HEADER LIGASE 02-APR-07 2YRG TITLE SOLUTION STRUCTURE OF THE B-BOX DOMAIN FROM TRIPARTITE MOTIF- TITLE 2 CONTAINING PROTEIN 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPARTITE MOTIF-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B-BOX DOMAIN; COMPND 5 SYNONYM: RING FINGER PROTEIN 88; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM5; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P070115-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS B-BOX DOMAIN, TRIPARTITE MOTIF-CONTAINING PROTEIN 5, RING FINGER KEYWDS 2 PROTEIN 88, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.R.QIN,F.HAYAHSI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YRG 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YRG 1 VERSN REVDAT 1 02-OCT-07 2YRG 0 JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE B-BOX DOMAIN FROM TRIPARTITE JRNL TITL 2 MOTIF-CONTAINING PROTEIN 5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YRG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027040. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL (PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 0.05MM ZNCL2, 1MM IDA; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY, REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY; REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 12 102.71 -56.08 REMARK 500 1 GLN A 43 -17.86 -49.65 REMARK 500 1 PRO A 56 80.34 -69.78 REMARK 500 2 GLN A 43 -19.96 -47.32 REMARK 500 2 PRO A 52 86.52 -69.74 REMARK 500 3 PRO A 52 79.82 -69.68 REMARK 500 4 LYS A 13 104.36 -54.52 REMARK 500 4 GLN A 43 -19.18 -49.76 REMARK 500 4 PRO A 52 79.93 -69.70 REMARK 500 4 PRO A 56 -177.78 -69.76 REMARK 500 5 GLN A 43 -9.18 -59.71 REMARK 500 5 PRO A 52 80.02 -69.82 REMARK 500 5 PRO A 56 96.93 -69.76 REMARK 500 6 SER A 3 105.02 -52.04 REMARK 500 6 PRO A 52 80.64 -69.77 REMARK 500 7 LYS A 13 106.29 -52.77 REMARK 500 7 GLN A 43 -29.49 -39.26 REMARK 500 7 PRO A 52 89.17 -69.77 REMARK 500 8 PRO A 9 3.09 -69.74 REMARK 500 8 GLN A 43 -18.31 -49.75 REMARK 500 8 PRO A 52 91.06 -69.74 REMARK 500 8 PRO A 56 11.76 -69.77 REMARK 500 9 LYS A 13 106.44 -57.37 REMARK 500 9 PRO A 52 80.51 -69.77 REMARK 500 10 GLU A 30 -39.59 -39.83 REMARK 500 10 GLN A 43 -18.69 -48.22 REMARK 500 11 GLN A 12 102.11 -58.62 REMARK 500 11 PRO A 52 80.13 -69.78 REMARK 500 13 PRO A 52 80.33 -69.81 REMARK 500 14 GLN A 43 -19.01 -48.54 REMARK 500 14 PRO A 52 80.02 -69.83 REMARK 500 15 PRO A 9 2.97 -69.81 REMARK 500 15 PRO A 52 82.35 -69.76 REMARK 500 16 PRO A 52 79.89 -69.76 REMARK 500 17 PRO A 9 4.34 -69.73 REMARK 500 17 LYS A 13 107.48 -55.84 REMARK 500 17 GLN A 43 -32.20 -35.25 REMARK 500 17 PRO A 52 82.10 -69.79 REMARK 500 18 GLN A 12 103.76 -54.62 REMARK 500 18 PRO A 52 90.11 -69.77 REMARK 500 19 GLN A 12 107.75 -59.47 REMARK 500 19 PRO A 52 79.76 -69.74 REMARK 500 19 SER A 58 174.69 -59.99 REMARK 500 20 GLU A 10 32.51 33.60 REMARK 500 20 PRO A 52 98.45 -69.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 17 SG REMARK 620 2 HIS A 20 ND1 116.3 REMARK 620 3 CYS A 36 SG 110.4 107.0 REMARK 620 4 CYS A 39 SG 110.9 108.3 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 28 SG REMARK 620 2 ASP A 31 OD2 111.1 REMARK 620 3 HIS A 45 ND1 118.2 99.1 REMARK 620 4 HIS A 48 ND1 114.1 102.9 109.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSB001014687.1 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS A CONFLICT 130 LEU TO PRO IN REF.2 BAB55218 DBREF 2YRG A 8 53 UNP Q9C035 TRIM5_HUMAN 86 131 SEQADV 2YRG GLY A 1 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG SER A 2 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG SER A 3 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG GLY A 4 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG SER A 5 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG SER A 6 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG GLY A 7 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG PRO A 52 UNP Q9C035 LEU 130 SEE REMARK 999 SEQADV 2YRG SER A 54 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG GLY A 55 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG PRO A 56 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG SER A 57 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG SER A 58 UNP Q9C035 EXPRESSION TAG SEQADV 2YRG GLY A 59 UNP Q9C035 EXPRESSION TAG SEQRES 1 A 59 GLY SER SER GLY SER SER GLY SER PRO GLU GLY GLN LYS SEQRES 2 A 59 VAL ASP HIS CYS ALA ARG HIS GLY GLU LYS LEU LEU LEU SEQRES 3 A 59 PHE CYS GLN GLU ASP GLY LYS VAL ILE CYS TRP LEU CYS SEQRES 4 A 59 GLU ARG SER GLN GLU HIS ARG GLY HIS HIS THR PHE PRO SEQRES 5 A 59 THR SER GLY PRO SER SER GLY HET ZN A 201 1 HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 CYS A 36 ARG A 41 1 6 SHEET 1 A 3 VAL A 34 ILE A 35 0 SHEET 2 A 3 LEU A 26 CYS A 28 -1 N LEU A 26 O ILE A 35 SHEET 3 A 3 THR A 50 PRO A 52 -1 O PHE A 51 N PHE A 27 LINK SG CYS A 17 ZN ZN A 201 1555 1555 2.34 LINK ND1 HIS A 20 ZN ZN A 201 1555 1555 2.02 LINK SG CYS A 28 ZN ZN A 401 1555 1555 2.24 LINK OD2 ASP A 31 ZN ZN A 401 1555 1555 2.06 LINK SG CYS A 36 ZN ZN A 201 1555 1555 2.32 LINK SG CYS A 39 ZN ZN A 201 1555 1555 2.34 LINK ND1 HIS A 45 ZN ZN A 401 1555 1555 2.08 LINK ND1 HIS A 48 ZN ZN A 401 1555 1555 2.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1