 HIS B 48 HIS B 63 HIS B 120 SITE 1 AC3 4 HIS C 46 HIS C 48 HIS C 63 HIS C 120 SITE 1 AC4 4 HIS D 46 HIS D 48 HIS D 63 HIS D 120 SITE 1 AC5 5 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 2 AC5 5 LYS A 136 SITE 1 AC6 4 HIS B 63 HIS B 71 HIS B 80 ASP B 83 SITE 1 AC7 4 HIS C 63 HIS C 71 HIS C 80 ASP C 83 SITE 1 AC8 2 HIS D 63 ASP D 83 CRYST1 73.105 113.080 146.375 90.00 90.00 90.00 I 21 21 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013679 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006832 0.00000