HEADER METAL BINDING PROTEIN 03-APR-07 2YSA TITLE SOLUTION STRUCTURE OF THE ZINC FINGER CCHC DOMAIN FROM THE HUMAN TITLE 2 RETINOBLASTOMA-BINDING PROTEIN 6 (RETINOBLASTOMA-BINDING Q PROTEIN 1, TITLE 3 RBQ-1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOBLASTOMA-BINDING PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-CCHC DOMAIN; COMPND 5 SYNONYM: P53-ASSOCIATED CELLULAR PROTEIN OF TESTIS, PROLIFERATION COMPND 6 POTENTIAL-RELATED PROTEIN, PROTEIN P2P-R, RETINOBLASTOMA-BINDING Q COMPND 7 PROTEIN 1, PROTEIN RBQ-1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBBP6; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060522-23; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZINC FINGER, CCHC, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.OHNISHI,M.SATO,N.TOCHIO,S.KOSHIBA,T.HARADA,S.WATANABE,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YSA 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YSA 1 VERSN REVDAT 1 09-OCT-07 2YSA 0 JRNL AUTH S.OHNISHI,M.SATO,N.TOCHIO,S.KOSHIBA,T.HARADA,S.WATANABE, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ZINC FINGER CCHC DOMAIN FROM THE JRNL TITL 2 HUMAN RETINOBLASTOMA-BINDING PROTEIN 6 JRNL TITL 3 (RETINOBLASTOMA-BINDING Q PROTEIN 1, RBQ-1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YSA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027070. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM SAMPLE U-15N,13C; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 16 -179.12 -69.78 REMARK 500 2 TYR A 8 176.35 -53.26 REMARK 500 2 PRO A 16 -174.58 -69.74 REMARK 500 2 THR A 25 -33.20 -34.13 REMARK 500 3 TYR A 8 172.51 -53.99 REMARK 500 3 LYS A 29 -62.86 -97.96 REMARK 500 3 PRO A 35 2.79 -69.83 REMARK 500 3 PRO A 44 80.17 -69.76 REMARK 500 3 PRO A 54 2.82 -69.79 REMARK 500 4 CYS A 10 109.84 -52.04 REMARK 500 4 PRO A 16 -178.08 -69.72 REMARK 500 4 THR A 25 -39.34 -35.57 REMARK 500 4 PRO A 35 2.91 -69.73 REMARK 500 4 PRO A 44 9.96 -69.69 REMARK 500 5 TYR A 8 176.63 -51.99 REMARK 500 5 ASN A 26 102.18 -52.12 REMARK 500 6 PRO A 16 -177.22 -69.72 REMARK 500 6 THR A 25 -33.35 -37.49 REMARK 500 6 PRO A 54 2.69 -69.78 REMARK 500 7 PRO A 16 -174.99 -69.73 REMARK 500 7 PRO A 44 83.96 -69.76 REMARK 500 7 PHE A 47 109.26 -56.05 REMARK 500 8 TYR A 8 175.51 -54.74 REMARK 500 8 ASN A 30 107.74 -52.02 REMARK 500 8 THR A 41 -34.94 -39.38 REMARK 500 8 PRO A 54 3.08 -69.69 REMARK 500 9 PRO A 16 -178.41 -69.80 REMARK 500 9 THR A 25 -39.52 -33.33 REMARK 500 9 GLU A 32 -63.41 -97.07 REMARK 500 9 PRO A 44 -171.28 -69.83 REMARK 500 9 ARG A 45 -38.80 -33.78 REMARK 500 10 PRO A 16 -176.31 -69.72 REMARK 500 10 THR A 25 -33.94 -38.18 REMARK 500 11 PRO A 16 -178.09 -69.83 REMARK 500 11 THR A 25 -38.32 -34.66 REMARK 500 11 PRO A 54 1.98 -69.73 REMARK 500 12 PRO A 44 -164.13 -69.73 REMARK 500 12 ARG A 45 -39.64 -39.55 REMARK 500 13 TYR A 8 176.92 -52.05 REMARK 500 13 ARG A 12 -64.83 -93.30 REMARK 500 13 PRO A 16 -174.32 -69.73 REMARK 500 14 PRO A 16 -178.85 -69.73 REMARK 500 14 THR A 25 -36.85 -34.04 REMARK 500 15 LYS A 29 177.16 -53.08 REMARK 500 15 PRO A 35 2.85 -69.79 REMARK 500 15 PRO A 44 -90.82 -69.76 REMARK 500 16 PRO A 16 -177.40 -69.75 REMARK 500 16 ILE A 20 -9.64 -59.21 REMARK 500 16 LYS A 29 -65.56 -96.52 REMARK 500 16 PRO A 44 5.00 -69.72 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 181 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 CYS A 13 SG 114.6 REMARK 620 3 HIS A 18 NE2 96.2 115.2 REMARK 620 4 CYS A 23 SG 98.6 119.2 109.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 181 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000490.2 RELATED DB: TARGETDB DBREF 2YSA A 8 55 UNP Q7Z6E9 RBBP6_HUMAN 159 206 SEQADV 2YSA GLY A 1 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA SER A 2 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA SER A 3 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA GLY A 4 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA SER A 5 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA SER A 6 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA GLY A 7 UNP Q7Z6E9 EXPRESSION TAG SEQRES 1 A 55 GLY SER SER GLY SER SER GLY TYR THR CYS PHE ARG CYS SEQRES 2 A 55 GLY LYS PRO GLY HIS TYR ILE LYS ASN CYS PRO THR ASN SEQRES 3 A 55 GLY ASP LYS ASN PHE GLU SER GLY PRO ARG ILE LYS LYS SEQRES 4 A 55 SER THR GLY ILE PRO ARG SER PHE MET MET GLU VAL LYS SEQRES 5 A 55 ASP PRO ASN HET ZN A 181 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 TYR A 19 CYS A 23 5 5 HELIX 2 2 PRO A 24 ASP A 28 5 5 LINK SG CYS A 10 ZN ZN A 181 1555 1555 2.39 LINK SG CYS A 13 ZN ZN A 181 1555 1555 2.29 LINK NE2 HIS A 18 ZN ZN A 181 1555 1555 2.10 LINK SG CYS A 23 ZN ZN A 181 1555 1555 2.30 SITE 1 AC1 4 CYS A 10 CYS A 13 HIS A 18 CYS A 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1