HEADER SIGNALING PROTEIN 04-APR-07 2YSX TITLE SOLUTION STRUCTURE OF THE HUMAN SHIP SH2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNALING INOSITOL POLYPHOSPHATE PHOSPHATASE SHIP II; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN, UNP RESIDUES 1-112; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHIP; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061218-23; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SH2 DOMAIN, PHOSPHOTYROSINE BINDING DOMAIN, PROTEIN TYROSINE KINASE, KEYWDS 2 SIGNAL TRANSDUCTION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 3 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.KASAI,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YSX 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YSX 1 VERSN REVDAT 1 08-APR-08 2YSX 0 JRNL AUTH T.KASAI,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HUMAN SHIP SH2 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YSX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027093. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 220MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.79MM SH2 DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.5); 200MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9810, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 8 157.73 -45.62 REMARK 500 1 PRO A 10 -171.96 -69.81 REMARK 500 1 HIS A 14 -70.60 -43.53 REMARK 500 1 ASP A 32 41.42 -82.36 REMARK 500 1 ASP A 67 36.27 -97.68 REMARK 500 1 GLN A 73 41.12 -87.40 REMARK 500 1 GLU A 76 -71.89 -70.91 REMARK 500 1 SER A 79 53.27 -101.24 REMARK 500 1 MET A 98 -73.85 -114.57 REMARK 500 1 LEU A 104 109.94 -51.58 REMARK 500 1 GLN A 105 -60.13 -92.42 REMARK 500 1 PRO A 107 92.34 -69.81 REMARK 500 1 GLU A 111 71.22 -107.08 REMARK 500 1 ASP A 117 -75.02 -67.72 REMARK 500 2 MET A 8 93.41 -58.41 REMARK 500 2 GLU A 24 -32.90 -37.39 REMARK 500 2 ARG A 28 -70.23 -49.91 REMARK 500 2 SER A 40 176.21 -51.61 REMARK 500 2 ASP A 67 33.31 -94.42 REMARK 500 2 ASP A 68 28.88 43.89 REMARK 500 2 GLN A 73 79.72 -104.76 REMARK 500 2 ALA A 74 -70.34 -95.06 REMARK 500 2 VAL A 78 -56.71 -130.68 REMARK 500 2 TYR A 93 31.42 -96.04 REMARK 500 2 ASN A 97 -71.86 -61.80 REMARK 500 2 GLN A 105 -67.20 -100.82 REMARK 500 2 PRO A 107 90.29 -69.72 REMARK 500 2 VAL A 108 99.57 -37.69 REMARK 500 2 LEU A 110 175.38 -58.79 REMARK 500 3 SER A 6 56.17 -113.53 REMARK 500 3 HIS A 14 38.35 -99.72 REMARK 500 3 ASN A 55 28.25 46.01 REMARK 500 3 ASP A 67 36.82 -84.09 REMARK 500 3 ASP A 68 41.95 35.12 REMARK 500 3 PRO A 107 80.14 -69.76 REMARK 500 3 VAL A 108 95.69 -32.22 REMARK 500 3 LEU A 110 161.94 -49.62 REMARK 500 3 GLU A 113 105.89 -54.52 REMARK 500 3 ASP A 114 103.48 -47.65 REMARK 500 4 SER A 3 36.92 -91.47 REMARK 500 4 SER A 6 -74.49 -118.59 REMARK 500 4 ASN A 16 90.40 -61.75 REMARK 500 4 LYS A 21 -36.89 -37.57 REMARK 500 4 ASP A 32 49.99 -97.90 REMARK 500 4 SER A 40 98.69 -66.08 REMARK 500 4 GLU A 66 155.89 -37.49 REMARK 500 4 GLN A 73 57.24 -94.88 REMARK 500 4 MET A 80 117.34 -162.61 REMARK 500 4 VAL A 101 -34.24 -36.58 REMARK 500 4 LEU A 104 96.51 -42.79 REMARK 500 REMARK 500 THIS ENTRY HAS 252 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002102240.1 RELATED DB: TARGETDB DBREF 2YSX A 8 119 UNP Q9UE80 Q9UE80_HUMAN 1 112 SEQADV 2YSX GLY A 1 UNP Q9UE80 EXPRESSION TAG SEQADV 2YSX SER A 2 UNP Q9UE80 EXPRESSION TAG SEQADV 2YSX SER A 3 UNP Q9UE80 EXPRESSION TAG SEQADV 2YSX GLY A 4 UNP Q9UE80 EXPRESSION TAG SEQADV 2YSX SER A 5 UNP Q9UE80 EXPRESSION TAG SEQADV 2YSX SER A 6 UNP Q9UE80 EXPRESSION TAG SEQADV 2YSX GLY A 7 UNP Q9UE80 EXPRESSION TAG SEQRES 1 A 119 GLY SER SER GLY SER SER GLY MET VAL PRO CYS TRP ASN SEQRES 2 A 119 HIS GLY ASN ILE THR ARG SER LYS ALA GLU GLU LEU LEU SEQRES 3 A 119 SER ARG THR GLY LYS ASP GLY SER PHE LEU VAL ARG ALA SEQRES 4 A 119 SER GLU SER ILE SER ARG ALA TYR ALA LEU CYS VAL LEU SEQRES 5 A 119 TYR ARG ASN CYS VAL TYR THR TYR ARG ILE LEU PRO ASN SEQRES 6 A 119 GLU ASP ASP LYS PHE THR VAL GLN ALA SER GLU GLY VAL SEQRES 7 A 119 SER MET ARG PHE PHE THR LYS LEU ASP GLN LEU ILE GLU SEQRES 8 A 119 PHE TYR LYS LYS GLU ASN MET GLY LEU VAL THR HIS LEU SEQRES 9 A 119 GLN TYR PRO VAL PRO LEU GLU GLU GLU ASP THR GLY ASP SEQRES 10 A 119 ASP PRO HELIX 1 1 THR A 18 GLY A 30 1 13 HELIX 2 2 LYS A 85 TYR A 93 1 9 SHEET 1 A 5 ASN A 13 GLY A 15 0 SHEET 2 A 5 SER A 34 ALA A 39 1 O ALA A 39 N GLY A 15 SHEET 3 A 5 TYR A 47 LEU A 52 -1 O CYS A 50 N LEU A 36 SHEET 4 A 5 VAL A 57 PRO A 64 -1 O TYR A 60 N LEU A 49 SHEET 5 A 5 PHE A 70 VAL A 72 -1 O THR A 71 N LEU A 63 SHEET 1 B 3 ASN A 13 GLY A 15 0 SHEET 2 B 3 SER A 34 ALA A 39 1 O ALA A 39 N GLY A 15 SHEET 3 B 3 TYR A 106 PRO A 107 1 O TYR A 106 N PHE A 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1