HEADER SIGNALING PROTEIN 03-APR-07 2YSQ TITLE SOLUTION STRUCTURE OF THE SH3 DOMAIN FROM RHO GUANINE NUCLEOTIDE TITLE 2 EXCHANGE FACTOR 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: RAC/CDC42 GUANINE NUCLEOTIDE EXCHANGE FACTOR 9, COLLYBISTIN, COMPND 6 PEM-2 HOMOLOG; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGEF9, KIAA0424; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050919-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SH3 DOMAIN; CDC42 GUANINE NUCLEOTIDE EXCHANGE FACTOR (GEF) 9, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YSQ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YSQ 1 VERSN REVDAT 1 09-OCT-07 2YSQ 0 JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN FROM RHO GUANINE JRNL TITL 2 NUCLEOTIDE EXCHANGE FACTOR 9 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YSQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000027086. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.46MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O' REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 115.84 -164.88 REMARK 500 1 ALA A 31 107.83 -35.74 REMARK 500 1 ASN A 42 179.22 -53.78 REMARK 500 1 VAL A 66 43.37 -85.95 REMARK 500 1 GLU A 73 117.71 -169.51 REMARK 500 2 SER A 5 110.37 -174.34 REMARK 500 2 ALA A 15 107.94 -58.82 REMARK 500 2 HIS A 19 71.17 -107.08 REMARK 500 2 ALA A 23 173.93 -47.45 REMARK 500 2 ASP A 33 164.44 -42.14 REMARK 500 2 ALA A 40 59.25 -116.31 REMARK 500 2 LYS A 43 -73.42 -67.52 REMARK 500 2 PHE A 61 33.34 -86.72 REMARK 500 2 ASP A 70 43.23 -81.78 REMARK 500 2 GLU A 71 42.78 -103.55 REMARK 500 3 SER A 9 170.44 -59.25 REMARK 500 3 MET A 22 40.92 -85.23 REMARK 500 3 LEU A 27 102.03 -56.17 REMARK 500 4 SER A 6 137.51 -35.77 REMARK 500 4 ALA A 15 105.53 -58.98 REMARK 500 4 ASP A 18 130.90 -35.59 REMARK 500 4 HIS A 19 72.37 -105.68 REMARK 500 4 ALA A 23 165.42 -44.12 REMARK 500 4 ASN A 24 161.50 -43.39 REMARK 500 4 ARG A 25 97.70 -34.48 REMARK 500 4 LEU A 27 105.50 -51.01 REMARK 500 4 ALA A 31 108.48 -44.11 REMARK 500 4 ALA A 40 46.69 -85.38 REMARK 500 4 PRO A 78 -174.28 -69.78 REMARK 500 5 ALA A 15 103.48 -55.49 REMARK 500 5 THR A 21 146.60 -174.12 REMARK 500 5 MET A 22 49.09 -94.54 REMARK 500 5 PHE A 29 -178.67 -173.21 REMARK 500 5 ALA A 31 126.97 -35.45 REMARK 500 5 ASN A 42 -175.76 -58.09 REMARK 500 5 TRP A 65 31.44 -88.22 REMARK 500 5 ASN A 67 41.65 -93.96 REMARK 500 5 PRO A 78 -173.39 -69.82 REMARK 500 6 SER A 9 -177.87 -65.22 REMARK 500 6 ALA A 15 104.28 -59.44 REMARK 500 6 HIS A 19 73.11 -110.83 REMARK 500 6 ALA A 23 169.42 -49.35 REMARK 500 6 GLU A 26 102.71 -47.80 REMARK 500 6 LEU A 27 106.70 -41.53 REMARK 500 6 ALA A 31 106.77 -33.96 REMARK 500 6 ASP A 39 117.58 -170.76 REMARK 500 6 ASN A 42 -177.87 -51.70 REMARK 500 6 LYS A 43 -175.03 -67.78 REMARK 500 6 ASP A 44 -35.15 -34.40 REMARK 500 6 ASN A 67 136.49 -35.76 REMARK 500 REMARK 500 THIS ENTRY HAS 159 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100413.1 RELATED DB: TARGETDB DBREF 2YSQ A 7 75 UNP O43307 ARHG9_HUMAN 7 75 SEQADV 2YSQ GLY A 1 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 2 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 3 UNP O43307 EXPRESSION TAG SEQADV 2YSQ GLY A 4 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 5 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 6 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 76 UNP O43307 EXPRESSION TAG SEQADV 2YSQ GLY A 77 UNP O43307 EXPRESSION TAG SEQADV 2YSQ PRO A 78 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 79 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 80 UNP O43307 EXPRESSION TAG SEQADV 2YSQ GLY A 81 UNP O43307 EXPRESSION TAG SEQRES 1 A 81 GLY SER SER GLY SER SER GLY ASP SER ILE VAL SER ALA SEQRES 2 A 81 GLU ALA VAL TRP ASP HIS VAL THR MET ALA ASN ARG GLU SEQRES 3 A 81 LEU ALA PHE LYS ALA GLY ASP VAL ILE LYS VAL LEU ASP SEQRES 4 A 81 ALA SER ASN LYS ASP TRP TRP TRP GLY GLN ILE ASP ASP SEQRES 5 A 81 GLU GLU GLY TRP PHE PRO ALA SER PHE VAL ARG LEU TRP SEQRES 6 A 81 VAL ASN GLN GLU ASP GLU VAL GLU GLU GLY SER GLY PRO SEQRES 7 A 81 SER SER GLY SHEET 1 A 5 GLU A 54 PRO A 58 0 SHEET 2 A 5 TRP A 45 GLN A 49 -1 N GLY A 48 O GLY A 55 SHEET 3 A 5 VAL A 34 ASP A 39 -1 N LEU A 38 O TRP A 47 SHEET 4 A 5 VAL A 11 ALA A 15 -1 N VAL A 11 O VAL A 37 SHEET 5 A 5 VAL A 62 LEU A 64 -1 O ARG A 63 N GLU A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1