data_2YSQ # _entry.id 2YSQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YSQ pdb_00002ysq 10.2210/pdb2ysq/pdb RCSB RCSB027086 ? ? WWPDB D_1000027086 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002100413.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2YSQ _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-04-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Qin, X.R.' 1 'Hayashi, F.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of the SH3 domain from Rho guanine nucleotide exchange factor 9' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qin, X.R.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yokoyama, S.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Rho guanine nucleotide exchange factor 9' _entity.formula_weight 8836.436 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SH3 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rac/Cdc42 guanine nucleotide exchange factor 9, Collybistin, PEM-2 homolog' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVEEGSGPSS G ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVEEGSGPSS G ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002100413.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ASP n 1 9 SER n 1 10 ILE n 1 11 VAL n 1 12 SER n 1 13 ALA n 1 14 GLU n 1 15 ALA n 1 16 VAL n 1 17 TRP n 1 18 ASP n 1 19 HIS n 1 20 VAL n 1 21 THR n 1 22 MET n 1 23 ALA n 1 24 ASN n 1 25 ARG n 1 26 GLU n 1 27 LEU n 1 28 ALA n 1 29 PHE n 1 30 LYS n 1 31 ALA n 1 32 GLY n 1 33 ASP n 1 34 VAL n 1 35 ILE n 1 36 LYS n 1 37 VAL n 1 38 LEU n 1 39 ASP n 1 40 ALA n 1 41 SER n 1 42 ASN n 1 43 LYS n 1 44 ASP n 1 45 TRP n 1 46 TRP n 1 47 TRP n 1 48 GLY n 1 49 GLN n 1 50 ILE n 1 51 ASP n 1 52 ASP n 1 53 GLU n 1 54 GLU n 1 55 GLY n 1 56 TRP n 1 57 PHE n 1 58 PRO n 1 59 ALA n 1 60 SER n 1 61 PHE n 1 62 VAL n 1 63 ARG n 1 64 LEU n 1 65 TRP n 1 66 VAL n 1 67 ASN n 1 68 GLN n 1 69 GLU n 1 70 ASP n 1 71 GLU n 1 72 VAL n 1 73 GLU n 1 74 GLU n 1 75 GLY n 1 76 SER n 1 77 GLY n 1 78 PRO n 1 79 SER n 1 80 SER n 1 81 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'ARHGEF9, KIAA0424' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050919-06 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ARHG9_HUMAN _struct_ref.pdbx_db_accession O43307 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVEEG _struct_ref.pdbx_align_begin 7 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YSQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 75 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O43307 _struct_ref_seq.db_align_beg 7 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 75 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 7 _struct_ref_seq.pdbx_auth_seq_align_end 75 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YSQ GLY A 1 ? UNP O43307 ? ? 'expression tag' 1 1 1 2YSQ SER A 2 ? UNP O43307 ? ? 'expression tag' 2 2 1 2YSQ SER A 3 ? UNP O43307 ? ? 'expression tag' 3 3 1 2YSQ GLY A 4 ? UNP O43307 ? ? 'expression tag' 4 4 1 2YSQ SER A 5 ? UNP O43307 ? ? 'expression tag' 5 5 1 2YSQ SER A 6 ? UNP O43307 ? ? 'expression tag' 6 6 1 2YSQ SER A 76 ? UNP O43307 ? ? 'expression tag' 76 7 1 2YSQ GLY A 77 ? UNP O43307 ? ? 'expression tag' 77 8 1 2YSQ PRO A 78 ? UNP O43307 ? ? 'expression tag' 78 9 1 2YSQ SER A 79 ? UNP O43307 ? ? 'expression tag' 79 10 1 2YSQ SER A 80 ? UNP O43307 ? ? 'expression tag' 80 11 1 2YSQ GLY A 81 ? UNP O43307 ? ? 'expression tag' 81 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.46mM 13C, 15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.entry_id 2YSQ _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations,structures with the lowest energy,target function' _pdbx_nmr_ensemble.entry_id 2YSQ _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' _pdbx_nmr_representative.entry_id 2YSQ # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9820 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2YSQ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2YSQ _struct.title 'Solution structure of the SH3 domain from Rho guanine nucleotide exchange factor 9' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YSQ _struct_keywords.text ;SH3 domain; Cdc42 guanine nucleotide exchange factor (GEF) 9, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 54 ? PRO A 58 ? GLU A 54 PRO A 58 A 2 TRP A 45 ? GLN A 49 ? TRP A 45 GLN A 49 A 3 VAL A 34 ? ASP A 39 ? VAL A 34 ASP A 39 A 4 VAL A 11 ? ALA A 15 ? VAL A 11 ALA A 15 A 5 VAL A 62 ? LEU A 64 ? VAL A 62 LEU A 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 55 ? O GLY A 55 N GLY A 48 ? N GLY A 48 A 2 3 O TRP A 47 ? O TRP A 47 N LEU A 38 ? N LEU A 38 A 3 4 O VAL A 37 ? O VAL A 37 N VAL A 11 ? N VAL A 11 A 4 5 N GLU A 14 ? N GLU A 14 O ARG A 63 ? O ARG A 63 # _atom_sites.entry_id 2YSQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 HIS 19 19 19 HIS HIS A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 MET 22 22 22 MET MET A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 TRP 46 46 46 TRP TRP A . n A 1 47 TRP 47 47 47 TRP TRP A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 TRP 56 56 56 TRP TRP A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 TRP 65 65 65 TRP TRP A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 GLY 81 81 81 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -164.88 115.84 2 1 ALA A 31 ? ? -35.74 107.83 3 1 ASN A 42 ? ? -53.78 179.22 4 1 VAL A 66 ? ? -85.95 43.37 5 1 GLU A 73 ? ? -169.51 117.71 6 2 SER A 5 ? ? -174.34 110.37 7 2 ALA A 15 ? ? -58.82 107.94 8 2 HIS A 19 ? ? -107.08 71.17 9 2 ALA A 23 ? ? -47.45 173.93 10 2 ASP A 33 ? ? -42.14 164.44 11 2 ALA A 40 ? ? -116.31 59.25 12 2 LYS A 43 ? ? -67.52 -73.42 13 2 PHE A 61 ? ? -86.72 33.34 14 2 ASP A 70 ? ? -81.78 43.23 15 2 GLU A 71 ? ? -103.55 42.78 16 3 SER A 9 ? ? -59.25 170.44 17 3 MET A 22 ? ? -85.23 40.92 18 3 LEU A 27 ? ? -56.17 102.03 19 4 SER A 6 ? ? -35.77 137.51 20 4 ALA A 15 ? ? -58.98 105.53 21 4 ASP A 18 ? ? -35.59 130.90 22 4 HIS A 19 ? ? -105.68 72.37 23 4 ALA A 23 ? ? -44.12 165.42 24 4 ASN A 24 ? ? -43.39 161.50 25 4 ARG A 25 ? ? -34.48 97.70 26 4 LEU A 27 ? ? -51.01 105.50 27 4 ALA A 31 ? ? -44.11 108.48 28 4 ALA A 40 ? ? -85.38 46.69 29 4 PRO A 78 ? ? -69.78 -174.28 30 5 ALA A 15 ? ? -55.49 103.48 31 5 THR A 21 ? ? -174.12 146.60 32 5 MET A 22 ? ? -94.54 49.09 33 5 PHE A 29 ? ? -173.21 -178.67 34 5 ALA A 31 ? ? -35.45 126.97 35 5 ASN A 42 ? ? -58.09 -175.76 36 5 TRP A 65 ? ? -88.22 31.44 37 5 ASN A 67 ? ? -93.96 41.65 38 5 PRO A 78 ? ? -69.82 -173.39 39 6 SER A 9 ? ? -65.22 -177.87 40 6 ALA A 15 ? ? -59.44 104.28 41 6 HIS A 19 ? ? -110.83 73.11 42 6 ALA A 23 ? ? -49.35 169.42 43 6 GLU A 26 ? ? -47.80 102.71 44 6 LEU A 27 ? ? -41.53 106.70 45 6 ALA A 31 ? ? -33.96 106.77 46 6 ASP A 39 ? ? -170.76 117.58 47 6 ASN A 42 ? ? -51.70 -177.87 48 6 LYS A 43 ? ? -67.78 -175.03 49 6 ASP A 44 ? ? -34.40 -35.15 50 6 ASN A 67 ? ? -35.76 136.49 51 6 SER A 80 ? ? -36.09 134.72 52 7 SER A 3 ? ? -172.25 141.21 53 7 SER A 5 ? ? -35.11 111.48 54 7 SER A 6 ? ? -47.07 97.65 55 7 MET A 22 ? ? -97.69 54.13 56 7 ALA A 40 ? ? -97.58 43.49 57 7 PHE A 61 ? ? -89.07 39.30 58 7 ASP A 70 ? ? 38.59 43.11 59 7 VAL A 72 ? ? 38.23 32.20 60 7 PRO A 78 ? ? -69.73 -178.34 61 8 SER A 2 ? ? -45.37 159.18 62 8 SER A 3 ? ? -45.37 168.13 63 8 THR A 21 ? ? -171.71 122.80 64 8 VAL A 66 ? ? -34.29 145.59 65 8 ASP A 70 ? ? -35.10 148.37 66 8 GLU A 71 ? ? -35.30 146.77 67 8 GLU A 73 ? ? -35.01 150.71 68 8 PRO A 78 ? ? -69.75 -174.61 69 8 SER A 80 ? ? -48.30 174.37 70 9 ASP A 18 ? ? -37.02 115.85 71 9 ALA A 31 ? ? -34.33 103.90 72 9 ASP A 33 ? ? -50.35 173.56 73 9 ALA A 40 ? ? -106.22 53.96 74 9 ASN A 42 ? ? 35.70 50.33 75 9 TRP A 65 ? ? -87.24 33.91 76 9 GLN A 68 ? ? -100.09 42.02 77 9 ASP A 70 ? ? -102.27 41.76 78 9 GLU A 73 ? ? -171.91 115.06 79 9 SER A 76 ? ? -34.52 131.28 80 9 PRO A 78 ? ? -69.69 -172.38 81 10 ALA A 15 ? ? -54.32 102.37 82 10 THR A 21 ? ? -172.03 149.85 83 10 ALA A 31 ? ? -54.22 106.67 84 10 ALA A 40 ? ? -173.17 105.17 85 10 SER A 41 ? ? -131.10 -67.55 86 10 LEU A 64 ? ? -47.47 157.92 87 11 LEU A 38 ? ? -95.20 -62.23 88 11 ALA A 40 ? ? -95.77 49.74 89 11 PHE A 61 ? ? -101.93 45.35 90 11 TRP A 65 ? ? -84.16 33.60 91 12 ALA A 15 ? ? -58.23 103.05 92 12 HIS A 19 ? ? -114.00 77.56 93 12 LEU A 27 ? ? -36.60 124.24 94 12 ALA A 31 ? ? -48.20 104.66 95 12 LYS A 43 ? ? -79.53 45.49 96 12 ASP A 44 ? ? -125.37 -64.06 97 12 VAL A 72 ? ? -35.24 145.33 98 12 PRO A 78 ? ? -69.76 -171.92 99 13 SER A 2 ? ? -174.28 123.80 100 13 SER A 6 ? ? -123.06 -53.24 101 13 HIS A 19 ? ? -101.92 78.01 102 13 ALA A 23 ? ? -65.89 -179.68 103 13 SER A 41 ? ? 39.71 43.08 104 13 PHE A 61 ? ? -90.54 36.07 105 13 PRO A 78 ? ? -69.83 -176.88 106 14 SER A 2 ? ? -160.92 106.59 107 14 VAL A 20 ? ? -67.19 72.90 108 14 ALA A 23 ? ? -172.83 113.21 109 14 ASN A 42 ? ? -62.31 -178.58 110 14 ASP A 44 ? ? 38.81 28.38 111 14 GLU A 69 ? ? 36.53 41.49 112 15 ASN A 42 ? ? -62.08 -178.54 113 15 VAL A 66 ? ? -39.05 109.84 114 15 GLU A 71 ? ? -85.29 42.59 115 15 GLU A 73 ? ? 37.69 39.67 116 16 SER A 2 ? ? -170.44 149.39 117 16 SER A 5 ? ? 36.94 49.14 118 16 SER A 6 ? ? -88.37 40.94 119 16 ALA A 31 ? ? -49.41 109.51 120 16 ASP A 44 ? ? -73.04 -72.33 121 16 GLU A 71 ? ? -173.69 123.26 122 16 VAL A 72 ? ? -38.05 113.35 123 16 GLU A 74 ? ? -99.58 40.07 124 16 PRO A 78 ? ? -69.86 -177.38 125 17 SER A 5 ? ? -160.50 114.45 126 17 ALA A 23 ? ? -117.36 -74.99 127 17 ASN A 24 ? ? -171.31 110.93 128 17 ARG A 25 ? ? 35.07 42.04 129 17 ALA A 31 ? ? -52.47 106.41 130 17 TRP A 65 ? ? -86.72 30.62 131 17 GLU A 71 ? ? -39.75 129.30 132 17 VAL A 72 ? ? -36.25 151.63 133 17 PRO A 78 ? ? -69.77 -173.67 134 18 SER A 9 ? ? -63.39 97.91 135 18 ASP A 18 ? ? -59.08 108.83 136 18 HIS A 19 ? ? -107.31 78.13 137 18 GLU A 26 ? ? -59.65 170.31 138 18 LYS A 43 ? ? -86.26 49.86 139 18 ASP A 44 ? ? -128.85 -69.87 140 18 LEU A 64 ? ? -55.34 171.56 141 18 VAL A 72 ? ? -59.62 -176.86 142 18 PRO A 78 ? ? -69.75 -172.15 143 18 SER A 80 ? ? -129.65 -63.67 144 19 SER A 9 ? ? 74.09 32.35 145 19 ILE A 10 ? ? -33.40 124.77 146 19 ASP A 18 ? ? -50.51 96.92 147 19 HIS A 19 ? ? -105.27 72.61 148 19 MET A 22 ? ? -106.66 40.38 149 19 ASN A 24 ? ? -132.87 -64.73 150 19 GLU A 26 ? ? -35.12 118.92 151 19 ASN A 42 ? ? -55.29 175.99 152 19 TRP A 65 ? ? -85.19 33.82 153 19 GLU A 69 ? ? 72.84 40.44 154 19 ASP A 70 ? ? -100.38 41.69 155 20 PHE A 29 ? ? -174.92 141.15 156 20 ASP A 33 ? ? -46.20 159.33 157 20 GLN A 68 ? ? -69.00 86.01 158 20 GLU A 69 ? ? -52.99 107.90 159 20 SER A 79 ? ? -66.03 90.85 #