data_2YR3 # _entry.id 2YR3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YR3 pdb_00002yr3 10.2210/pdb2yr3/pdb RCSB RCSB027027 ? ? WWPDB D_1000027027 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsb001012216.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2YR3 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-04-02 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Qin, X.R.' 1 'Kurosaki, C.' 2 'Yoshida, M.' 3 'Hayahsi, F.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the fourth Ig-like domain from myosin light chain kinase, smooth muscle' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qin, X.R.' 1 ? primary 'Kurosaki, C.' 2 ? primary 'Yoshida, M.' 3 ? primary 'Hayashi, F.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Myosin light chain kinase, smooth muscle' _entity.formula_weight 10457.673 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.7.11.18 _entity.pdbx_mutation ? _entity.pdbx_fragment 'Ig domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MLCK, Telokin, Kinase-related protein, KRP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYT CLAENALGQVSCSAWVTVH ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYT CLAENALGQVSCSAWVTVH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsb001012216.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 GLU n 1 10 VAL n 1 11 ALA n 1 12 PRO n 1 13 SER n 1 14 PHE n 1 15 SER n 1 16 SER n 1 17 VAL n 1 18 LEU n 1 19 LYS n 1 20 ASP n 1 21 CYS n 1 22 ALA n 1 23 VAL n 1 24 ILE n 1 25 GLU n 1 26 GLY n 1 27 GLN n 1 28 ASP n 1 29 PHE n 1 30 VAL n 1 31 LEU n 1 32 GLN n 1 33 CYS n 1 34 SER n 1 35 VAL n 1 36 ARG n 1 37 GLY n 1 38 THR n 1 39 PRO n 1 40 VAL n 1 41 PRO n 1 42 ARG n 1 43 ILE n 1 44 THR n 1 45 TRP n 1 46 LEU n 1 47 LEU n 1 48 ASN n 1 49 GLY n 1 50 GLN n 1 51 PRO n 1 52 ILE n 1 53 GLN n 1 54 TYR n 1 55 ALA n 1 56 ARG n 1 57 SER n 1 58 THR n 1 59 CYS n 1 60 GLU n 1 61 ALA n 1 62 GLY n 1 63 VAL n 1 64 ALA n 1 65 GLU n 1 66 LEU n 1 67 HIS n 1 68 ILE n 1 69 GLN n 1 70 ASP n 1 71 ALA n 1 72 LEU n 1 73 PRO n 1 74 GLU n 1 75 ASP n 1 76 HIS n 1 77 GLY n 1 78 THR n 1 79 TYR n 1 80 THR n 1 81 CYS n 1 82 LEU n 1 83 ALA n 1 84 GLU n 1 85 ASN n 1 86 ALA n 1 87 LEU n 1 88 GLY n 1 89 GLN n 1 90 VAL n 1 91 SER n 1 92 CYS n 1 93 SER n 1 94 ALA n 1 95 TRP n 1 96 VAL n 1 97 THR n 1 98 VAL n 1 99 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene MYLK _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P061030-13 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MYLK_HUMAN _struct_ref.pdbx_db_accession Q15746 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENAL GQVSCSAWVTVH ; _struct_ref.pdbx_align_begin 510 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YR3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 99 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q15746 _struct_ref_seq.db_align_beg 510 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 601 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YR3 GLY A 1 ? UNP Q15746 ? ? 'expression tag' 1 1 1 2YR3 SER A 2 ? UNP Q15746 ? ? 'expression tag' 2 2 1 2YR3 SER A 3 ? UNP Q15746 ? ? 'expression tag' 3 3 1 2YR3 GLY A 4 ? UNP Q15746 ? ? 'expression tag' 4 4 1 2YR3 SER A 5 ? UNP Q15746 ? ? 'expression tag' 5 5 1 2YR3 SER A 6 ? UNP Q15746 ? ? 'expression tag' 6 6 1 2YR3 GLY A 7 ? UNP Q15746 ? ? 'expression tag' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.13mM 13C, 15N-labeled protein; 20mM d-Tris-HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer JEOL _pdbx_nmr_spectrometer.model ECA _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.entry_id 2YR3 _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.entry_id 2YR3 _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' _pdbx_nmr_representative.entry_id 2YR3 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection Delta 4.3 JEOL 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9820 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.method 'SOLUTION NMR' _exptl.entry_id 2YR3 _exptl.crystals_number ? # _struct.entry_id 2YR3 _struct.title 'Solution structure of the fourth Ig-like domain from myosin light chain kinase, smooth muscle' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YR3 _struct_keywords.text ;Ig domain, Myosin light chain kinase, smooth muscle, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; _struct_keywords.pdbx_keywords TRANSFERASE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 1 -0.09 2 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 2 -0.12 3 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 3 -0.07 4 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 4 -0.02 5 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 5 -0.10 6 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 6 0.00 7 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 7 -0.08 8 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 8 0.01 9 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 9 -0.01 10 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 10 -0.06 11 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 11 -0.07 12 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 12 -0.08 13 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 13 -0.04 14 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 14 -0.04 15 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 15 -0.04 16 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 16 -0.05 17 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 17 0.03 18 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 18 -0.06 19 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 19 -0.07 20 THR 38 A . ? THR 38 A PRO 39 A ? PRO 39 A 20 -0.08 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 3 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 10 ? SER A 16 ? VAL A 10 SER A 16 A 2 SER A 34 ? THR A 38 ? SER A 34 THR A 38 B 1 CYS A 21 ? ILE A 24 ? CYS A 21 ILE A 24 B 2 VAL A 96 ? HIS A 99 ? VAL A 96 HIS A 99 C 1 PHE A 29 ? GLN A 32 ? PHE A 29 GLN A 32 C 2 VAL A 63 ? ILE A 68 ? VAL A 63 ILE A 68 C 3 THR A 58 ? GLU A 60 ? THR A 58 GLU A 60 D 1 THR A 44 ? LEU A 47 ? THR A 44 LEU A 47 D 2 TYR A 79 ? GLU A 84 ? TYR A 79 GLU A 84 D 3 GLN A 89 ? SER A 93 ? GLN A 89 SER A 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 13 ? N SER A 13 O ARG A 36 ? O ARG A 36 B 1 2 N CYS A 21 ? N CYS A 21 O THR A 97 ? O THR A 97 C 1 2 N LEU A 31 ? N LEU A 31 O LEU A 66 ? O LEU A 66 C 2 3 O GLU A 65 ? O GLU A 65 N THR A 58 ? N THR A 58 D 1 2 N LEU A 46 ? N LEU A 46 O THR A 80 ? O THR A 80 D 2 3 N ALA A 83 ? N ALA A 83 O VAL A 90 ? O VAL A 90 # _atom_sites.entry_id 2YR3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 CYS 33 33 33 CYS CYS A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 CYS 59 59 59 CYS CYS A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 HIS 76 76 76 HIS HIS A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 TRP 95 95 95 TRP TRP A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 HIS 99 99 99 HIS HIS A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 9 ? ? -62.87 -175.57 2 1 ASN A 48 ? ? 34.41 44.17 3 1 ARG A 56 ? ? -91.11 46.10 4 1 ALA A 71 ? ? -51.51 105.47 5 1 HIS A 76 ? ? -51.14 100.64 6 1 LEU A 87 ? ? -86.06 -75.27 7 2 SER A 3 ? ? -56.76 99.57 8 2 GLU A 9 ? ? -67.75 -177.83 9 2 GLU A 25 ? ? -53.21 109.78 10 2 ASN A 48 ? ? 36.30 49.65 11 2 TYR A 54 ? ? -93.49 48.33 12 2 ARG A 56 ? ? -85.96 41.98 13 2 ALA A 71 ? ? -44.83 103.62 14 2 LEU A 87 ? ? -87.89 -75.32 15 3 GLU A 9 ? ? -49.19 174.87 16 3 GLU A 25 ? ? -54.50 102.95 17 3 PRO A 39 ? ? -69.73 -172.69 18 3 ASN A 48 ? ? 73.92 39.28 19 3 TYR A 54 ? ? -92.89 43.37 20 3 ALA A 71 ? ? -44.61 97.92 21 3 LEU A 87 ? ? -86.00 -74.29 22 4 VAL A 17 ? ? -35.73 153.25 23 4 ASP A 20 ? ? -37.32 148.68 24 4 VAL A 40 ? ? -37.07 128.62 25 4 ASN A 48 ? ? 38.81 50.42 26 4 TYR A 54 ? ? -84.73 37.32 27 4 ARG A 56 ? ? -79.77 45.28 28 4 ALA A 71 ? ? -45.09 103.87 29 4 LEU A 87 ? ? -83.03 -74.98 30 5 GLU A 9 ? ? -55.60 171.42 31 5 SER A 57 ? ? -34.56 143.73 32 5 VAL A 63 ? ? -68.47 89.87 33 5 ALA A 71 ? ? -48.40 103.09 34 5 HIS A 76 ? ? -39.61 147.67 35 5 LEU A 87 ? ? -85.56 -74.83 36 6 ASP A 20 ? ? -35.88 135.01 37 6 GLU A 25 ? ? -57.90 102.89 38 6 LEU A 31 ? ? -59.00 109.66 39 6 PRO A 39 ? ? -69.82 -175.90 40 6 ASN A 48 ? ? 48.85 25.66 41 6 TYR A 54 ? ? -88.30 41.14 42 6 ALA A 71 ? ? -46.75 102.33 43 6 LEU A 87 ? ? -106.76 -76.24 44 7 GLU A 9 ? ? -46.06 167.87 45 7 TYR A 54 ? ? -94.14 35.29 46 7 ALA A 71 ? ? -47.17 97.67 47 7 LEU A 87 ? ? -105.92 -76.16 48 8 SER A 6 ? ? -51.48 105.63 49 8 ASP A 20 ? ? -36.09 150.78 50 8 GLN A 27 ? ? -58.15 -179.82 51 8 ASN A 48 ? ? 40.84 27.79 52 8 TYR A 54 ? ? -83.67 40.84 53 8 ALA A 71 ? ? -49.36 100.51 54 8 LEU A 87 ? ? -88.59 -74.87 55 9 SER A 3 ? ? -174.21 144.68 56 9 ASP A 20 ? ? -35.86 143.42 57 9 ASN A 48 ? ? 72.89 34.24 58 9 TYR A 54 ? ? -103.59 44.96 59 9 ARG A 56 ? ? -83.17 49.32 60 9 ALA A 71 ? ? -51.94 97.47 61 9 PRO A 73 ? ? -69.76 1.56 62 9 LEU A 87 ? ? -97.27 -74.77 63 10 PRO A 39 ? ? -69.79 -177.92 64 10 TYR A 54 ? ? -94.07 37.69 65 10 ALA A 71 ? ? -45.80 102.49 66 10 HIS A 76 ? ? -34.18 109.74 67 10 LEU A 87 ? ? -82.57 -73.94 68 11 VAL A 17 ? ? -45.84 160.92 69 11 ASP A 20 ? ? -38.28 142.03 70 11 LEU A 31 ? ? -52.60 109.05 71 11 VAL A 40 ? ? -39.65 128.68 72 11 ARG A 56 ? ? -84.42 41.15 73 11 ALA A 71 ? ? -54.45 93.51 74 11 LEU A 87 ? ? -90.48 -74.37 75 12 SER A 3 ? ? -57.93 104.71 76 12 GLU A 9 ? ? -51.91 -177.88 77 12 ALA A 71 ? ? -53.78 95.44 78 12 HIS A 76 ? ? -48.90 151.01 79 12 LEU A 87 ? ? -85.40 -74.57 80 13 TYR A 54 ? ? -97.34 42.03 81 13 ALA A 71 ? ? -55.44 96.35 82 13 LEU A 87 ? ? -84.75 -74.54 83 14 SER A 3 ? ? -40.04 103.92 84 14 GLU A 9 ? ? -54.62 171.92 85 14 VAL A 17 ? ? -48.85 170.84 86 14 ASN A 48 ? ? 46.14 26.12 87 14 ALA A 61 ? ? 71.81 34.09 88 14 ALA A 71 ? ? -52.91 93.44 89 14 HIS A 76 ? ? -43.80 97.38 90 14 LEU A 87 ? ? -105.30 -75.81 91 15 TYR A 54 ? ? -107.13 46.99 92 15 ARG A 56 ? ? -95.82 55.46 93 15 ALA A 71 ? ? -55.81 93.53 94 15 PRO A 73 ? ? -69.72 2.26 95 15 LEU A 87 ? ? -104.03 -76.02 96 16 SER A 3 ? ? -82.92 43.77 97 16 VAL A 17 ? ? -45.56 168.55 98 16 TYR A 54 ? ? -83.93 42.23 99 16 ARG A 56 ? ? -80.41 46.30 100 16 ALA A 61 ? ? 39.68 48.59 101 16 ALA A 71 ? ? -59.03 94.98 102 16 HIS A 76 ? ? -38.94 103.82 103 16 LEU A 87 ? ? -89.15 -74.90 104 17 GLU A 9 ? ? -51.59 -178.89 105 17 VAL A 17 ? ? -49.19 164.77 106 17 ASN A 48 ? ? 34.62 44.98 107 17 TYR A 54 ? ? -82.16 45.95 108 17 ARG A 56 ? ? -83.92 40.51 109 17 ALA A 71 ? ? -51.33 100.98 110 17 LEU A 87 ? ? -104.99 -76.30 111 18 SER A 6 ? ? -172.18 144.07 112 18 GLU A 9 ? ? -56.36 171.92 113 18 ASP A 20 ? ? -38.12 155.37 114 18 ASN A 48 ? ? 35.12 42.89 115 18 TYR A 54 ? ? -84.50 31.65 116 18 ARG A 56 ? ? -81.55 42.15 117 18 ALA A 71 ? ? -45.43 94.43 118 18 HIS A 76 ? ? -40.28 98.00 119 18 LEU A 87 ? ? -93.97 -74.98 120 19 SER A 2 ? ? 72.78 32.05 121 19 SER A 5 ? ? -40.60 153.41 122 19 VAL A 17 ? ? -41.33 163.84 123 19 ALA A 71 ? ? -55.96 93.98 124 19 LEU A 87 ? ? -112.01 -75.53 125 20 GLU A 9 ? ? -52.85 179.70 126 20 VAL A 17 ? ? -47.69 156.72 127 20 GLN A 27 ? ? -55.41 -179.52 128 20 ASN A 48 ? ? 73.32 36.59 129 20 TYR A 54 ? ? -93.46 46.31 130 20 ARG A 56 ? ? -83.10 47.51 131 20 ALA A 71 ? ? -49.93 103.73 132 20 LEU A 87 ? ? -105.78 -75.99 #