data_2YRP # _entry.id 2YRP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YRP pdb_00002yrp 10.2210/pdb2yrp/pdb RCSB RCSB027049 ? ? WWPDB D_1000027049 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002102313.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YRP _pdbx_database_status.recvd_initial_deposition_date 2007-04-02 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Koshiba, S.' 2 'Watanabe, S.' 3 'Harada, T.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the TIG domain from Human Nuclear factor of activated T-cells, cytoplasmic 4' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Watanabe, S.' 3 ? primary 'Harada, T.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Nuclear factor of activated T-cells, cytoplasmic 4' _entity.formula_weight 12671.150 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'TIG domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NF-ATc4, NFATc4, T cell transcription factor NFAT3, NF-AT3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGLPQVEAYSPSACSVRGGEELVLTGSNFLPDSKVVFIERGPDGKLQWEEEATVNRLQSNEVTLTLTVPEYSNKR VSRPVQVYFYVSNGRRKRSPTQSFRFLPVICKEE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGLPQVEAYSPSACSVRGGEELVLTGSNFLPDSKVVFIERGPDGKLQWEEEATVNRLQSNEVTLTLTVPEYSNKR VSRPVQVYFYVSNGRRKRSPTQSFRFLPVICKEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002102313.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LEU n 1 9 PRO n 1 10 GLN n 1 11 VAL n 1 12 GLU n 1 13 ALA n 1 14 TYR n 1 15 SER n 1 16 PRO n 1 17 SER n 1 18 ALA n 1 19 CYS n 1 20 SER n 1 21 VAL n 1 22 ARG n 1 23 GLY n 1 24 GLY n 1 25 GLU n 1 26 GLU n 1 27 LEU n 1 28 VAL n 1 29 LEU n 1 30 THR n 1 31 GLY n 1 32 SER n 1 33 ASN n 1 34 PHE n 1 35 LEU n 1 36 PRO n 1 37 ASP n 1 38 SER n 1 39 LYS n 1 40 VAL n 1 41 VAL n 1 42 PHE n 1 43 ILE n 1 44 GLU n 1 45 ARG n 1 46 GLY n 1 47 PRO n 1 48 ASP n 1 49 GLY n 1 50 LYS n 1 51 LEU n 1 52 GLN n 1 53 TRP n 1 54 GLU n 1 55 GLU n 1 56 GLU n 1 57 ALA n 1 58 THR n 1 59 VAL n 1 60 ASN n 1 61 ARG n 1 62 LEU n 1 63 GLN n 1 64 SER n 1 65 ASN n 1 66 GLU n 1 67 VAL n 1 68 THR n 1 69 LEU n 1 70 THR n 1 71 LEU n 1 72 THR n 1 73 VAL n 1 74 PRO n 1 75 GLU n 1 76 TYR n 1 77 SER n 1 78 ASN n 1 79 LYS n 1 80 ARG n 1 81 VAL n 1 82 SER n 1 83 ARG n 1 84 PRO n 1 85 VAL n 1 86 GLN n 1 87 VAL n 1 88 TYR n 1 89 PHE n 1 90 TYR n 1 91 VAL n 1 92 SER n 1 93 ASN n 1 94 GLY n 1 95 ARG n 1 96 ARG n 1 97 LYS n 1 98 ARG n 1 99 SER n 1 100 PRO n 1 101 THR n 1 102 GLN n 1 103 SER n 1 104 PHE n 1 105 ARG n 1 106 PHE n 1 107 LEU n 1 108 PRO n 1 109 VAL n 1 110 ILE n 1 111 CYS n 1 112 LYS n 1 113 GLU n 1 114 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene NFATC4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P061030-04 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NFAC4_HUMAN _struct_ref.pdbx_db_accession Q14934 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LPQVEAYSPSACSVRGGEELVLTGSNFLPDSKVVFIERGPDGKLQWEEEATVNRLQSNEVTLTLTVPEYSNKRVSRPVQV YFYVSNGRRKRSPTQSFRFLPVICKEE ; _struct_ref.pdbx_align_begin 585 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YRP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q14934 _struct_ref_seq.db_align_beg 585 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 691 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 114 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YRP GLY A 1 ? UNP Q14934 ? ? 'expression tag' 1 1 1 2YRP SER A 2 ? UNP Q14934 ? ? 'expression tag' 2 2 1 2YRP SER A 3 ? UNP Q14934 ? ? 'expression tag' 3 3 1 2YRP GLY A 4 ? UNP Q14934 ? ? 'expression tag' 4 4 1 2YRP SER A 5 ? UNP Q14934 ? ? 'expression tag' 5 5 1 2YRP SER A 6 ? UNP Q14934 ? ? 'expression tag' 6 6 1 2YRP GLY A 7 ? UNP Q14934 ? ? 'expression tag' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.94mM TIG domain U-15N,13C; 20mM d-Tris-HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE II' _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2YRP _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2YRP _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2YRP _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection TopSpin 1.3 Bruker 1 processing NMRPipe 20060524 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9823 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2YRP _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2YRP _struct.title 'Solution structure of the TIG domain from Human Nuclear factor of activated T-cells, cytoplasmic 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YRP _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text ;beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, IMMUNE SYSTEM ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 1 -0.07 2 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 2 0.07 3 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 3 -0.07 4 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 4 0.01 5 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 5 -0.07 6 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 6 -0.10 7 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 7 -0.03 8 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 8 0.03 9 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 9 -0.04 10 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 10 0.03 11 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 11 -0.02 12 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 12 -0.03 13 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 13 -0.02 14 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 14 0.02 15 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 15 0.06 16 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 16 -0.04 17 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 17 0.00 18 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 18 -0.04 19 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 19 -0.09 20 SER 15 A . ? SER 15 A PRO 16 A ? PRO 16 A 20 -0.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 10 ? SER A 15 ? GLN A 10 SER A 15 A 2 GLU A 26 ? SER A 32 ? GLU A 26 SER A 32 A 3 THR A 68 ? THR A 72 ? THR A 68 THR A 72 B 1 CYS A 19 ? SER A 20 ? CYS A 19 SER A 20 B 2 GLN A 102 ? LEU A 107 ? GLN A 102 LEU A 107 B 3 VAL A 85 ? SER A 92 ? VAL A 85 SER A 92 B 4 LYS A 39 ? ILE A 43 ? LYS A 39 ILE A 43 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 13 ? N ALA A 13 O THR A 30 ? O THR A 30 A 2 3 N LEU A 27 ? N LEU A 27 O LEU A 71 ? O LEU A 71 B 1 2 N CYS A 19 ? N CYS A 19 O LEU A 107 ? O LEU A 107 B 2 3 O PHE A 106 ? O PHE A 106 N VAL A 85 ? N VAL A 85 B 3 4 O SER A 92 ? O SER A 92 N LYS A 39 ? N LYS A 39 # _database_PDB_matrix.entry_id 2YRP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YRP _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 CYS 111 111 111 CYS CYS A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 GLU 114 114 114 GLU GLU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 47 ? ? -69.80 2.71 2 1 VAL A 73 ? ? -39.50 122.41 3 2 SER A 38 ? ? -43.64 164.93 4 2 ARG A 95 ? ? -120.94 -54.06 5 2 ILE A 110 ? ? -35.29 126.66 6 2 CYS A 111 ? ? -38.67 137.15 7 3 SER A 3 ? ? -120.09 -52.63 8 3 SER A 38 ? ? -40.02 160.79 9 3 THR A 58 ? ? -59.38 96.21 10 4 SER A 38 ? ? -51.27 170.12 11 4 ILE A 110 ? ? -34.11 125.49 12 4 GLU A 113 ? ? -35.59 114.56 13 5 SER A 5 ? ? -57.07 109.72 14 5 SER A 6 ? ? 42.60 27.59 15 5 SER A 17 ? ? -39.99 -33.36 16 5 ASN A 33 ? ? 71.99 46.49 17 5 ARG A 80 ? ? -34.52 -37.24 18 5 ARG A 95 ? ? -106.50 -73.66 19 5 ILE A 110 ? ? -33.67 125.67 20 6 SER A 2 ? ? -98.52 41.29 21 6 SER A 3 ? ? -102.84 79.24 22 6 SER A 38 ? ? -41.48 155.11 23 6 VAL A 73 ? ? -38.21 123.51 24 6 ARG A 80 ? ? -99.63 43.07 25 6 LYS A 97 ? ? -60.72 89.55 26 6 ILE A 110 ? ? -35.59 124.60 27 7 ARG A 22 ? ? -98.86 51.72 28 7 VAL A 81 ? ? -33.81 143.99 29 7 ARG A 95 ? ? -130.07 -43.19 30 7 THR A 101 ? ? -48.34 162.03 31 8 SER A 2 ? ? -67.47 88.84 32 8 SER A 3 ? ? -65.09 77.91 33 8 SER A 38 ? ? -45.70 162.47 34 8 VAL A 73 ? ? -34.66 135.97 35 8 ARG A 80 ? ? -35.39 -36.62 36 8 VAL A 81 ? ? -36.79 144.54 37 8 ILE A 110 ? ? -33.72 125.24 38 9 SER A 6 ? ? -105.75 44.71 39 9 SER A 38 ? ? -44.45 164.71 40 9 PRO A 74 ? ? -69.71 -173.76 41 9 TYR A 76 ? ? -45.91 155.53 42 9 VAL A 81 ? ? -35.60 135.58 43 9 ARG A 95 ? ? -107.19 -68.64 44 9 THR A 101 ? ? -45.34 163.05 45 10 SER A 6 ? ? -110.35 65.36 46 10 ASN A 33 ? ? 73.52 43.60 47 10 PRO A 47 ? ? -69.74 1.92 48 10 ARG A 95 ? ? -132.54 -47.23 49 10 GLU A 113 ? ? -87.07 41.95 50 11 PRO A 47 ? ? -69.81 2.08 51 12 SER A 6 ? ? -101.53 46.79 52 12 ASN A 78 ? ? -103.00 53.93 53 12 ARG A 95 ? ? -128.54 -56.99 54 12 ILE A 110 ? ? -36.06 124.82 55 12 CYS A 111 ? ? -81.54 44.53 56 13 SER A 6 ? ? -52.57 99.61 57 13 ASN A 33 ? ? 70.91 48.92 58 13 SER A 38 ? ? -59.94 171.59 59 13 PRO A 47 ? ? -69.70 2.28 60 13 SER A 64 ? ? -49.52 154.35 61 13 VAL A 73 ? ? -37.84 130.75 62 14 SER A 6 ? ? -163.24 118.74 63 14 ARG A 80 ? ? -35.96 -39.00 64 14 VAL A 81 ? ? -37.02 130.12 65 15 VAL A 21 ? ? -39.99 -37.17 66 15 SER A 38 ? ? -39.67 153.39 67 15 PRO A 47 ? ? -69.82 1.52 68 15 THR A 58 ? ? -69.41 97.89 69 15 TYR A 76 ? ? -47.76 154.50 70 15 ASN A 78 ? ? -84.27 43.26 71 15 LYS A 79 ? ? -39.99 -38.94 72 15 ARG A 80 ? ? -35.75 -39.17 73 15 ILE A 110 ? ? 31.78 50.09 74 16 ALA A 18 ? ? -170.06 129.30 75 16 VAL A 21 ? ? -38.16 -38.83 76 16 SER A 38 ? ? -48.14 172.66 77 16 VAL A 73 ? ? -38.73 123.73 78 16 PRO A 74 ? ? -69.74 -171.48 79 16 SER A 77 ? ? -90.64 33.59 80 16 ASN A 78 ? ? -171.09 124.84 81 16 ARG A 95 ? ? -120.76 -60.33 82 17 SER A 5 ? ? -50.83 101.38 83 17 SER A 38 ? ? -50.68 175.82 84 17 THR A 58 ? ? -61.79 95.91 85 17 ARG A 80 ? ? -37.57 -39.99 86 17 VAL A 81 ? ? -35.68 134.97 87 17 GLU A 113 ? ? -171.40 139.07 88 18 PRO A 36 ? ? -69.82 1.26 89 18 SER A 38 ? ? -48.93 153.68 90 18 THR A 58 ? ? -61.90 96.73 91 18 ARG A 61 ? ? -98.47 35.77 92 18 TYR A 76 ? ? -46.44 158.85 93 18 ARG A 80 ? ? -35.93 -38.33 94 18 THR A 101 ? ? -44.50 162.85 95 19 SER A 38 ? ? -41.09 162.95 96 19 VAL A 81 ? ? -33.81 128.62 97 19 THR A 101 ? ? -43.18 156.28 98 19 ILE A 110 ? ? -33.86 125.79 99 20 SER A 6 ? ? -89.36 41.26 100 20 PRO A 36 ? ? -69.76 1.73 101 20 SER A 38 ? ? -33.99 142.59 102 20 PRO A 47 ? ? -69.73 2.89 103 20 THR A 58 ? ? -69.11 92.28 104 20 ASN A 65 ? ? -133.97 -75.50 105 20 GLU A 66 ? ? -134.97 -57.01 #