HEADER PROTEIN BINDING 02-APR-07 2YRE TITLE SOLUTION STRUCTURE OF THE ZINC FINGER DOMAINS (1-87) FROM HUMAN F-BOX TITLE 2 ONLY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-BOX ONLY PROTEIN 30; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-TRAF DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FBXO30, FBX30; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050302-79; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZINC BINDING, E3 UBIQUITIN LIGASE, SCF, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN KEYWDS 4 BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,T.SUETAKE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YRE 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YRE 1 VERSN REVDAT 1 02-OCT-07 2YRE 0 JRNL AUTH T.NAGASHIMA,T.SUETAKE,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ZINC FINGER DOMAINS (1-87) FROM JRNL TITL 2 HUMAN F-BOX ONLY PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YRE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027038. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.29MM UNIFORMLY 13C, 15N REMARK 210 -LABELED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% NAN3, REMARK 210 0.05MM ZNCL2, 1MM IDA, 10% D2O, REMARK 210 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A -4 148.58 -171.31 REMARK 500 1 ARG A 17 32.49 -86.44 REMARK 500 1 PRO A 24 88.52 -69.73 REMARK 500 1 CYS A 53 126.30 -33.06 REMARK 500 1 GLU A 56 128.96 -34.16 REMARK 500 1 LEU A 61 -36.92 -39.76 REMARK 500 1 ASN A 62 42.43 -94.18 REMARK 500 1 GLU A 78 -35.91 -36.29 REMARK 500 1 ALA A 85 40.36 -82.52 REMARK 500 1 VAL A 87 41.28 35.62 REMARK 500 1 PRO A 90 3.45 -69.75 REMARK 500 1 SER A 91 114.10 -33.10 REMARK 500 2 MET A 1 124.11 -170.21 REMARK 500 2 LEU A 5 -177.93 -65.20 REMARK 500 2 VAL A 14 31.08 -94.99 REMARK 500 2 PRO A 24 8.13 -69.69 REMARK 500 2 ILE A 26 -75.29 -49.12 REMARK 500 2 PRO A 34 0.02 -69.75 REMARK 500 2 CYS A 53 132.84 -32.86 REMARK 500 2 GLU A 56 135.49 -37.00 REMARK 500 2 ASN A 62 44.41 -80.68 REMARK 500 2 PRO A 68 1.84 -69.74 REMARK 500 2 VAL A 87 42.38 33.09 REMARK 500 2 PRO A 90 99.89 -69.78 REMARK 500 3 ARG A 17 32.01 -83.75 REMARK 500 3 PRO A 24 8.13 -69.79 REMARK 500 3 ILE A 26 -71.98 -48.33 REMARK 500 3 SER A 43 -34.55 -34.95 REMARK 500 3 ASP A 47 -37.43 -33.53 REMARK 500 3 CYS A 53 129.28 -32.19 REMARK 500 3 ASN A 62 46.19 -88.64 REMARK 500 3 VAL A 87 47.29 31.80 REMARK 500 3 PRO A 90 90.43 -69.82 REMARK 500 4 SER A -5 118.38 -167.66 REMARK 500 4 SER A -4 118.62 -172.02 REMARK 500 4 ARG A 17 36.47 -82.77 REMARK 500 4 PRO A 24 10.20 -69.70 REMARK 500 4 ILE A 26 -75.42 -54.33 REMARK 500 4 CYS A 53 127.69 -34.01 REMARK 500 4 GLU A 56 133.00 -35.03 REMARK 500 4 CYS A 60 137.46 -39.90 REMARK 500 4 ASN A 62 39.75 -93.39 REMARK 500 4 PHE A 69 150.21 -45.90 REMARK 500 4 VAL A 87 44.93 31.58 REMARK 500 5 SER A 15 150.01 -48.87 REMARK 500 5 ARG A 17 38.24 -85.83 REMARK 500 5 MET A 19 40.03 -100.77 REMARK 500 5 PRO A 24 85.14 -69.72 REMARK 500 5 CYS A 33 134.48 -39.46 REMARK 500 5 PRO A 34 3.12 -69.77 REMARK 500 REMARK 500 THIS ENTRY HAS 205 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 7 ND1 REMARK 620 2 CYS A 10 SG 108.6 REMARK 620 3 CYS A 28 SG 108.9 110.7 REMARK 620 4 CYS A 44 SG 106.5 106.7 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 CYS A 13 SG 109.1 REMARK 620 3 CYS A 18 SG 105.1 103.6 REMARK 620 4 HIS A 42 NE2 108.0 116.2 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 33 SG REMARK 620 2 CYS A 37 SG 104.8 REMARK 620 3 HIS A 49 NE2 116.2 114.2 REMARK 620 4 CYS A 53 SG 106.9 101.9 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 60 SG REMARK 620 2 CYS A 67 SG 116.7 REMARK 620 3 HIS A 79 NE2 107.7 109.0 REMARK 620 4 CYS A 83 SG 107.2 108.5 107.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002010846.1 RELATED DB: TARGETDB DBREF 2YRE A 1 87 UNP Q8TB52 FBX30_HUMAN 1 87 SEQADV 2YRE GLY A -6 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE SER A -5 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE SER A -4 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE GLY A -3 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE SER A -2 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE SER A -1 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE GLY A 0 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE SER A 88 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE GLY A 89 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE PRO A 90 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE SER A 91 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE SER A 92 UNP Q8TB52 EXPRESSION TAG SEQADV 2YRE GLY A 93 UNP Q8TB52 EXPRESSION TAG SEQRES 1 A 100 GLY SER SER GLY SER SER GLY MET GLU GLU GLU LEU GLN SEQRES 2 A 100 HIS SER HIS CYS VAL ASN CYS VAL SER ARG ARG CYS MET SEQRES 3 A 100 THR ARG PRO GLU PRO GLY ILE SER CYS ASP LEU ILE GLY SEQRES 4 A 100 CYS PRO LEU VAL CYS GLY ALA VAL PHE HIS SER CYS LYS SEQRES 5 A 100 ALA ASP GLU HIS ARG LEU LEU CYS PRO PHE GLU ARG VAL SEQRES 6 A 100 PRO CYS LEU ASN SER ASP PHE GLY CYS PRO PHE THR MET SEQRES 7 A 100 ALA ARG ASN LYS VAL ALA GLU HIS LEU GLU MET CYS PRO SEQRES 8 A 100 ALA SER VAL SER GLY PRO SER SER GLY HET ZN A 401 1 HET ZN A 501 1 HET ZN A 601 1 HET ZN A 701 1 HETNAM ZN ZINC ION FORMUL 2 ZN 4(ZN 2+) HELIX 1 1 HIS A 9 CYS A 13 5 5 HELIX 2 2 SER A 43 CYS A 53 1 11 HELIX 3 3 LYS A 75 MET A 82 1 8 HELIX 4 4 CYS A 83 VAL A 87 5 5 SHEET 1 A 2 LEU A 30 GLY A 32 0 SHEET 2 A 2 VAL A 40 HIS A 42 -1 O PHE A 41 N ILE A 31 SHEET 1 B 2 ARG A 57 PRO A 59 0 SHEET 2 B 2 THR A 70 ALA A 72 -1 O MET A 71 N VAL A 58 LINK ND1 HIS A 7 ZN ZN A 401 1555 1555 2.05 LINK NE2 HIS A 9 ZN ZN A 501 1555 1555 2.05 LINK SG CYS A 10 ZN ZN A 401 1555 1555 2.25 LINK SG CYS A 13 ZN ZN A 501 1555 1555 2.30 LINK SG CYS A 18 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 28 ZN ZN A 401 1555 1555 2.25 LINK SG CYS A 33 ZN ZN A 601 1555 1555 2.26 LINK SG CYS A 37 ZN ZN A 601 1555 1555 2.35 LINK NE2 HIS A 42 ZN ZN A 501 1555 1555 2.06 LINK SG CYS A 44 ZN ZN A 401 1555 1555 2.31 LINK NE2 HIS A 49 ZN ZN A 601 1555 1555 2.04 LINK SG CYS A 53 ZN ZN A 601 1555 1555 2.35 LINK SG CYS A 60 ZN ZN A 701 1555 1555 2.28 LINK SG CYS A 67 ZN ZN A 701 1555 1555 2.25 LINK NE2 HIS A 79 ZN ZN A 701 1555 1555 2.05 LINK SG CYS A 83 ZN ZN A 701 1555 1555 2.30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1