HEADER CELL ADHESION 03-APR-07 2YST TITLE SOLUTION STRUCTURE OF THE THIRD CADHERIN DOMAIN FROM HUMAN TITLE 2 PROTOCADHERIN 7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOCADHERIN-7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CADHERIN; COMPND 5 SYNONYM: BRAIN-HEART PROTOCADHERIN, BH-PCDH; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCDH7, BHPCDH; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060515-20; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS BRAIN-HEART PROTOCADHERIN, BH-PCDH, BETA-SANDWICH, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SEIMIYA,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YST 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YST 1 VERSN REVDAT 1 09-OCT-07 2YST 0 JRNL AUTH K.SEIMIYA,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD CADHERIN DOMAIN FROM HUMAN JRNL TITL 2 PROTOCADHERIN 7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YST COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000027089. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 13C, 15N-LABELED PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O; REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9818, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -60.43 -123.58 REMARK 500 1 ASN A 10 33.79 -87.79 REMARK 500 1 ASN A 26 31.66 -84.64 REMARK 500 1 PRO A 29 4.01 -69.72 REMARK 500 1 ILE A 33 -64.39 -93.02 REMARK 500 1 ALA A 39 122.74 -33.24 REMARK 500 1 VAL A 43 29.50 46.31 REMARK 500 1 ARG A 78 151.01 -43.35 REMARK 500 1 GLN A 86 118.27 -168.75 REMARK 500 1 ASP A 95 -68.67 -135.02 REMARK 500 1 LYS A 101 93.67 -54.53 REMARK 500 1 ILE A 111 91.26 -66.78 REMARK 500 1 ASP A 116 33.92 -94.00 REMARK 500 2 SER A 2 112.20 -37.10 REMARK 500 2 SER A 3 121.31 -172.86 REMARK 500 2 SER A 11 151.83 -41.13 REMARK 500 2 PRO A 12 87.50 -69.81 REMARK 500 2 TYR A 19 106.18 -56.51 REMARK 500 2 ASN A 26 38.63 -88.01 REMARK 500 2 PRO A 29 79.83 -69.83 REMARK 500 2 ASP A 40 41.62 -93.79 REMARK 500 2 LEU A 41 -36.21 -133.36 REMARK 500 2 VAL A 43 42.72 -80.20 REMARK 500 2 ILE A 49 129.14 -34.76 REMARK 500 2 ALA A 55 47.45 -108.88 REMARK 500 2 THR A 57 152.19 -44.70 REMARK 500 2 ARG A 78 143.64 -39.23 REMARK 500 2 GLN A 86 106.35 -163.21 REMARK 500 2 ARG A 96 34.82 -86.20 REMARK 500 2 ASN A 117 105.12 -174.99 REMARK 500 3 PHE A 14 159.62 -41.22 REMARK 500 3 ASN A 26 42.81 -102.39 REMARK 500 3 ALA A 28 161.89 -48.13 REMARK 500 3 PRO A 29 8.32 -69.74 REMARK 500 3 ASP A 40 -48.92 -133.38 REMARK 500 3 LEU A 41 -49.82 -131.85 REMARK 500 3 VAL A 43 45.84 -77.91 REMARK 500 3 ARG A 96 78.97 -68.02 REMARK 500 4 ASN A 10 73.82 -109.79 REMARK 500 4 PRO A 12 96.09 -69.83 REMARK 500 4 GLU A 25 -35.97 -39.90 REMARK 500 4 ASN A 26 37.06 -85.25 REMARK 500 4 PRO A 29 4.28 -69.79 REMARK 500 4 ILE A 33 -64.16 -104.42 REMARK 500 4 ALA A 39 145.84 -34.72 REMARK 500 4 ARG A 78 151.88 -46.67 REMARK 500 5 SER A 5 112.85 -168.10 REMARK 500 5 ASN A 26 45.79 -104.27 REMARK 500 5 PRO A 29 12.61 -69.79 REMARK 500 5 ILE A 33 -70.69 -101.17 REMARK 500 REMARK 500 THIS ENTRY HAS 239 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001251.1 RELATED DB: TARGETDB DBREF 2YST A 8 119 UNP O60245 PCDH7_HUMAN 302 413 SEQADV 2YST GLY A 1 UNP O60245 EXPRESSION TAG SEQADV 2YST SER A 2 UNP O60245 EXPRESSION TAG SEQADV 2YST SER A 3 UNP O60245 EXPRESSION TAG SEQADV 2YST GLY A 4 UNP O60245 EXPRESSION TAG SEQADV 2YST SER A 5 UNP O60245 EXPRESSION TAG SEQADV 2YST SER A 6 UNP O60245 EXPRESSION TAG SEQADV 2YST GLY A 7 UNP O60245 EXPRESSION TAG SEQRES 1 A 119 GLY SER SER GLY SER SER GLY ASN ASP ASN SER PRO ARG SEQRES 2 A 119 PHE GLU LYS SER VAL TYR GLU ALA ASP LEU ALA GLU ASN SEQRES 3 A 119 SER ALA PRO GLY THR PRO ILE LEU GLN LEU ARG ALA ALA SEQRES 4 A 119 ASP LEU ASP VAL GLY VAL ASN GLY GLN ILE GLU TYR VAL SEQRES 5 A 119 PHE GLY ALA ALA THR GLU SER VAL ARG ARG LEU LEU ARG SEQRES 6 A 119 LEU ASP GLU THR SER GLY TRP LEU SER VAL LEU HIS ARG SEQRES 7 A 119 ILE ASP ARG GLU GLU VAL ASN GLN LEU ARG PHE THR VAL SEQRES 8 A 119 MET ALA ARG ASP ARG GLY GLN PRO PRO LYS THR ASP LYS SEQRES 9 A 119 ALA THR VAL VAL LEU ASN ILE LYS ASP GLU ASN ASP ASN SEQRES 10 A 119 VAL PRO HELIX 1 1 SER A 59 LEU A 63 1 5 SHEET 1 A 4 VAL A 18 ALA A 24 0 SHEET 2 A 4 ASP A 103 LYS A 112 1 O VAL A 108 N ALA A 21 SHEET 3 A 4 GLN A 86 ALA A 93 -1 N PHE A 89 O VAL A 107 SHEET 4 A 4 VAL A 52 PHE A 53 -1 N VAL A 52 O MET A 92 SHEET 1 B 3 PRO A 32 GLN A 35 0 SHEET 2 B 3 TRP A 72 VAL A 75 -1 O LEU A 73 N LEU A 34 SHEET 3 B 3 LEU A 64 LEU A 66 -1 N ARG A 65 O SER A 74 CISPEP 1 GLN A 98 PRO A 99 1 -0.06 CISPEP 2 GLN A 98 PRO A 99 2 0.09 CISPEP 3 GLN A 98 PRO A 99 3 0.02 CISPEP 4 GLN A 98 PRO A 99 4 0.00 CISPEP 5 GLN A 98 PRO A 99 5 -0.01 CISPEP 6 GLN A 98 PRO A 99 6 0.03 CISPEP 7 GLN A 98 PRO A 99 7 -0.01 CISPEP 8 GLN A 98 PRO A 99 8 0.06 CISPEP 9 GLN A 98 PRO A 99 9 -0.01 CISPEP 10 GLN A 98 PRO A 99 10 0.01 CISPEP 11 GLN A 98 PRO A 99 11 -0.01 CISPEP 12 GLN A 98 PRO A 99 12 -0.04 CISPEP 13 GLN A 98 PRO A 99 13 0.01 CISPEP 14 GLN A 98 PRO A 99 14 -0.09 CISPEP 15 GLN A 98 PRO A 99 15 0.00 CISPEP 16 GLN A 98 PRO A 99 16 0.01 CISPEP 17 GLN A 98 PRO A 99 17 0.00 CISPEP 18 GLN A 98 PRO A 99 18 -0.04 CISPEP 19 GLN A 98 PRO A 99 19 -0.04 CISPEP 20 GLN A 98 PRO A 99 20 -0.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1