HEADER PROTEIN BINDING 05-APR-07 2YT1 TITLE SOLUTION STRUCTURE OF THE CHIMERA OF THE C-TERMINAL TAIL PEPTIDE OF TITLE 2 APP AND THE C-TERMINAL PID DOMAIN OF FE65L COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN AND AMYLOID BETA A4 PRECURSOR COMPND 3 PROTEIN-BINDING FAMILY B MEMBER 2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: APP PEPTIDE AND PID DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P060710-08; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CHIMERA, FE65L, PID DOMAIN, AMYLOID PRECURSOR PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 16-MAR-22 2YT1 1 REMARK SEQADV REVDAT 4 24-FEB-09 2YT1 1 VERSN REVDAT 3 04-NOV-08 2YT1 1 JRNL REVDAT 2 02-SEP-08 2YT1 1 SEQADV REVDAT 1 08-APR-08 2YT1 0 JRNL AUTH H.LI,S.KOSHIBA,F.HAYASHI,N.TOCHIO,T.TOMIZAWA,T.KASAI, JRNL AUTH 2 T.YABUKI,Y.MOTODA,T.HARADA,S.WATANABE,M.INOUE,Y.HAYASHIZAKI, JRNL AUTH 3 A.TANAKA,T.KIGAWA,S.YOKOYAMA JRNL TITL STRUCTURE OF THE C-TERMINAL PHOSPHOTYROSINE INTERACTION JRNL TITL 2 DOMAIN OF FE65L1 COMPLEXED WITH THE CYTOPLASMIC TAIL OF JRNL TITL 3 AMYLOID PRECURSOR PROTEIN REVEALS A NOVEL PEPTIDE BINDING JRNL TITL 4 MODE JRNL REF J.BIOL.CHEM. V. 283 27165 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18650440 JRNL DOI 10.1074/JBC.M803892200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YT1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027097. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.00MM CHIMERA SAMPLE U-15N, REMARK 210 13C; 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 8 146.02 -171.70 REMARK 500 1 ALA A 9 -61.27 -91.26 REMARK 500 1 GLN A 23 -74.96 -61.01 REMARK 500 1 GLU A 35 -70.87 -74.27 REMARK 500 1 PRO A 42 1.37 -69.77 REMARK 500 1 ILE A 46 44.66 -105.71 REMARK 500 1 LEU A 69 170.68 -47.35 REMARK 500 2 GLN A 23 -74.62 -55.73 REMARK 500 2 ILE A 46 107.42 -34.56 REMARK 500 2 GLU A 47 111.32 -166.34 REMARK 500 2 SER A 52 143.56 -174.09 REMARK 500 2 ASP A 117 47.66 39.55 REMARK 500 2 GLU A 129 33.76 -97.18 REMARK 500 2 VAL A 137 -35.08 -38.49 REMARK 500 3 GLN A 23 -74.31 -67.28 REMARK 500 3 LYS A 32 37.17 -83.53 REMARK 500 3 GLU A 35 55.90 -90.86 REMARK 500 3 THR A 67 117.28 -35.03 REMARK 500 3 SER A 110 106.12 -56.38 REMARK 500 3 LYS A 147 -32.18 -38.58 REMARK 500 3 ALA A 174 32.25 -89.93 REMARK 500 4 SER A 5 50.54 38.74 REMARK 500 4 ARG A 16 -39.69 -38.31 REMARK 500 4 GLU A 35 42.54 -84.45 REMARK 500 4 SER A 61 113.78 -161.20 REMARK 500 4 PRO A 65 -177.85 -69.80 REMARK 500 4 LYS A 126 -70.89 -87.39 REMARK 500 4 LEU A 132 -39.19 -36.25 REMARK 500 4 ALA A 174 41.79 -82.74 REMARK 500 5 PHE A 34 50.17 32.72 REMARK 500 5 ASN A 39 155.98 -47.17 REMARK 500 5 GLU A 47 35.74 36.44 REMARK 500 5 LYS A 126 -69.01 -97.41 REMARK 500 5 VAL A 131 49.75 33.50 REMARK 500 5 LEU A 140 113.57 -39.92 REMARK 500 6 SER A 44 115.89 -36.05 REMARK 500 6 GLU A 47 42.67 39.48 REMARK 500 6 SER A 51 176.99 -49.45 REMARK 500 6 SER A 58 -60.81 -130.75 REMARK 500 6 PRO A 63 99.30 -69.78 REMARK 500 6 LYS A 126 -72.47 -75.80 REMARK 500 6 ALA A 174 37.81 -85.31 REMARK 500 7 GLU A 35 48.84 -84.75 REMARK 500 7 PRO A 42 87.43 -69.80 REMARK 500 7 SER A 43 41.95 -100.75 REMARK 500 7 GLU A 129 31.03 -90.86 REMARK 500 7 VAL A 131 47.14 38.00 REMARK 500 7 ALA A 174 35.49 -93.47 REMARK 500 8 ALA A 9 -64.86 -104.35 REMARK 500 8 GLN A 36 43.32 -85.05 REMARK 500 REMARK 500 THIS ENTRY HAS 171 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TKR001324506.1 RELATED DB: TARGETDB DBREF 2YT1 A 8 39 UNP P12023 A4_MOUSE 739 770 DBREF 2YT1 A 63 185 UNP Q9DBR4 APBB2_MOUSE 582 704 SEQADV 2YT1 GLY A 1 UNP P12023 EXPRESSION TAG SEQADV 2YT1 SER A 2 UNP P12023 EXPRESSION TAG SEQADV 2YT1 SER A 3 UNP P12023 EXPRESSION TAG SEQADV 2YT1 GLY A 4 UNP P12023 EXPRESSION TAG SEQADV 2YT1 SER A 5 UNP P12023 EXPRESSION TAG SEQADV 2YT1 SER A 6 UNP P12023 EXPRESSION TAG SEQADV 2YT1 GLY A 7 UNP P12023 EXPRESSION TAG SEQADV 2YT1 SER A 40 UNP P12023 LINKER SEQADV 2YT1 GLY A 41 UNP P12023 LINKER SEQADV 2YT1 PRO A 42 UNP P12023 LINKER SEQADV 2YT1 SER A 43 UNP P12023 LINKER SEQADV 2YT1 SER A 44 UNP P12023 LINKER SEQADV 2YT1 GLY A 45 UNP P12023 LINKER SEQADV 2YT1 ILE A 46 UNP P12023 LINKER SEQADV 2YT1 GLU A 47 UNP P12023 LINKER SEQADV 2YT1 GLY A 48 UNP P12023 LINKER SEQADV 2YT1 ARG A 49 UNP P12023 LINKER SEQADV 2YT1 GLY A 50 UNP P12023 LINKER SEQADV 2YT1 SER A 51 UNP P12023 LINKER SEQADV 2YT1 SER A 52 UNP P12023 LINKER SEQADV 2YT1 GLY A 53 UNP P12023 LINKER SEQADV 2YT1 SER A 54 UNP P12023 LINKER SEQADV 2YT1 SER A 55 UNP P12023 LINKER SEQADV 2YT1 GLY A 56 UNP P12023 LINKER SEQADV 2YT1 SER A 57 UNP P12023 LINKER SEQADV 2YT1 SER A 58 UNP P12023 LINKER SEQADV 2YT1 GLY A 59 UNP P12023 LINKER SEQADV 2YT1 SER A 60 UNP P12023 LINKER SEQADV 2YT1 SER A 61 UNP P12023 LINKER SEQADV 2YT1 GLY A 62 UNP P12023 LINKER SEQRES 1 A 185 GLY SER SER GLY SER SER GLY ASP ALA ALA VAL THR PRO SEQRES 2 A 185 GLU GLU ARG HIS LEU SER LYS MET GLN GLN ASN GLY TYR SEQRES 3 A 185 GLU ASN PRO THR TYR LYS PHE PHE GLU GLN MET GLN ASN SEQRES 4 A 185 SER GLY PRO SER SER GLY ILE GLU GLY ARG GLY SER SER SEQRES 5 A 185 GLY SER SER GLY SER SER GLY SER SER GLY PRO THR PRO SEQRES 6 A 185 LYS THR GLU LEU VAL GLN LYS PHE ARG VAL GLN TYR LEU SEQRES 7 A 185 GLY MET LEU PRO VAL ASP ARG PRO VAL GLY MET ASP THR SEQRES 8 A 185 LEU ASN SER ALA ILE GLU ASN LEU MET THR SER SER SER SEQRES 9 A 185 LYS GLU ASP TRP PRO SER VAL ASN MET ASN VAL ALA ASP SEQRES 10 A 185 ALA THR VAL THR VAL ILE SER GLU LYS ASN GLU GLU GLU SEQRES 11 A 185 VAL LEU VAL GLU CYS ARG VAL ARG PHE LEU SER PHE MET SEQRES 12 A 185 GLY VAL GLY LYS ASP VAL HIS THR PHE ALA PHE ILE MET SEQRES 13 A 185 ASP THR GLY ASN GLN ARG PHE GLU CYS HIS VAL PHE TRP SEQRES 14 A 185 CYS GLU PRO ASN ALA ALA ASN VAL SER GLU ALA VAL GLN SEQRES 15 A 185 ALA ALA CYS HELIX 1 1 PRO A 13 GLN A 22 1 10 HELIX 2 2 PRO A 29 GLU A 35 1 7 HELIX 3 3 MET A 89 SER A 102 1 14 HELIX 4 4 ALA A 175 CYS A 185 1 11 SHEET 1 A 8 TYR A 26 GLU A 27 0 SHEET 2 A 8 LEU A 140 VAL A 145 -1 SHEET 3 A 8 THR A 151 ASP A 157 -1 SHEET 4 A 8 PHE A 163 TRP A 169 -1 SHEET 5 A 8 GLN A 71 PRO A 82 -1 SHEET 6 A 8 SER A 110 ALA A 116 -1 SHEET 7 A 8 THR A 119 SER A 124 -1 SHEET 8 A 8 VAL A 133 ARG A 136 -1 CISPEP 1 GLU A 171 PRO A 172 1 0.03 CISPEP 2 GLU A 171 PRO A 172 2 0.05 CISPEP 3 GLU A 171 PRO A 172 3 0.00 CISPEP 4 GLU A 171 PRO A 172 4 0.05 CISPEP 5 GLU A 171 PRO A 172 5 0.07 CISPEP 6 GLU A 171 PRO A 172 6 -0.01 CISPEP 7 GLU A 171 PRO A 172 7 -0.04 CISPEP 8 GLU A 171 PRO A 172 8 0.02 CISPEP 9 GLU A 171 PRO A 172 9 0.06 CISPEP 10 GLU A 171 PRO A 172 10 0.03 CISPEP 11 GLU A 171 PRO A 172 11 -0.01 CISPEP 12 GLU A 171 PRO A 172 12 -0.02 CISPEP 13 GLU A 171 PRO A 172 13 0.06 CISPEP 14 GLU A 171 PRO A 172 14 -0.06 CISPEP 15 GLU A 171 PRO A 172 15 -0.03 CISPEP 16 GLU A 171 PRO A 172 16 -0.10 CISPEP 17 GLU A 171 PRO A 172 17 0.03 CISPEP 18 GLU A 171 PRO A 172 18 -0.01 CISPEP 19 GLU A 171 PRO A 172 19 -0.04 CISPEP 20 GLU A 171 PRO A 172 20 -0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1