HEADER SIGNALING PROTEIN 03-APR-07 2YS3 TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF KINDLIN-3 FROM HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNC-112-RELATED PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN, UNP RESIDUES 349-478; COMPND 5 SYNONYM: KINDLIN-3, MIG2-LIKE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: URP2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060904-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PH DOMAIN, UNC-112-RELATED PROTEIN 2, KINDLIN-3, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YS3 1 REMARK SEQADV SHEET REVDAT 2 24-FEB-09 2YS3 1 VERSN REVDAT 1 09-OCT-07 2YS3 0 JRNL AUTH H.LI,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF KINDLIN-3 FROM HUMAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YS3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027063. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18MM PH DOMAIN U-15N,13C; 20MM REMARK 210 D-TRIS-HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 13 139.80 -172.61 REMARK 500 1 ARG A 21 36.86 -96.95 REMARK 500 1 GLN A 46 -34.35 -34.27 REMARK 500 1 GLN A 55 111.18 -165.30 REMARK 500 1 LYS A 60 92.32 -51.04 REMARK 500 1 CYS A 62 174.98 -59.67 REMARK 500 1 SER A 71 -38.34 -38.29 REMARK 500 1 GLN A 73 45.12 38.25 REMARK 500 1 ARG A 114 174.31 -56.86 REMARK 500 1 ARG A 136 162.11 -42.38 REMARK 500 2 PRO A 9 96.51 -69.76 REMARK 500 2 ASP A 13 139.86 -174.71 REMARK 500 2 LEU A 23 74.00 -67.67 REMARK 500 2 GLU A 37 -71.02 -33.13 REMARK 500 2 LEU A 59 -33.14 -36.40 REMARK 500 2 CYS A 62 -176.75 -67.48 REMARK 500 2 MET A 104 -70.64 -46.08 REMARK 500 2 ARG A 114 155.40 -48.59 REMARK 500 3 LYS A 26 136.60 -37.17 REMARK 500 3 GLU A 37 -71.68 -32.13 REMARK 500 3 GLN A 46 -33.25 -34.09 REMARK 500 3 MET A 87 164.28 -41.94 REMARK 500 3 ARG A 136 -175.38 -51.70 REMARK 500 4 ASP A 13 138.88 -171.94 REMARK 500 4 ARG A 21 46.30 -85.29 REMARK 500 4 LEU A 25 109.82 -40.80 REMARK 500 4 GLU A 37 -72.86 -32.49 REMARK 500 4 GLN A 55 105.01 -173.87 REMARK 500 4 LYS A 60 105.55 -56.51 REMARK 500 4 VAL A 70 -38.28 -36.06 REMARK 500 4 GLN A 73 54.55 36.90 REMARK 500 4 MET A 87 129.17 -172.44 REMARK 500 4 ARG A 114 153.35 -40.43 REMARK 500 5 ASP A 13 142.73 -174.00 REMARK 500 5 PRO A 20 -170.07 -69.73 REMARK 500 5 LYS A 26 121.29 -37.61 REMARK 500 5 GLU A 37 -70.67 -31.57 REMARK 500 5 LYS A 60 90.01 -68.06 REMARK 500 5 CYS A 62 -175.52 -51.97 REMARK 500 5 GLN A 73 39.85 39.36 REMARK 500 5 ARG A 136 -176.15 -55.70 REMARK 500 6 SER A 3 173.92 -54.08 REMARK 500 6 ASP A 13 141.47 -174.38 REMARK 500 6 TYR A 28 51.51 36.50 REMARK 500 6 GLU A 37 -71.52 -31.11 REMARK 500 6 LEU A 59 -36.42 -34.69 REMARK 500 6 CYS A 62 178.20 -57.83 REMARK 500 6 ASP A 67 35.82 -95.57 REMARK 500 6 GLN A 73 51.37 36.71 REMARK 500 6 ARG A 114 162.62 -45.33 REMARK 500 REMARK 500 THIS ENTRY HAS 196 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003005630.1 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS BASED ON REFERENCE 2 IN THE REMARK 999 DATABASE, URP2_HUMAN. DBREF 2YS3 A 8 137 UNP Q86UX7 URP2_HUMAN 349 478 SEQADV 2YS3 GLY A 1 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 SER A 2 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 SER A 3 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 GLY A 4 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 SER A 5 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 SER A 6 UNP Q86UX7 EXPRESSION TAG SEQADV 2YS3 GLY A 7 UNP Q86UX7 EXPRESSION TAG SEQRES 1 A 137 GLY SER SER GLY SER SER GLY ILE PRO GLU LEU LYS ASP SEQRES 2 A 137 HIS LEU ARG ILE PHE ARG PRO ARG LYS LEU THR LEU LYS SEQRES 3 A 137 GLY TYR ARG GLN HIS TRP VAL VAL PHE LYS GLU THR THR SEQRES 4 A 137 LEU SER TYR TYR LYS SER GLN ASP GLU ALA PRO GLY ASP SEQRES 5 A 137 PRO ILE GLN GLN LEU ASN LEU LYS GLY CYS GLU VAL VAL SEQRES 6 A 137 PRO ASP VAL ASN VAL SER GLY GLN LYS PHE CYS ILE LYS SEQRES 7 A 137 LEU LEU VAL PRO SER PRO GLU GLY MET SER GLU ILE TYR SEQRES 8 A 137 LEU ARG CYS GLN ASP GLU GLN GLN TYR ALA ARG TRP MET SEQRES 9 A 137 ALA GLY CYS ARG LEU ALA SER LYS GLY ARG THR MET ALA SEQRES 10 A 137 ASP SER SER TYR THR SER GLU VAL GLN ALA ILE LEU ALA SEQRES 11 A 137 PHE LEU SER LEU GLN ARG THR HELIX 1 2 GLU A 97 SER A 111 1 15 HELIX 2 3 SER A 120 GLN A 135 1 16 SHEET 1 A 4 GLU A 10 LYS A 12 0 SHEET 2 A 4 GLN A 55 LEU A 57 -1 SHEET 3 A 4 TRP A 32 LYS A 36 -1 O PHE A 35 N LEU A 11 SHEET 4 A 4 THR A 39 TYR A 43 0 SHEET 1 B 4 ARG A 16 ILE A 17 0 SHEET 2 B 4 MET A 87 CYS A 94 -1 O ARG A 93 N ARG A 16 SHEET 3 B 4 PHE A 75 PRO A 82 -1 N PHE A 75 O CYS A 94 SHEET 4 B 4 GLU A 63 PRO A 66 -1 N GLU A 63 O LEU A 80 CISPEP 1 ALA A 49 PRO A 50 1 0.05 CISPEP 2 ALA A 49 PRO A 50 2 0.02 CISPEP 3 ALA A 49 PRO A 50 3 -0.04 CISPEP 4 ALA A 49 PRO A 50 4 0.04 CISPEP 5 ALA A 49 PRO A 50 5 0.03 CISPEP 6 ALA A 49 PRO A 50 6 -0.06 CISPEP 7 ALA A 49 PRO A 50 7 0.03 CISPEP 8 ALA A 49 PRO A 50 8 0.01 CISPEP 9 ALA A 49 PRO A 50 9 0.04 CISPEP 10 ALA A 49 PRO A 50 10 0.11 CISPEP 11 ALA A 49 PRO A 50 11 -0.01 CISPEP 12 ALA A 49 PRO A 50 12 -0.05 CISPEP 13 ALA A 49 PRO A 50 13 -0.03 CISPEP 14 ALA A 49 PRO A 50 14 -0.03 CISPEP 15 ALA A 49 PRO A 50 15 -0.01 CISPEP 16 ALA A 49 PRO A 50 16 0.06 CISPEP 17 ALA A 49 PRO A 50 17 -0.03 CISPEP 18 ALA A 49 PRO A 50 18 -0.02 CISPEP 19 ALA A 49 PRO A 50 19 0.00 CISPEP 20 ALA A 49 PRO A 50 20 0.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1