HEADER SIGNALING PROTEIN 03-APR-07 2YS5 TITLE SOLUTION STRUCTURE OF THE COMPLEX OF THE PTB DOMAIN OF SNT-2 AND 19- TITLE 2 RESIDUE PEPTIDE (AA 1571-1589) OF HALK COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR SUBSTRATE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PTB DOMAIN; COMPND 5 SYNONYM: FGFR SUBSTRATE 3, SUC1-ASSOCIATED NEUROTROPHIC FACTOR TARGET COMPND 6 2, SNT-2, FGFR-SIGNALING ADAPTOR SNT2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ALK TYROSINE KINASE RECEPTOR; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES IN DATABASE 1571-1589; COMPND 12 SYNONYM: ANAPLASTIC LYMPHOMA KINASE, CD246 ANTIGEN; COMPND 13 EC: 2.7.10.1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FRS3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060320-18; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 12 IS TAKEN FROM HOMO SAPIENS. KEYWDS COMPLEX, SNT-2, PTB DOMAIN, HALK, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 12-FEB-14 2YS5 1 JRNL VERSN REVDAT 3 26-MAY-10 2YS5 1 JRNL REVDAT 2 24-FEB-09 2YS5 1 VERSN REVDAT 1 08-APR-08 2YS5 0 JRNL AUTH S.KOSHIBA,H.LI,Y.MOTODA,T.TOMIZAWA,T.KASAI,N.TOCHIO, JRNL AUTH 2 T.YABUKI,T.HARADA,S.WATANABE,A.TANAKA,M.SHIROUZU,T.KIGAWA, JRNL AUTH 3 T.YAMAMOTO,S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF JRNL TITL 2 NUCLEOPHOSMIN-ANAPLASTIC LYMPHOMA KINASE ONCOPROTEIN BY THE JRNL TITL 3 PHOSPHOTYROSINE BINDING DOMAIN OF SUC1-ASSOCIATED JRNL TITL 4 NEUROTROPHIC FACTOR-INDUCED TYROSINE-PHOSPHORYLATED TARGET-2 JRNL REF J.STRUCT.FUNCT.GENOM. V. 11 125 2010 JRNL REFN ISSN 1345-711X JRNL PMID 20454865 JRNL DOI 10.1007/S10969-010-9091-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YS5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027065. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.37MM SNT-2 PTB DOMAIN U-15N, REMARK 210 13C IN COMPLEX WITH HALK PEPTIDE REMARK 210 (1:1); 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; 3D_13C,15N-F1 REMARK 210 FILTERED 13C-EDITED NOESY; 3D_ REMARK 210 13C,15N-F1 FILTERED 15N-EDITED REMARK 210 NOESY; 2D_F2-13C FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9820, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 42 -35.00 -35.14 REMARK 500 1 SER A 43 -71.17 -58.97 REMARK 500 1 HIS A 50 176.37 -48.18 REMARK 500 1 ARG A 51 -33.58 -34.37 REMARK 500 1 ARG A 52 158.54 -39.65 REMARK 500 1 LEU A 60 -75.47 -63.62 REMARK 500 1 LEU A 62 96.72 -34.74 REMARK 500 1 SER A 69 119.46 -38.11 REMARK 500 1 ASN A 70 42.42 32.84 REMARK 500 1 ASN A 108 50.40 37.45 REMARK 500 1 SER A 109 112.38 -36.52 REMARK 500 1 ASN A 111 31.10 39.43 REMARK 500 1 VAL A 112 -30.72 -35.78 REMARK 500 1 GLU A 114 96.10 -66.22 REMARK 500 1 PRO A 116 -174.78 -69.74 REMARK 500 1 ILE A 119 -37.12 -39.93 REMARK 500 1 THR A 120 -35.82 -35.96 REMARK 500 1 ARG A 121 151.41 -43.07 REMARK 500 1 HIS A 124 143.54 -38.46 REMARK 500 1 GLU A 127 82.28 -67.88 REMARK 500 1 ASP A 129 159.58 -43.29 REMARK 500 1 PRO A 131 -170.47 -69.81 REMARK 500 1 PRO A 137 -174.11 -69.76 REMARK 500 1 ASN B 13 77.51 -105.01 REMARK 500 1 TYR B 14 133.25 -36.23 REMARK 500 2 LEU A 33 -66.40 -100.32 REMARK 500 2 GLN A 42 -34.47 -34.53 REMARK 500 2 GLU A 44 -179.81 -174.49 REMARK 500 2 HIS A 50 -75.03 -97.93 REMARK 500 2 LEU A 62 97.04 -41.58 REMARK 500 2 ARG A 79 -31.82 -36.11 REMARK 500 2 GLN A 84 147.48 -35.98 REMARK 500 2 SER A 109 132.53 -38.68 REMARK 500 2 ILE A 110 -70.13 -113.79 REMARK 500 2 PRO A 116 -178.61 -69.78 REMARK 500 2 PRO A 125 -178.11 -69.77 REMARK 500 2 PRO A 131 -175.95 -69.84 REMARK 500 3 SER A 2 150.15 -42.93 REMARK 500 3 GLN A 42 -25.40 -39.83 REMARK 500 3 SER A 43 -71.96 -73.76 REMARK 500 3 LEU A 62 98.99 -52.29 REMARK 500 3 ASN A 70 36.84 32.12 REMARK 500 3 GLN A 84 132.34 -35.11 REMARK 500 3 CYS A 91 111.05 -169.23 REMARK 500 3 ARG A 93 36.70 -96.82 REMARK 500 3 ILE A 110 78.10 -113.18 REMARK 500 3 PRO A 134 -171.80 -69.79 REMARK 500 3 PRO A 137 -169.85 -69.83 REMARK 500 3 TYR B 16 111.77 -38.75 REMARK 500 4 ASN A 9 137.15 -171.96 REMARK 500 REMARK 500 THIS ENTRY HAS 326 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002009654.1 RELATED DB: TARGETDB DBREF 2YS5 A 8 146 UNP O43559 FRS3_HUMAN 8 146 DBREF 2YS5 B 1 19 UNP Q9UM73 ALK_HUMAN 1571 1589 SEQADV 2YS5 GLY A 1 UNP O43559 EXPRESSION TAG SEQADV 2YS5 SER A 2 UNP O43559 EXPRESSION TAG SEQADV 2YS5 SER A 3 UNP O43559 EXPRESSION TAG SEQADV 2YS5 GLY A 4 UNP O43559 EXPRESSION TAG SEQADV 2YS5 SER A 5 UNP O43559 EXPRESSION TAG SEQADV 2YS5 SER A 6 UNP O43559 EXPRESSION TAG SEQADV 2YS5 GLY A 7 UNP O43559 EXPRESSION TAG SEQRES 1 A 146 GLY SER SER GLY SER SER GLY LEU ASN ARG ASP SER VAL SEQRES 2 A 146 PRO ASP ASN HIS PRO THR LYS PHE LYS VAL THR ASN VAL SEQRES 3 A 146 ASP ASP GLU GLY VAL GLU LEU GLY SER GLY VAL MET GLU SEQRES 4 A 146 LEU THR GLN SER GLU LEU VAL LEU HIS LEU HIS ARG ARG SEQRES 5 A 146 GLU ALA VAL ARG TRP PRO TYR LEU CYS LEU ARG ARG TYR SEQRES 6 A 146 GLY TYR ASP SER ASN LEU PHE SER PHE GLU SER GLY ARG SEQRES 7 A 146 ARG CYS GLN THR GLY GLN GLY ILE PHE ALA PHE LYS CYS SEQRES 8 A 146 SER ARG ALA GLU GLU ILE PHE ASN LEU LEU GLN ASP LEU SEQRES 9 A 146 MET GLN CYS ASN SER ILE ASN VAL MET GLU GLU PRO VAL SEQRES 10 A 146 ILE ILE THR ARG ASN SER HIS PRO ALA GLU LEU ASP LEU SEQRES 11 A 146 PRO ARG ALA PRO GLN PRO PRO ASN ALA LEU GLY TYR THR SEQRES 12 A 146 VAL SER SER SEQRES 1 B 19 LEU PHE ARG LEU ARG HIS PHE PRO CYS GLY ASN VAL ASN SEQRES 2 B 19 TYR GLY TYR GLN GLN GLN HELIX 1 1 ALA A 94 CYS A 107 1 14 SHEET 1 A 7 ALA A 54 TRP A 57 0 SHEET 2 A 7 LEU A 45 HIS A 48 -1 N LEU A 45 O TRP A 57 SHEET 3 A 7 GLU A 32 LEU A 40 -1 N VAL A 37 O HIS A 48 SHEET 4 A 7 LYS A 20 VAL A 26 -1 N VAL A 23 O GLY A 36 SHEET 5 A 7 GLY A 85 LYS A 90 -1 O LYS A 90 N THR A 24 SHEET 6 A 7 PHE A 72 SER A 76 -1 N PHE A 72 O PHE A 89 SHEET 7 A 7 LEU A 62 TYR A 67 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1