HEADER SIGNALING PROTEIN 03-APR-07 2YRY TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF PLECKSTRIN HOMOLOGY DOMAIN- TITLE 2 CONTAINING FAMILY A MEMBER 6 FROM HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 SYNONYM: PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN 3, PEPP-3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLEKHA6; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060515-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PH DOMAIN, PEPP-3, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YRY 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YRY 1 VERSN REVDAT 1 09-OCT-07 2YRY 0 JRNL AUTH H.LI,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF PLECKSTRIN HOMOLOGY JRNL TITL 2 DOMAIN-CONTAINING FAMILY A MEMBER 6 FROM HUMAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YRY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027058. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.21MM PH DOMAIN U-15N,13C; 20MM REMARK 210 D-TRIS-HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 9 143.01 -173.92 REMARK 500 1 ARG A 49 29.07 45.64 REMARK 500 1 ALA A 74 138.55 -171.65 REMARK 500 1 PRO A 78 0.28 -69.78 REMARK 500 1 VAL A 95 -65.81 -100.34 REMARK 500 1 ARG A 96 -178.42 -172.14 REMARK 500 1 ARG A 120 144.45 -38.51 REMARK 500 2 ARG A 49 25.57 46.07 REMARK 500 2 GLU A 57 41.14 -83.37 REMARK 500 2 PRO A 67 96.81 -69.77 REMARK 500 2 VAL A 76 -176.68 -57.41 REMARK 500 3 LYS A 37 97.78 -66.91 REMARK 500 3 ARG A 49 29.14 46.83 REMARK 500 3 VAL A 73 149.20 -36.56 REMARK 500 3 ALA A 74 127.16 -175.02 REMARK 500 3 PRO A 78 2.68 -69.71 REMARK 500 3 ASN A 81 38.89 -86.26 REMARK 500 3 ALA A 93 93.07 -33.40 REMARK 500 3 VAL A 95 -75.14 -121.28 REMARK 500 3 ARG A 96 -174.98 -171.83 REMARK 500 3 ARG A 120 158.51 -39.17 REMARK 500 4 HIS A 12 -56.79 -120.86 REMARK 500 4 ALA A 32 -74.95 -70.41 REMARK 500 4 LYS A 37 54.09 32.73 REMARK 500 4 ARG A 49 27.96 45.70 REMARK 500 4 VAL A 76 153.82 -46.54 REMARK 500 4 PRO A 78 2.14 -69.79 REMARK 500 4 VAL A 95 -70.30 -108.88 REMARK 500 4 ARG A 120 129.42 -34.55 REMARK 500 5 ARG A 10 146.02 -35.54 REMARK 500 5 ASN A 19 41.16 -97.55 REMARK 500 5 ALA A 74 130.68 -170.99 REMARK 500 5 ALA A 75 167.62 -43.73 REMARK 500 5 PRO A 78 0.41 -69.72 REMARK 500 5 ASN A 81 48.47 -88.18 REMARK 500 5 VAL A 95 -74.13 -91.93 REMARK 500 6 SER A 11 116.93 -167.05 REMARK 500 6 ARG A 49 27.40 45.73 REMARK 500 6 LEU A 69 -9.90 -58.93 REMARK 500 6 ARG A 72 76.04 -116.00 REMARK 500 6 ASN A 81 47.37 -83.89 REMARK 500 6 ARG A 84 178.87 -50.05 REMARK 500 6 ALA A 93 49.74 74.77 REMARK 500 6 ARG A 120 159.24 -41.15 REMARK 500 7 GLN A 38 133.06 -174.26 REMARK 500 7 ALA A 74 133.15 -174.76 REMARK 500 7 ALA A 75 164.00 -42.31 REMARK 500 7 PRO A 78 1.54 -69.74 REMARK 500 7 ARG A 84 -178.02 -63.33 REMARK 500 7 LYS A 85 -60.50 -127.04 REMARK 500 REMARK 500 THIS ENTRY HAS 174 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000946.2 RELATED DB: TARGETDB DBREF 2YRY A 8 122 UNP Q9Y2H5 PKHA6_HUMAN 46 160 SEQADV 2YRY GLY A 1 UNP Q9Y2H5 EXPRESSION TAG SEQADV 2YRY SER A 2 UNP Q9Y2H5 EXPRESSION TAG SEQADV 2YRY SER A 3 UNP Q9Y2H5 EXPRESSION TAG SEQADV 2YRY GLY A 4 UNP Q9Y2H5 EXPRESSION TAG SEQADV 2YRY SER A 5 UNP Q9Y2H5 EXPRESSION TAG SEQADV 2YRY SER A 6 UNP Q9Y2H5 EXPRESSION TAG SEQADV 2YRY GLY A 7 UNP Q9Y2H5 EXPRESSION TAG SEQRES 1 A 122 GLY SER SER GLY SER SER GLY GLY LYS ARG SER HIS SER SEQRES 2 A 122 MET LYS ARG ASN PRO ASN ALA PRO VAL THR LYS ALA GLY SEQRES 3 A 122 TRP LEU PHE LYS GLN ALA SER SER GLY VAL LYS GLN TRP SEQRES 4 A 122 ASN LYS ARG TRP PHE VAL LEU VAL ASP ARG CYS LEU PHE SEQRES 5 A 122 TYR TYR LYS ASP GLU LYS GLU GLU SER ILE LEU GLY SER SEQRES 6 A 122 ILE PRO LEU LEU SER PHE ARG VAL ALA ALA VAL GLN PRO SEQRES 7 A 122 SER ASP ASN ILE SER ARG LYS HIS THR PHE LYS ALA GLU SEQRES 8 A 122 HIS ALA GLY VAL ARG THR TYR PHE PHE SER ALA GLU SER SEQRES 9 A 122 PRO GLU GLU GLN GLU ALA TRP ILE GLN ALA MET GLY GLU SEQRES 10 A 122 ALA ALA ARG VAL GLN HELIX 1 1 PRO A 105 ALA A 119 1 15 SHEET 1 A 7 GLY A 64 PRO A 67 0 SHEET 2 A 7 CYS A 50 TYR A 54 -1 N LEU A 51 O ILE A 66 SHEET 3 A 7 TRP A 39 VAL A 47 -1 N VAL A 45 O PHE A 52 SHEET 4 A 7 VAL A 22 GLN A 31 -1 N LYS A 24 O LEU A 46 SHEET 5 A 7 THR A 97 SER A 101 -1 O SER A 101 N PHE A 29 SHEET 6 A 7 THR A 87 GLU A 91 -1 N PHE A 88 O PHE A 100 SHEET 7 A 7 ARG A 72 ALA A 75 -1 N ALA A 74 O LYS A 89 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1